mRNA_H-elongata_contig11086.892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11086.892.1
Unique NamemRNA_H-elongata_contig11086.892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A6H5JNN3_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN3_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 6.730e-49
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 1
Query:  178 REGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDS--DDPYAK 489
            R+G+PIISKA+VAKHKSAE GG WVTY GGVYDITEFIA+HPGG++RISMA GGALEPFWKLYA+HMKDEVLDILK +RIGSLSLE+MAE + S  D   DDPYAK
Sbjct:   78 RDGFPIISKAEVAKHKSAEAGGVWVTYDGGVYDITEFIASHPGGASRISMAAGGALEPFWKLYALHMKDEVLDILKTLRIGSLSLEDMAE-NKSNADKNGDDPYAK 182          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: D7G747_ECTSI (Similar to MGC83835 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G747_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.140e-46
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = 1
Query:  178 REGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVD--SDDPYAK 489
            R+G+PIISKA+VAKHKSAE GG WVTY GGVYDITEFIA+HPGG++RISMA GGALEPFWKLYA+HMKDEVLDILK +RIGSLSLE+MAE + S  D  SDDPYAK
Sbjct:  130 RDGFPIISKAEVAKHKSAEAGGVWVTYDGGVYDITEFIASHPGGASRISMAAGGALEPFWKLYALHMKDEVLDILKTLRIGSLSLEDMAE-NKSNADKNSDDPYAK 234          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A6T6V9G9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6V9G9_9EUKA)

HSP 1 Score: 122 bits (307), Expect = 1.220e-29
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  169 AKTREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDSDDPYA 486
            A+  + +PI+++A+++KHKS E G  WVTY  GVYDITEF+A HPGG +RI +A GGA++PFW LY  H+ + VL+ILK+ RIG+LS EE AE    T DS DPY+
Sbjct:   73 AQAEKKWPIMTRAEISKHKSKEAG-VWVTYKEGVYDITEFVAQHPGGESRIMLAAGGAIDPFWSLYQQHLVENVLEILKQYRIGTLSAEEAAE----TADSSDPYS 173          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: UPI001FB595D5 (sulfite oxidase, mitochondrial isoform X1 n=2 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB595D5)

HSP 1 Score: 118 bits (295), Expect = 6.810e-28
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = 1
Query:   34 RPFRHSHSSSSRAAGAGLLTAACLAAAASAWNSRRPSPESAAAPPAKTREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDSDDPYA 486
            R ++H+H    R A AGLL A   A  A   ++ +   E  +    K R G PI S+ +V KH+S E G  WVTY GGVYDITEF+A HPGG  +I +A GGALEPFW LYA+H ++ VL+IL E ++G LS+E+  +  A  + S DPYA
Sbjct:   49 RSYQHTHRPRWRHALAGLL-AGSGAVLAYGLHNHKAEQEDISVQNLKKRSGLPIYSQEEVTKHRSLENG-VWVTYKGGVYDITEFVAMHPGGE-KILLAAGGALEPFWALYAVHNQEHVLEILSEYKVGELSVEDQKKQQA--IKSSDPYA 194          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A6P3WE75_CLUHA (Sulfite oxidase n=2 Tax=Clupeidae TaxID=55118 RepID=A0A6P3WE75_CLUHA)

HSP 1 Score: 113 bits (282), Expect = 4.200e-26
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1
Query:  175 TREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDSDDPYA 486
            T+  +PI S+ +V KHKS   G  WVTY GGVYDIT FI+ HPGG  +I +A GGALEPFW LYA+H +D VL+IL E ++G LSLE+  +      DS DPY+
Sbjct:   95 TQSSFPIYSQDEVTKHKSLNEG-VWVTYKGGVYDITTFISMHPGGD-KILLAAGGALEPFWSLYAVHGQDHVLEILSEYKVGELSLEDQKK-QQKNADSSDPYS 195          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A7S0BLY8_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLY8_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 5.750e-26
Identity = 67/134 (50.00%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  109 AAASAW-----NSRRPSPESAAAPPAKTREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSL---EEMAECDASTVDSDDPYA 486
            AAA+AW      +  P+   A+  P +  +G   IS  +V KHKS   GG WVTY GGVYDITEFI NHPGG ++I +A GG LEPFW LYA H ++ V  IL+EMRIG+L     E +A+ D S     DPYA
Sbjct:   52 AAAAAWYVSMHRTTTPAACEASISPGEFVKGLKEISLEEVQKHKSKSDGGIWVTYKGGVYDITEFIENHPGGESKILLAAGGPLEPFWSLYAQHQEEFVYSILEEMRIGNLKASDKEALAQKDES-----DPYA 180          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A3Q3JWX6_MONAL (Sulfite oxidase n=3 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3JWX6_MONAL)

HSP 1 Score: 112 bits (281), Expect = 5.990e-26
Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = 1
Query:   34 RPFRHSHSSSSRAAGAGLLTAACLAAAASAWNSRRPSPESAAAPPAKTREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDSDDPYA 486
            R ++  HS S R A AGLL  A    A    + +    ++      +     P  S+ +V KH+S + G  WVTY GGVYDITEF+A HPGG  +I +A GGALEPFW LYA+H +  VLDIL E ++G LS +++ +    TV+S DPYA
Sbjct:   63 RSYQRGHSPSWRNALAGLLAGAGAVLAYGLHHHKAERADTIRVQTTEKSSSLPTFSQEEVTKHRSLDDG-VWVTYRGGVYDITEFVAMHPGGD-KIMLAAGGALEPFWALYAVHNEKHVLDILSEYKVGELSADDLKK--QQTVESSDPYA 209          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A8C5HGU2_9TELE (Sulfite oxidase n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5HGU2_9TELE)

HSP 1 Score: 112 bits (280), Expect = 7.660e-26
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:  187 YPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDSDDPYA 486
            +P IS+ +V KH+S E G  WVT+ GGVYDITEF+A HPGG  +I +A GGALEPFW LYA+H +D VL+IL E ++G LS+E++ +  A  V S DPY+
Sbjct:   94 FPTISQEEVTKHRSLEDG-VWVTFKGGVYDITEFVAMHPGGD-KILLAAGGALEPFWALYAVHNQDHVLEILSEYKVGELSVEDLRKQQA--VKSSDPYS 189          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A3B4WLC8_SERLL (Sulfite oxidase n=5 Tax=Carangaria TaxID=1489904 RepID=A0A3B4WLC8_SERLL)

HSP 1 Score: 112 bits (280), Expect = 7.740e-26
Identity = 66/151 (43.71%), Postives = 91/151 (60.26%), Query Frame = 1
Query:   34 RPFRHSHSSSSRAAGAGLLTAACLAAAASAWNSRRPSPESAAAPPAKTREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDSDDPYA 486
            R ++H+HS S R   AGLL    +  A      +    ++      +     PI S+ +V KH+S + G  WVTY GGVYDITEF+A HPGG  +I +A GGALEPFW LYA+H ++ VL+IL E ++G LS E++ +  A  V S DPY+
Sbjct:   44 RSYQHTHSPSWRYGLAGLLAGTGVVLAYGLHQHKAEQADTVRVQTIEKTSSLPIFSQEEVTKHRSLQDG-VWVTYKGGVYDITEFVAMHPGGD-KILLAAGGALEPFWALYAVHKQEHVLEILSEYKVGELSAEDVKKQQA--VKSSDPYS 190          
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Match: A0A7S4DTY9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DTY9_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 8.430e-26
Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   61 SSRAAGAGLLTAACLAAAASAWNSRRPSPESAAAPPAKTREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANHPGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAECDASTVDSDDPYA 486
            S R  G  ++ AA  AAA   W +      SA A    + + +P I K++VA+HKSAETG  WVTY  GVYDIT F+  HPGG  RI +A GGA++PFW LY  HM   V+DIL + RIG+L   ++A   + + D DDPY+
Sbjct:   14 SGRRLGMTVIGAAAAAAAGMVWIAC----PSAEAKKKASLDSWPTIKKSEVARHKSAETG-IWVTYKDGVYDITSFVEQHPGGKDRIMLAAGGAIDPFWALYQQHMVQNVMDILTQYRIGTLHPSDVAA--SGSEDLDDPYS 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11086.892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN3_9PHAE6.730e-4979.25Cytochrome b5 heme-binding domain-containing prote... [more]
D7G747_ECTSI1.140e-4680.19Similar to MGC83835 protein n=1 Tax=Ectocarpus sil... [more]
A0A6T6V9G9_9EUKA1.220e-2955.66Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
UPI001FB595D56.810e-2847.68sulfite oxidase, mitochondrial isoform X1 n=2 Tax=... [more]
A0A6P3WE75_CLUHA4.200e-2654.81Sulfite oxidase n=2 Tax=Clupeidae TaxID=55118 RepI... [more]
A0A7S0BLY8_9RHOD5.750e-2650.00Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A3Q3JWX6_MONAL5.990e-2644.37Sulfite oxidase n=3 Tax=Monopterus albus TaxID=437... [more]
A0A8C5HGU2_9TELE7.660e-2656.00Sulfite oxidase n=1 Tax=Gouania willdenowi TaxID=4... [more]
A0A3B4WLC8_SERLL7.740e-2643.71Sulfite oxidase n=5 Tax=Carangaria TaxID=1489904 R... [more]
A0A7S4DTY9_9EUKA8.430e-2646.48Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11086contigH-elongata_contig11086:1162..1815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue3.5e-40
Seed eggNOG ortholog2880.D7G747
Preferred nameSUOX
KEGG rclassRC00168
KEGG koko:K00387
KEGG ReactionR00533
KEGG Pathwayko00920,ko01100,ko01120,map00920,map01100,map01120
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005829,GO:0006790,GO:0007584,GO:0008150,GO:0008152,GO:0008482,GO:0009605,GO:0009987,GO:0009991,GO:0016491,GO:0016667,GO:0016670,GO:0019418,GO:0020037,GO:0031667,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043546,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050662,GO:0050896,GO:0055114,GO:0070013,GO:0070221,GO:0097159,GO:1901363
EggNOG free text desc.sulfite oxidase
EggNOG OGsCOG2041@1,KOG0535@2759,KOG4576@1,KOG4576@2759
EC1.8.3.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOxidoreductase, molybdopterin-binding domain
Ec32 orthologEc-01_011070.1
Exons2
Model size493
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.3814328-CDS-H-elongata_contig11086:1161..15481622929634.3814328-CDS-H-elongata_contig11086:1161..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11086 1162..1548 +
1691679099.7801454-CDS-H-elongata_contig11086:1161..15481691679099.7801454-CDS-H-elongata_contig11086:1161..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11086 1162..1548 +
1622929634.3952882-CDS-H-elongata_contig11086:1709..18141622929634.3952882-CDS-H-elongata_contig11086:1709..1814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11086 1710..1814 +
1691679099.797247-CDS-H-elongata_contig11086:1709..18141691679099.797247-CDS-H-elongata_contig11086:1709..1814Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11086 1710..1814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11086.892.1prot_H-elongata_contig11086.892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11086 1162..1814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11086.892.1

>prot_H-elongata_contig11086.892.1 ID=prot_H-elongata_contig11086.892.1|Name=mRNA_H-elongata_contig11086.892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
EPRRATAAQLFRPFRHSHSSSSRAAGAGLLTAACLAAAASAWNSRRPSPE
SAAAPPAKTREGYPIISKAQVAKHKSAETGGAWVTYAGGVYDITEFIANH
PGGSTRISMAVGGALEPFWKLYAIHMKDEVLDILKEMRIGSLSLEEMAEC
DASTVDSDDPYAKA
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mRNA from alignment at H-elongata_contig11086:1162..1815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11086.892.1 ID=mRNA_H-elongata_contig11086.892.1|Name=mRNA_H-elongata_contig11086.892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=654bp|location=Sequence derived from alignment at H-elongata_contig11086:1162..1815+ (Himanthalia elongata Himel1 dioecious)
GAACCTCGCCGTGCAACAGCGGCTCAACTCTTCCGACCTTTTCGACACTC GCATAGCTCCTCCTCAAGGGCAGCGGGAGCGGGGCTGCTCACGGCGGCAT GCCTCGCCGCTGCAGCCAGCGCGTGGAACTCCCGACGGCCTTCCCCCGAG AGTGCGGCCGCGCCACCCGCGAAAACGCGCGAAGGCTACCCTATCATCTC CAAAGCTCAGGTTGCGAAGCATAAGAGCGCAGAGACCGGCGGGGCGTGGG TCACCTACGCAGGAGGCGTGTACGACATCACGGAGTTCATCGCTAACCAC CCGGGAGGTTCTACGAGGATTAGCATGGCGGTGGGTGGGGCCCTAGAGCC TTTCTGGAAGCTCTACGCCATTCACATGAAGGACGAGGTAAATATTGAGG TTCTCTTGTGGAGGCAGGAGACACTAGCCCTGACTAAATGATACCGCCGT ATCGTGGAGCTGCATATGCTTGGGTGTGTGTAGGTTTCACATGTGTGTAC GCCGCTCTCGCTTTTTTTTGTCGTTGCTCGATTTCCTGTGACCCGTAGGT GCTCGACATCCTCAAGGAGATGCGAATAGGCAGCCTCTCGTTGGAGGAAA TGGCGGAATGTGACGCCAGCACCGTAGACAGCGACGACCCTTATGCCAAG GCGA
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Coding sequence (CDS) from alignment at H-elongata_contig11086:1162..1815+

>mRNA_H-elongata_contig11086.892.1 ID=mRNA_H-elongata_contig11086.892.1|Name=mRNA_H-elongata_contig11086.892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig11086:1162..1815+ (Himanthalia elongata Himel1 dioecious)
GAACCTCGCCGTGCAACAGCGGCTCAACTCTTCCGACCTTTTCGACACTC
GCATAGCTCCTCCTCAAGGGCAGCGGGAGCGGGGCTGCTCACGGCGGCAT
GCCTCGCCGCTGCAGCCAGCGCGTGGAACTCCCGACGGCCTTCCCCCGAG
AGTGCGGCCGCGCCACCCGCGAAAACGCGCGAAGGCTACCCTATCATCTC
CAAAGCTCAGGTTGCGAAGCATAAGAGCGCAGAGACCGGCGGGGCGTGGG
TCACCTACGCAGGAGGCGTGTACGACATCACGGAGTTCATCGCTAACCAC
CCGGGAGGTTCTACGAGGATTAGCATGGCGGTGGGTGGGGCCCTAGAGCC
TTTCTGGAAGCTCTACGCCATTCACATGAAGGACGAGGAACCTCGCCGTG
CAACAGCGGCTCAACTCTTCCGACCTTTTCGACACTCGCATAGCTCCTCC
TCAAGGGCAGCGGGAGCGGGGCTGCTCACGGCGGCATGCCTCGCCGCTGC
AGCCAGCGCGTGGAACTCCCGACGGCCTTCCCCCGAGAGTGCGGCCGCGC
CACCCGCGAAAACGCGCGAAGGCTACCCTATCATCTCCAAAGCTCAGGTT
GCGAAGCATAAGAGCGCAGAGACCGGCGGGGCGTGGGTCACCTACGCAGG
AGGCGTGTACGACATCACGGAGTTCATCGCTAACCACCCGGGAGGTTCTA
CGAGGATTAGCATGGCGGTGGGTGGGGCCCTAGAGCCTTTCTGGAAGCTC
TACGCCATTCACATGAAGGACGAGGTGCTCGACATCCTCAAGGAGATGCG
AATAGGCAGCCTCTCGTTGGAGGAAATGGCGGAATGTGACGCCAGCACCG
TAGACAGCGACGACCCTTATGCCAAGGCGGTGCTCGACATCCTCAAGGAG
ATGCGAATAGGCAGCCTCTCGTTGGAGGAAATGGCGGAATGTGACGCCAG
CACCGTAGACAGCGACGACCCTTATGCCAAGGCG
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