mRNA_H-elongata_contig110990.900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110990.900.1
Unique NamemRNA_H-elongata_contig110990.900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A6H5JLL3_9PHAE (Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.950e-30
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 219
            QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYG RRNVAKTFVGTPCWMAPEVMEQV
Sbjct:  157 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGARRNVAKTFVGTPCWMAPEVMEQV 214
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A835Z4G7_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.950e-27
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 219
            QIHRDIKAGNILL  DGRV+LADFGVAGWL+GYGNRR+  KTFVGTPCWMAPEVMEQV
Sbjct:  146 QIHRDIKAGNILLSSDGRVQLADFGVAGWLIGYGNRRSTTKTFVGTPCWMAPEVMEQV 203
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A7S2I874_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I874_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.220e-22
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 219
            QIHRDIKAGNILL  DG V++ADFGV+GWL   G+RR+ A TFVGTPCWMAPEVMEQV
Sbjct:   18 QIHRDIKAGNILLDGDGVVRIADFGVSGWLDYGGSRRSNANTFVGTPCWMAPEVMEQV 75
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A7S2RQ89_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RQ89_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.280e-22
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 219
            QIHRD+KAGNILLG D  V++ADFGV+GWLV  GNRR   +TFVGTPCWMAPEVMEQV
Sbjct:  176 QIHRDVKAGNILLGSDANVRIADFGVSGWLVYGGNRRENTRTFVGTPCWMAPEVMEQV 233
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A183J916_9BILA (Protein kinase domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J916_9BILA)

HSP 1 Score: 92.8 bits (229), Expect = 2.450e-22
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGN--RRNVAKTFVGTPCWMAPEVMEQVGP--LLFLFI 243
            QIHRDIKAGNILL EDG +++ADFGV+ WL   G+  R+ V  TFVGTPCWMAPEVMEQVG   L++ F+
Sbjct:   71 QIHRDIKAGNILLAEDGTIQIADFGVSSWLATGGDLSRQKVRHTFVGTPCWMAPEVMEQVGVSRLMYFFV 140
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A4D9D9M6_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9M6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.740e-22
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 219
            QIHRD+KAGNILL  +G V+LADFGV+GWL+  G+RR   KTFVGTPCWMAPEVMEQ+
Sbjct:  138 QIHRDVKAGNILLDGEGHVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQI 195
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A7S2XYH4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.770e-22
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQ 216
            Q+HRD+KAGNILL   G V+LADFGVAGWL+ YG R +  KTFVGTPCWMAPEVMEQ
Sbjct:  138 QVHRDVKAGNILLSSTGDVRLADFGVAGWLIRYGERHSTKKTFVGTPCWMAPEVMEQ 194
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A1E7FB95_9STRA (Kinase MAPKKKK, MAP4K-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB95_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.030e-21
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQVG 222
            QIHRDIKAGNIL+  +G +++ADFGV+GWL+  G ++  AKTFVGTPCWMAPEVMEQ+ 
Sbjct:  121 QIHRDIKAGNILIDHNGDIRIADFGVSGWLINAGKQQEKAKTFVGTPCWMAPEVMEQIN 179
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A2S2R562_9HEMI (Serine/threonine-protein kinase OSR1 n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2R562_9HEMI)

HSP 1 Score: 93.6 bits (231), Expect = 2.100e-21
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLV-GYG-NRRNVAKTFVGTPCWMAPEVMEQV 219
            QIHRDIKAGNILLGEDG V++ADFGV+ WL  GY  NR+ V  TFVGTPCWMAPEVMEQV
Sbjct:  191 QIHRDIKAGNILLGEDGTVQIADFGVSAWLTTGYDTNRQKVRHTFVGTPCWMAPEVMEQV 250
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BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Match: A0A0D2X543_CAPO3 (Non-specific serine/threonine protein kinase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X543_CAPO3)

HSP 1 Score: 95.9 bits (237), Expect = 2.510e-21
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   46 QIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQVG 222
            QIHRD+KAGNILL  DG V+LADFGV+ WLV  G RRN  +TFVGTPCWMAPEVMEQV 
Sbjct:  146 QIHRDVKAGNILLDSDGTVQLADFGVSSWLVEGGERRNHRQTFVGTPCWMAPEVMEQVN 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110990.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLL3_9PHAE1.950e-3098.28Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A835Z4G7_9STRA1.950e-2787.93Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S2I874_9STRA1.220e-2277.59Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2RQ89_9STRA2.280e-2277.59Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A183J916_9BILA2.450e-2265.71Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A4D9D9M6_9STRA3.740e-2274.14Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A7S2XYH4_9STRA5.770e-2275.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7FB95_9STRA2.030e-2167.80Kinase MAPKKKK, MAP4K-like protein (Fragment) n=1 ... [more]
A0A2S2R562_9HEMI2.100e-2178.33Serine/threonine-protein kinase OSR1 n=1 Tax=Sipha... [more]
A0A0D2X543_CAPO32.510e-2176.27Non-specific serine/threonine protein kinase n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110990contigH-elongata_contig110990:1897..2139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score97.8
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog192875.XP_004343488.1
Preferred nameSTK39
KEGG koko:K08835
GOsGO:0000166,GO:0000187,GO:0000287,GO:0001885,GO:0001894,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0002028,GO:0002064,GO:0003008,GO:0003013,GO:0003158,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006971,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007272,GO:0007275,GO:0007346,GO:0007399,GO:0007422,GO:0007444,GO:0008015,GO:0008065,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008217,GO:0008362,GO:0008366,GO:0009628,GO:0009651,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010766,GO:0010941,GO:0010959,GO:0016020,GO:0016301,GO:0016310,GO:0016323,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0022898,GO:0023014,GO:0023016,GO:0023051,GO:0023052,GO:0023056,GO:0030104,GO:0030154,GO:0030554,GO:0030855,GO:0031098,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031399,GO:0031400,GO:0031401,GO:0031974,GO:0031981,GO:0032101,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032409,GO:0032410,GO:0032411,GO:0032412,GO:0032413,GO:0032414,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032890,GO:0032891,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034762,GO:0034763,GO:0034764,GO:0034765,GO:0034766,GO:0034767,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0036003,GO:0036094,GO:0036211,GO:0036251,GO:0036438,GO:0040003,GO:0042325,GO:0042326,GO:0042327,GO:0042335,GO:0042538,GO:0042592,GO:0042802,GO:0042981,GO:0043067,GO:0043085,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043266,GO:0043267,GO:0043268,GO:0043269,GO:0043270,GO:0043271,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0044057,GO:0044058,GO:0044070,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045446,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046777,GO:0046872,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050727,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0051952,GO:0051953,GO:0051955,GO:0051956,GO:0060249,GO:0060255,GO:0060429,GO:0060457,GO:0060562,GO:0061392,GO:0061393,GO:0061404,GO:0061416,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071214,GO:0071470,GO:0071472,GO:0071474,GO:0071475,GO:0071476,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072697,GO:0080090,GO:0080134,GO:0090186,GO:0090188,GO:0097159,GO:0097367,GO:0098590,GO:0104004,GO:0140096,GO:1901016,GO:1901017,GO:1901265,GO:1901363,GO:1901379,GO:1901380,GO:1901564,GO:1902305,GO:1902306,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1903789,GO:1903792,GO:1903959,GO:1903960,GO:1904062,GO:1904063,GO:1905407,GO:1905408,GO:1990778,GO:2000112,GO:2000649,GO:2000650,GO:2001023,GO:2001024,GO:2001141
EggNOG free text desc.Serine threonine kinase
EggNOG OGs38BXD@33154,KOG0582@1,KOG0582@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.0979476-CDS-H-elongata_contig110990:1896..21391622929635.0979476-CDS-H-elongata_contig110990:1896..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110990 1897..2139 -
1691679100.1241374-CDS-H-elongata_contig110990:1896..21391691679100.1241374-CDS-H-elongata_contig110990:1896..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110990 1897..2139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110990.900.1prot_H-elongata_contig110990.900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110990 1897..2139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110990.900.1

>prot_H-elongata_contig110990.900.1 ID=prot_H-elongata_contig110990.900.1|Name=mRNA_H-elongata_contig110990.900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MYIYIYIYVYIFLRPQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGN
RRNVAKTFVGTPCWMAPEVMEQVGPLLFLFI
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mRNA from alignment at H-elongata_contig110990:1897..2139-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110990.900.1 ID=mRNA_H-elongata_contig110990.900.1|Name=mRNA_H-elongata_contig110990.900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig110990:1897..2139- (Himanthalia elongata Himel1 dioecious)
ATGTATATATATATATATATATATGTTTATATATTTCTCCGGCCGCAGAT
TCACCGCGACATCAAGGCCGGAAACATTCTCCTCGGGGAGGATGGACGTG
TAAAGCTAGCCGACTTTGGGGTGGCCGGCTGGCTAGTGGGCTATGGCAAC
CGTCGGAACGTGGCAAAGACTTTTGTGGGCACTCCGTGCTGGATGGCCCC
AGAGGTAATGGAACAGGTGGGTCCTTTACTGTTTTTATTTATT
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Coding sequence (CDS) from alignment at H-elongata_contig110990:1897..2139-

>mRNA_H-elongata_contig110990.900.1 ID=mRNA_H-elongata_contig110990.900.1|Name=mRNA_H-elongata_contig110990.900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig110990:1897..2139- (Himanthalia elongata Himel1 dioecious)
ATGTATATATATATATATATATATGTTTATATATTTCTCCGGCCGCAGAT
TCACCGCGACATCAAGGCCGGAAACATTCTCCTCGGGGAGGATGGACGTG
TAAAGCTAGCCGACTTTGGGGTGGCCGGCTGGCTAGTGGGCTATGGCAAC
CGTCGGAACGTGGCAAAGACTTTTGTGGGCACTCCGTGCTGGATGGCCCC
AGAGGTAATGGAACAGGTGGGTCCTTTACTGTTTTTATTTATTATGTATA
TATATATATATATATATGTTTATATATTTCTCCGGCCGCAGATTCACCGC
GACATCAAGGCCGGAAACATTCTCCTCGGGGAGGATGGACGTGTAAAGCT
AGCCGACTTTGGGGTGGCCGGCTGGCTAGTGGGCTATGGCAACCGTCGGA
ACGTGGCAAAGACTTTTGTGGGCACTCCGTGCTGGATGGCCCCAGAGGTA
ATGGAACAGGTGGGTCCTTTACTGTTTTTATTTATT
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