mRNA_H-elongata_contig110687.883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110687.883.1
Unique NamemRNA_H-elongata_contig110687.883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110687.883.1 vs. uniprot
Match: D7G0J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 RSVDVVTALATPLTYEGLIDDLIGIENG 84
            R VD+VTALATPLTYEGLIDDLIGIENG
Sbjct:  257 RGVDLVTALATPLTYEGLIDDLIGIENG 284
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BLAST of mRNA_H-elongata_contig110687.883.1 vs. uniprot
Match: A0A6H5L2P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.560e-7
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 RSVDVVTALATPLTYEGLIDDLIGIENG 84
            R VD+VTA+ATPLTYEGLIDDLIGIENG
Sbjct:  257 RGVDLVTAMATPLTYEGLIDDLIGIENG 284
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BLAST of mRNA_H-elongata_contig110687.883.1 vs. uniprot
Match: A0A077QU67_9BASI (Probable vacuolar sorting protein (HbrA) n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077QU67_9BASI)

HSP 1 Score: 50.1 bits (118), Expect = 8.180e-6
Identity = 25/50 (50.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    1 RSVDVVTALATPLTYEGLIDDLIGIENG---------LGQKQNTCGVGIH 123
            RSVD  T L T LTYEGL+D+++GI +G          GQ QN  GVG H
Sbjct:  299 RSVDYATPLCTQLTYEGLVDEVVGISSGHVEVDPSLLTGQSQNAAGVGSH 348
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BLAST of mRNA_H-elongata_contig110687.883.1 vs. uniprot
Match: A0A7S2PEM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PEM1_9STRA)

HSP 1 Score: 45.4 bits (106), Expect = 7.480e-5
Identity = 18/28 (64.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 RSVDVVTALATPLTYEGLIDDLIGIENG 84
            R++D+VT + TPLTYEGL+DD+IG++NG
Sbjct:   54 RTLDLVTPMLTPLTYEGLVDDIIGMKNG 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110687.883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0J5_ECTSI1.910e-792.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2P5_9PHAE3.560e-789.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A077QU67_9BASI8.180e-650.00Probable vacuolar sorting protein (HbrA) n=1 Tax=M... [more]
A0A7S2PEM1_9STRA7.480e-564.29Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110687contigH-elongata_contig110687:1833..1967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.4753761-CDS-H-elongata_contig110687:1832..19671622929633.4753761-CDS-H-elongata_contig110687:1832..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110687 1833..1967 -
1691679099.4987042-CDS-H-elongata_contig110687:1832..19671691679099.4987042-CDS-H-elongata_contig110687:1832..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110687 1833..1967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110687.883.1prot_H-elongata_contig110687.883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110687 1833..1967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110687.883.1

>prot_H-elongata_contig110687.883.1 ID=prot_H-elongata_contig110687.883.1|Name=mRNA_H-elongata_contig110687.883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
RSVDVVTALATPLTYEGLIDDLIGIENGLGQKQNTCGVGIHNKK*
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mRNA from alignment at H-elongata_contig110687:1833..1967-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110687.883.1 ID=mRNA_H-elongata_contig110687.883.1|Name=mRNA_H-elongata_contig110687.883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig110687:1833..1967- (Himanthalia elongata Himel1 dioecious)
AGGAGCGTTGACGTGGTAACTGCTCTCGCGACGCCGCTGACGTACGAGGG
CTTAATCGACGACCTCATCGGGATCGAAAACGGGTTAGGCCAAAAACAAA
ATACATGCGGAGTAGGTATACACAATAAAAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig110687:1833..1967-

>mRNA_H-elongata_contig110687.883.1 ID=mRNA_H-elongata_contig110687.883.1|Name=mRNA_H-elongata_contig110687.883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig110687:1833..1967- (Himanthalia elongata Himel1 dioecious)
AGGAGCGTTGACGTGGTAACTGCTCTCGCGACGCCGCTGACGTACGAGGG
CTTAATCGACGACCTCATCGGGATCGAAAACGGGTTAGGCCAAAAACAAA
ATACATGCGGAGTAGGTATACACAATAAAAAGTAAAGGAGCGTTGACGTG
GTAACTGCTCTCGCGACGCCGCTGACGTACGAGGGCTTAATCGACGACCT
CATCGGGATCGAAAACGGGTTAGGCCAAAAACAAAATACATGCGGAGTAG
GTATACACAATAAAAAGTAA
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