mRNA_H-elongata_contig110846.890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110846.890.1
Unique NamemRNA_H-elongata_contig110846.890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110846.890.1 vs. uniprot
Match: D8LDL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.800e-22
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:  310 CERPYAFTNESDVACVELVNYEDREAGGGAFYDEEGCAWQTRGMSSIGCDFGGVARCRLCVFNRALYSAVILNGLEV 540
            CERPY ++NES++ CV++V   D+ +G GAFYDEEGC      +S +GC  GGV  CRLCVFNR L+S  IL G EV
Sbjct:   39 CERPYTWSNESEIPCVDMVTAVDKASGAGAFYDEEGCGPDAESISVVGCAHGGVGNCRLCVFNRGLFSETILGGEEV 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110846.890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDL0_ECTSI8.800e-2255.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110846contigH-elongata_contig110846:81..1999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110846.890.1prot_H-elongata_contig110846.890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110846 81..1999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.2618694-CDS-H-elongata_contig110846:80..4351622929634.2618694-CDS-H-elongata_contig110846:80..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110846 81..435 +
1691679099.7130733-CDS-H-elongata_contig110846:80..4351691679099.7130733-CDS-H-elongata_contig110846:80..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110846 81..435 +
1622929634.2821972-CDS-H-elongata_contig110846:1612..17241622929634.2821972-CDS-H-elongata_contig110846:1612..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110846 1613..1724 +
1691679099.7241948-CDS-H-elongata_contig110846:1612..17241691679099.7241948-CDS-H-elongata_contig110846:1612..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110846 1613..1724 +
1622929634.2959363-CDS-H-elongata_contig110846:1926..19991622929634.2959363-CDS-H-elongata_contig110846:1926..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110846 1927..1999 +
1691679099.7334418-CDS-H-elongata_contig110846:1926..19991691679099.7334418-CDS-H-elongata_contig110846:1926..1999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110846 1927..1999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110846.890.1

>prot_H-elongata_contig110846.890.1 ID=prot_H-elongata_contig110846.890.1|Name=mRNA_H-elongata_contig110846.890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
DDDAPEETPAPTTPGPTESPTPEPTPAPTQAPTTQSPTAMPTTPSPTEAP
TLAPTRSPTLSPTPSPTTAPTLAPTPQPTFSKAPTLAPTPAPTPPPTFSY
SSYCERPYAFTNESDVACVELVNYEDREAGGGAFYDEEGCAWQTRGMSSI
GCDFGGVARCRLCVFNRALYSAVILNGLEV
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mRNA from alignment at H-elongata_contig110846:81..1999+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110846.890.1 ID=mRNA_H-elongata_contig110846.890.1|Name=mRNA_H-elongata_contig110846.890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1919bp|location=Sequence derived from alignment at H-elongata_contig110846:81..1999+ (Himanthalia elongata Himel1 dioecious)
GACGACGATGCTCCAGAAGAGACTCCCGCACCAACGACTCCAGGTCCGAC
AGAGAGCCCCACTCCAGAACCGACGCCGGCTCCAACTCAAGCTCCCACAA
CACAATCTCCCACAGCTATGCCAACCACGCCCTCTCCAACGGAGGCCCCG
ACGCTTGCACCAACTCGATCACCGACCCTTTCTCCTACCCCATCGCCGAC
GACAGCCCCCACACTTGCGCCAACGCCCCAGCCAACCTTCTCGAAGGCGC
CTACCCTGGCGCCCACGCCAGCACCCACGCCACCTCCGACCTTCTCCTAC
AGTAGCTACTGTGAAAGACCGTACGCTTTCACCAACGAGAGCGACGTTGC
GTGCGGTGAGTCGTTATAGAAAGAGCACGGACGCTGCTGTATTACCCCAC
TGTTTGTAGTTATTGTAGCACATGTAGTCCGCGATAGTTTATTCTCGAGG
ATTCTGTTTGGGCTCCTCGGCATACCAGAGTGGTTGCCAGCGTATAAATT
ACGGTAGCTCTACAACTACTAATAGTAGCTACAAAGTAGCTGTGGTGAGA
TTACCACAGAGAGTTCAACCTGTCTGTTTTGGGTTGTTCTGTTTTAAGAA
TTGCCATCAACATCTCCTGTTGATTTTGGCATTCTACTGTACCGGAACAT
TTCGCGCACGCATGGGAGAAGAAGCCTTTCGATTTGGAGTTGCAGCCTTT
GTGGGCTGTTGACAGCATAAGCACTATTAGCGGTGAAGACCACGAGGGGA
AAAAAAAAAGTTATTTTCCATGCGCAAGGAAAGAAAAGAAGACCGTATAC
TTCTCGTCCGATACCCACTTCTGATATCGAGGGTCCGCGGGTGTCCCAAG
CAGACTATTTTCGAATCGTAGGATAGCCATGATGTGTTCTTAAATAATAT
GAGCATATGCACCTTAGAGCTGAACGATTATCAGCATTAGGGTTGTATTA
GGTGTGCTCCACTTGTGGCGTTTGCACGGAGTGTCAACATTTTCCCGTTT
GAGCCTACGAGTGTCACCCGAGAACTCATATTACCGTGACTTCCTTGCGC
GACGACGGGCGGACGTTCGAAGTCATCGACGTGCTGCGCCATTCGGTATT
AACGAGACAGGCTCAAAAAAACAAGTTCGAGCACTTTCAACAATTTATTC
CGCACCAATTTTTTCTGTTCTCGCGTGCCGCGAATCATTATCTTTACGTC
CAGCAGTAGTAGAGGAACCTCGCTGCGGCAGGTACTGTACATAGTTCTGC
AAATAACATGCCATCGTAGCGGTTGAACTGACGCCTTCTCCTTCCCATCG
CCGGCAGCGTGCCGCCACACGTACGTACGTACCTCTATATTAGGAAAGAG
CATTTAACGGGCAGCCCTCCACAAGTTCCGAAGAGTATCCCATAGCAAGA
AGTCGTATGCATGACACGCACGAGAAAGCGATGCGAAGTATACAAATTAT
ATATTACCCGCTATCCGGCACTAACCTGATGTTTTTTCGTCAATTATTTC
TTCGGCACTAACCTCTCCGCACATCGCTACAGTGGAGCTCGTGAACTATG
AGGACAGAGAGGCTGGAGGAGGGGCATTTTACGATGAGGAGGGCTGTGCG
TGGCAGACTCGCGGCATGAGCTCAATCGGCTGCGATTTCGGCGGGTGAGA
TCTTCGGGATCCCTAAATACGACCACTTTGACCGCGTCGAAGACGAGCTC
TCGATCCCATTTTTTTCCCCCTCTAGTCCACATGATACCGAGAGTAGAAA
CGCCGGTAAATCATTTTTCTTTTGACAGAGTCTCTCGTTCTTCGTGTTTT
TTGCTAACGTGCTTGCTGAATCTGGCCGAATCCCGCTCAAATACAGGGTT
GCTCGCTGCAGGCTGTGCGTGTTCAACCGCGCTTTGTACAGCGCCGTCAT
ATTAAATGGGCTAGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig110846:81..1999+

>mRNA_H-elongata_contig110846.890.1 ID=mRNA_H-elongata_contig110846.890.1|Name=mRNA_H-elongata_contig110846.890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig110846:81..1999+ (Himanthalia elongata Himel1 dioecious)
GACGACGATGCTCCAGAAGAGACTCCCGCACCAACGACTCCAGGTCCGAC
AGAGAGCCCCACTCCAGAACCGACGCCGGCTCCAACTCAAGCTCCCACAA
CACAATCTCCCACAGCTATGCCAACCACGCCCTCTCCAACGGAGGCCCCG
ACGCTTGCACCAACTCGATCACCGACCCTTTCTCCTACCCCATCGCCGAC
GACAGCCCCCACACTTGCGCCAACGCCCCAGCCAACCTTCTCGAAGGCGC
CTACCCTGGCGCCCACGCCAGCACCCACGCCACCTCCGACCTTCTCCTAC
AGTAGCTACTGTGAAAGACCGTACGCTTTCACCAACGAGAGCGACGTTGC
GTGCGGACGACGATGCTCCAGAAGAGACTCCCGCACCAACGACTCCAGGT
CCGACAGAGAGCCCCACTCCAGAACCGACGCCGGCTCCAACTCAAGCTCC
CACAACACAATCTCCCACAGCTATGCCAACCACGCCCTCTCCAACGGAGG
CCCCGACGCTTGCACCAACTCGATCACCGACCCTTTCTCCTACCCCATCG
CCGACGACAGCCCCCACACTTGCGCCAACGCCCCAGCCAACCTTCTCGAA
GGCGCCTACCCTGGCGCCCACGCCAGCACCCACGCCACCTCCGACCTTCT
CCTACAGTAGCTACTGTGAAAGACCGTACGCTTTCACCAACGAGAGCGAC
GTTGCGTGCGTGGAGCTCGTGAACTATGAGGACAGAGAGGCTGGAGGAGG
GGCATTTTACGATGAGGAGGGCTGTGCGTGGCAGACTCGCGGCATGAGCT
CAATCGGCTGCGATTTCGGCGGTGGAGCTCGTGAACTATGAGGACAGAGA
GGCTGGAGGAGGGGCATTTTACGATGAGGAGGGCTGTGCGTGGCAGACTC
GCGGCATGAGCTCAATCGGCTGCGATTTCGGCGGGGTTGCTCGCTGCAGG
CTGTGCGTGTTCAACCGCGCTTTGTACAGCGCCGTCATATTAAATGGGCT
AGAGGTAGGTTGCTCGCTGCAGGCTGTGCGTGTTCAACCGCGCTTTGTAC
AGCGCCGTCATATTAAATGGGCTAGAGGTA
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