mRNA_H-elongata_contig110609.879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110609.879.1
Unique NamemRNA_H-elongata_contig110609.879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A6H5L407_9PHAE (Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L407_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.930e-16
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 QGFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHK 141
            QGFVAKRDV++V RS KG+GT+E +LVNTLC RTKKQ+D VDLLYHK
Sbjct:    3 QGFVAKRDVDVVHRSVKGIGTNEGNLVNTLCNRTKKQIDAVDLLYHK 49
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BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: D7FJE4_ECTSI (Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.830e-14
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 QGFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHK 141
            +GFVA+RDV++V RS KG+GT E +L+NTLC RTKKQ+D VDLLYH+
Sbjct:   31 KGFVAERDVDVVHRSIKGIGTKEGNLINTLCNRTKKQIDAVDLLYHE 77
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BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: ANXC1_CRYNH (Annexin C1 n=10 Tax=Cryptococcus TaxID=5206 RepID=ANXC1_CRYNH)

HSP 1 Score: 52.0 bits (123), Expect = 2.880e-6
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 GFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIASVL 171
            G+ A+ D E +R++TKG GTDE ++++TL      Q+DV+   Y + VGRS+ S L
Sbjct:  160 GYDARFDAERIRKATKGFGTDERTIIDTLSPLDAFQMDVLSRTYEQTVGRSLKSTL 215
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BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A427YQV9_9TREE (Uncharacterized protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YQV9_9TREE)

HSP 1 Score: 50.4 bits (119), Expect = 1.010e-5
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 GFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIASVL 171
            G+ A+ D E +R++TKG GTDE +L++TL      Q+D++   Y + VGRS+ + L
Sbjct:  148 GYNAQFDAERIRKATKGFGTDERTLIDTLAPLDAFQMDLLSRTYEQTVGRSLKTTL 203
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BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A2H2JJN1_CAEJA (Uncharacterized protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2JJN1_CAEJA)

HSP 1 Score: 48.1 bits (113), Expect = 2.630e-5
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   22 DVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIAS 165
            DV+ ++ + KGLGTDEA L+  LC RT  QL  + + Y K+ G+S+ S
Sbjct:   89 DVKQLKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVTYEKQYGKSLES 136
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BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A427Y677_9TREE (Uncharacterized protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427Y677_9TREE)

HSP 1 Score: 48.9 bits (115), Expect = 2.860e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 QGFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIASVL 171
            QG+  + D E +R++TKG GTDE +LV+TL      Q+DV+   + + VGRS+   L
Sbjct:  169 QGYNPQFDAERIRKATKGFGTDERTLVDTLAPLDAFQVDVLSRTFEQTVGRSLKLTL 225
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BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A1B9HXA2_9TREE (Annexin n=1 Tax=Kwoniella pini CBS 10737 TaxID=1296096 RepID=A0A1B9HXA2_9TREE)

HSP 1 Score: 48.9 bits (115), Expect = 3.530e-5
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    4 GFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIASVL 171
            G+ A+ D E +R++TKG GTDE +L++TL      Q+DV+   Y + VGR +   L
Sbjct:  159 GYNAQFDAERIRKATKGFGTDERTLIDTLVPLDAFQIDVLSRTYEQTVGRPLKKTL 214
[Close]
BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A2H2JER2_CAEJA (Annexin n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2JER2_CAEJA)

HSP 1 Score: 48.1 bits (113), Expect = 3.820e-5
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   22 DVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIAS 165
            DV+ ++ + KGLGTDEA L+  LC RT  QL  + + Y K+ G+S+ S
Sbjct:    8 DVKQLKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVTYEKQYGKSLES 55
[Close]
BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A2H2I4Y7_CAEJA (Annexin n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2I4Y7_CAEJA)

HSP 1 Score: 48.1 bits (113), Expect = 6.400e-5
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   22 DVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIAS 165
            DV+ ++ + KGLGTDEA L+  LC RT  QL  + + Y K+ G+S+ S
Sbjct:   94 DVKQLKAAMKGLGTDEAVLIEILCSRTVDQLRAIRVTYEKQYGKSLES 141
[Close]
BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Match: A0A1S3GFN4_DIPOR (Annexin n=3 Tax=Heteromyidae TaxID=10015 RepID=A0A1S3GFN4_DIPOR)

HSP 1 Score: 48.1 bits (113), Expect = 6.470e-5
Identity = 22/57 (38.60%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    1 QGFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVGRSIASVL 171
            QGF A RD + + ++ KG+GTDEA+++  L  RT +Q   +   Y  K G+ +  VL
Sbjct:   12 QGFDADRDAKKLYKACKGMGTDEAAIIEVLSSRTSEQRQQIKQKYKTKYGKDLEEVL 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110609.879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L407_9PHAE1.930e-1676.60Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FJE4_ECTSI2.830e-1468.09Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
ANXC1_CRYNH2.880e-642.86Annexin C1 n=10 Tax=Cryptococcus TaxID=5206 RepID=... [more]
A0A427YQV9_9TREE1.010e-541.07Uncharacterized protein n=1 Tax=Saitozyma podzolic... [more]
A0A2H2JJN1_CAEJA2.630e-545.83Uncharacterized protein n=1 Tax=Caenorhabditis jap... [more]
A0A427Y677_9TREE2.860e-542.11Uncharacterized protein n=1 Tax=Apiotrichum porosu... [more]
A0A1B9HXA2_9TREE3.530e-541.07Annexin n=1 Tax=Kwoniella pini CBS 10737 TaxID=129... [more]
A0A2H2JER2_CAEJA3.820e-545.83Annexin n=1 Tax=Caenorhabditis japonica TaxID=2816... [more]
A0A2H2I4Y7_CAEJA6.400e-545.83Annexin n=1 Tax=Caenorhabditis japonica TaxID=2816... [more]
A0A1S3GFN4_DIPOR6.470e-538.60Annexin n=3 Tax=Heteromyidae TaxID=10015 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110609contigH-elongata_contig110609:1796..1966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D7FJE4
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.186831-CDS-H-elongata_contig110609:1795..19661622929633.186831-CDS-H-elongata_contig110609:1795..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110609 1796..1966 +
1691679099.393403-CDS-H-elongata_contig110609:1795..19661691679099.393403-CDS-H-elongata_contig110609:1795..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110609 1796..1966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110609.879.1prot_H-elongata_contig110609.879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110609 1796..1966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110609.879.1

>prot_H-elongata_contig110609.879.1 ID=prot_H-elongata_contig110609.879.1|Name=mRNA_H-elongata_contig110609.879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QGFVAKRDVEIVRRSTKGLGTDEASLVNTLCGRTKKQLDVVDLLYHKKVG
RSIASVL
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mRNA from alignment at H-elongata_contig110609:1796..1966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110609.879.1 ID=mRNA_H-elongata_contig110609.879.1|Name=mRNA_H-elongata_contig110609.879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig110609:1796..1966+ (Himanthalia elongata Himel1 dioecious)
CAGGGGTTCGTGGCGAAGAGGGATGTGGAAATCGTGAGGCGGTCAACCAA
GGGCCTAGGCACCGATGAGGCCAGCCTGGTAAACACGCTCTGCGGCCGTA
CGAAGAAGCAGCTCGACGTCGTGGACCTTCTTTACCACAAGAAGGTGGGC
CGTAGTATTGCGAGCGTGCTT
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Coding sequence (CDS) from alignment at H-elongata_contig110609:1796..1966+

>mRNA_H-elongata_contig110609.879.1 ID=mRNA_H-elongata_contig110609.879.1|Name=mRNA_H-elongata_contig110609.879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig110609:1796..1966+ (Himanthalia elongata Himel1 dioecious)
CAGGGGTTCGTGGCGAAGAGGGATGTGGAAATCGTGAGGCGGTCAACCAA
GGGCCTAGGCACCGATGAGGCCAGCCTGGTAAACACGCTCTGCGGCCGTA
CGAAGAAGCAGCTCGACGTCGTGGACCTTCTTTACCACAAGAAGGTGGGC
CGTAGTATTGCGAGCGTGCTTCAGGGGTTCGTGGCGAAGAGGGATGTGGA
AATCGTGAGGCGGTCAACCAAGGGCCTAGGCACCGATGAGGCCAGCCTGG
TAAACACGCTCTGCGGCCGTACGAAGAAGCAGCTCGACGTCGTGGACCTT
CTTTACCACAAGAAGGTGGGCCGTAGTATTGCGAGCGTGCTT
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