mRNA_H-elongata_contig110947.899.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110947.899.1
Unique NamemRNA_H-elongata_contig110947.899.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110947.899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110947contigH-elongata_contig110947:398..931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110947.899.1prot_H-elongata_contig110947.899.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110947 454..798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.9851289-UTR-H-elongata_contig110947:397..4531622929634.9851289-UTR-H-elongata_contig110947:397..453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110947 398..453 +
1691679100.0934756-UTR-H-elongata_contig110947:397..4531691679100.0934756-UTR-H-elongata_contig110947:397..453Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110947 398..453 +
1622929635.0195484-UTR-H-elongata_contig110947:798..9311622929635.0195484-UTR-H-elongata_contig110947:798..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110947 799..931 +
1691679100.11148-UTR-H-elongata_contig110947:798..9311691679100.11148-UTR-H-elongata_contig110947:798..931Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110947 799..931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.0048637-CDS-H-elongata_contig110947:453..7981622929635.0048637-CDS-H-elongata_contig110947:453..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110947 454..798 +
1691679100.1029499-CDS-H-elongata_contig110947:453..7981691679100.1029499-CDS-H-elongata_contig110947:453..798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110947 454..798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110947.899.1

>prot_H-elongata_contig110947.899.1 ID=prot_H-elongata_contig110947.899.1|Name=mRNA_H-elongata_contig110947.899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MGQSNVFKDNEVFANRRGAPLRLMPVNKISLPPPAPENLVSRDGFGRLVL
HQPVHSLNPGCIWCVLQGSFRSSRFPRRCSSMPLTAIGLIPISSYQAVAY
RESADTEPGVLKVA*
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mRNA from alignment at H-elongata_contig110947:398..931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110947.899.1 ID=mRNA_H-elongata_contig110947.899.1|Name=mRNA_H-elongata_contig110947.899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig110947:398..931+ (Himanthalia elongata Himel1 dioecious)
GTCAGCTGAACGTTGCAGCGGCAGTCCGGCGCGGTTGCGTAAGCAACACG
AGTAGGATGGGCCAATCCAACGTCTTCAAGGATAACGAGGTATTTGCAAA
CCGGCGTGGCGCCCCCTTGCGTCTCATGCCGGTTAATAAAATTTCCCTGC
CCCCGCCCGCGCCTGAGAATTTGGTCTCGCGAGATGGGTTCGGCCGTCTC
GTCCTGCATCAGCCTGTTCATTCTCTCAACCCAGGCTGCATCTGGTGTGT
ACTCCAGGGATCCTTTCGATCCTCTCGTTTTCCGCGACGGTGTTCATCTA
TGCCGTTAACCGCCATCGGGCTAATCCCGATTTCATCATATCAAGCAGTT
GCGTACCGAGAGTCCGCCGACACTGAGCCAGGAGTCCTCAAGGTAGCTTG
AGAAACGGATGCAGTCTATTCAGGTAACCCCATGGGACAATTATTGTGCA
CCTCTCTTTTCTCCCACCCACTACGTATTGGTACAATGGGCATGTACGAT
ACAATCAAACAGTATCGGAGTCGAACTACAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig110947:398..931+

>mRNA_H-elongata_contig110947.899.1 ID=mRNA_H-elongata_contig110947.899.1|Name=mRNA_H-elongata_contig110947.899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig110947:398..931+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCAATCCAACGTCTTCAAGGATAACGAGGTATTTGCAAACCGGCG
TGGCGCCCCCTTGCGTCTCATGCCGGTTAATAAAATTTCCCTGCCCCCGC
CCGCGCCTGAGAATTTGGTCTCGCGAGATGGGTTCGGCCGTCTCGTCCTG
CATCAGCCTGTTCATTCTCTCAACCCAGGCTGCATCTGGTGTGTACTCCA
GGGATCCTTTCGATCCTCTCGTTTTCCGCGACGGTGTTCATCTATGCCGT
TAACCGCCATCGGGCTAATCCCGATTTCATCATATCAAGCAGTTGCGTAC
CGAGAGTCCGCCGACACTGAGCCAGGAGTCCTCAAGGTAGCTTGAATGGG
CCAATCCAACGTCTTCAAGGATAACGAGGTATTTGCAAACCGGCGTGGCG
CCCCCTTGCGTCTCATGCCGGTTAATAAAATTTCCCTGCCCCCGCCCGCG
CCTGAGAATTTGGTCTCGCGAGATGGGTTCGGCCGTCTCGTCCTGCATCA
GCCTGTTCATTCTCTCAACCCAGGCTGCATCTGGTGTGTACTCCAGGGAT
CCTTTCGATCCTCTCGTTTTCCGCGACGGTGTTCATCTATGCCGTTAACC
GCCATCGGGCTAATCCCGATTTCATCATATCAAGCAGTTGCGTACCGAGA
GTCCGCCGACACTGAGCCAGGAGTCCTCAAGGTAGCTTGA
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