mRNA_H-elongata_contig110558.875.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: D7FPK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK9_ECTSI) HSP 1 Score: 258 bits (660), Expect = 1.950e-77 Identity = 117/148 (79.05%), Postives = 132/148 (89.19%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASGVPF 447
+VCVIYRGQ LVDL AG QGP+D RPV+PST+FCVFSAGKAVCSTAVH+L DRG LRYDQR+++LWPEFA NGK TTVRH+LTHSTGLQHAFP+K TF V DWG++QR LE+A PAWPPGSRASYHYFTFGWLVAAVVE+ +GVPF
Sbjct: 547 QVCVIYRGQTLVDLCAGTQGPVDPRPVRPSTLFCVFSAGKAVCSTAVHLLADRGLLRYDQRLSELWPEFASNGKLTTTVRHVLTHSTGLQHAFPDKATFDKVCDWGEVQRTLEDAHPAWPPGSRASYHYFTFGWLVAAVVERVAGVPF 694
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A6H5KBB7_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB7_9PHAE) HSP 1 Score: 259 bits (661), Expect = 3.970e-77 Identity = 117/148 (79.05%), Postives = 133/148 (89.86%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASGVPF 447
+VCVIYRGQ LVDL AG QGP+D RPV+PST+FCVFSAGKAVCSTAVH+L DRG LRYDQR+++LWPEFA NGK +TTVRH+LTHSTGLQHAFP+K TF V DWG++QR LE+A PAWPPGSRASYHYFTFGWLVAAVVE+ +GVPF
Sbjct: 987 QVCVIYRGQTLVDLCAGTQGPVDPRPVRPSTLFCVFSAGKAVCSTAVHLLADRGLLRYDQRLSELWPEFATNGKLNTTVRHVLTHSTGLQHAFPDKATFDRVCDWGEVQRTLEDAHPAWPPGSRASYHYFTFGWLVAAVVERVAGVPF 1134
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A7S2V6Z4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z4_9STRA) HSP 1 Score: 194 bits (493), Expect = 3.620e-56 Identity = 86/145 (59.31%), Postives = 108/145 (74.48%), Query Frame = 1
Query: 1 SKVCVIYRG-QMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKA 432
++VCV RG LVD GRQGP+D RPV P T+F S KA+ STA+H +VD+G LRYD V+ +WPEF RNGKE+ T+RH+LTHSTGLQH PE PTF ++ DW Q++LEEA P W PG+R SYHYFT+GWLV +++EKA
Sbjct: 334 AQVCVYGRGGARLVDTCCGRQGPVDARPVTPRTLFPAMSISKALLSTALHAMVDQGALRYDDLVSSVWPEFGRNGKEECTIRHVLTHSTGLQHVLPENPTFDALCDWKGCQKLLEEAKPIWKPGARCSYHYFTYGWLVGSIIEKA 478
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A7S3XWD7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWD7_HETAK) HSP 1 Score: 189 bits (479), Expect = 5.320e-53 Identity = 90/151 (59.60%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASGVPFEEA 456
+V V G LV AG QGP+D RPV P T+FC S KAV +TAVH L DRG++ YD VA WP FARNGK TVRH LTH GLQHA + PTF + DW K++ LEEA P W PGSR SYHYFTFGWL+A VVE ASG+P EA
Sbjct: 528 QVAVRRHGVPLVATCAGTQGPVDPRPVTPRTLFCALSVSKAVLATAVHALADRGKVDYDAPVAAYWPAFARNGKAGVTVRHALTHRAGLQHALLDAPTFDDLCDWPKVRAALEEAAPVWEPGSRCSYHYFTFGWLLAGVVEGASGLPLAEA 678
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A7S3XWC8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWC8_HETAK) HSP 1 Score: 189 bits (479), Expect = 7.330e-53 Identity = 90/151 (59.60%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASGVPFEEA 456
+V V G LV AG QGP+D RPV P T+FC S KAV +TAVH L DRG++ YD VA WP FARNGK TVRH LTH GLQHA + PTF + DW K++ LEEA P W PGSR SYHYFTFGWL+A VVE ASG+P EA
Sbjct: 528 QVAVRRHGVPLVATCAGTQGPVDPRPVTPRTLFCALSVSKAVLATAVHALADRGKVDYDAPVAAYWPAFARNGKAGVTVRHALTHRAGLQHALLDAPTFDDLCDWPKVRAALEEAAPVWEPGSRCSYHYFTFGWLLAGVVEGASGLPLAEA 678
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A835ZC02_9STRA (Beta-lactamase/transpeptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC02_9STRA) HSP 1 Score: 172 bits (437), Expect = 5.140e-47 Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASGVPFEE 453
+VCV G LVD AG QGPID RPV P T+F FS K V + A+H L+DRG D +A WP FA+ GK TT+RH+LTH+TGLQHA P + DW + LE+A P WPPG+R++YHYF FG+L A VEK SG+PF E
Sbjct: 494 QVCVFRHGACLVDTCAGAQGPIDPRPVTPDTLFPAFSVTKVVAAAALHALIDRGAAALDTPLASFWPAFAKRGKGATTLRHVLTHATGLQHALPRDANLRVLCDWRAVLAALEDAAPVWPPGTRSAYHYFNFGFLAGACVEKLSGMPFGE 643
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: UPI000417EA8C (beta-lactamase family protein n=1 Tax=Hamadaea tsunoensis TaxID=53368 RepID=UPI000417EA8C) HSP 1 Score: 145 bits (366), Expect = 2.610e-39 Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASGVPFEEA 456
+V +RG+++VD AG R ST F +S GKA+ +T VH+L +RG+L YD R+AD+WPE+AR+GKE TT+RH LTH+ G+ H PE T DW +M +L + P W PGSR YH +TFGWL+ V +A+G EA
Sbjct: 33 QVAAYHRGRLVVDAVAGLADSGTGRAALASTPFFSYSTGKALTATVVHVLAERGELDYDLRIADVWPEYARHGKESTTLRHALTHTAGVPH-LPEDTTPEDFVDWDRMCAVLADTRPLWTPGSRNGYHAWTFGWLIGETVRRATGRTLREA 182
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A8J3KYR9_9ACTN (Esterase n=1 Tax=Catellatospora coxensis TaxID=310354 RepID=A0A8J3KYR9_9ACTN) HSP 1 Score: 144 bits (362), Expect = 1.080e-38 Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASG 438
+V G +VD AG P R V P T F FS GKA+ ST VH+L ++G+L YD R+A++WPEFARNGK T+RH+LTH+ GL A P T ++DWG+M +L + P W PG+ YH +T+GWLV V + +G
Sbjct: 27 QVAAYLHGAPIVDAVAGLADPATGRAVTPGTPFFSFSTGKALTSTVVHVLAEQGRLDYDLRLAEVWPEFARNGKSGVTLRHVLTHTAGLP-ALPPDVTAADLADWGRMCAILADTAPEWEPGTAHGYHVWTYGWLVGETVRRVTG 170
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A4Q7ZLC9_9ACTN (CubicO group peptidase (Beta-lactamase class C family) n=1 Tax=Krasilnikovia cinnamomea TaxID=349313 RepID=A0A4Q7ZLC9_9ACTN) HSP 1 Score: 142 bits (359), Expect = 2.660e-38 Identity = 64/147 (43.54%), Postives = 94/147 (63.95%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASGVP 444
+V G+++V+ +G P+ +PV P T F +S GK + +TAVH+LV+RG L YD R+AD+WPE+ R+GKE TT+RH+L+HS G+ A P + DW +M R + + P W PG+R YH +T+GWLV V +A+G P
Sbjct: 29 QVAAYLDGRLIVNAVSGMANPLTGQPVTPDTPFFGYSTGKGLAATAVHVLVERGDLDYDLRLADVWPEYGRHGKEATTLRHVLSHSAGVP-ALPSYTMPEDLLDWDRMCRTIASSAPLWEPGTRHGYHMWTWGWLVGETVHRATGRP 174
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Match: A0A1H2J830_9ACTN (CubicO group peptidase, beta-lactamase class C family n=1 Tax=Jiangella alkaliphila TaxID=419479 RepID=A0A1H2J830_9ACTN) HSP 1 Score: 139 bits (351), Expect = 3.880e-37 Identity = 65/145 (44.83%), Postives = 94/145 (64.83%), Query Frame = 1
Query: 4 KVCVIYRGQMLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDQRVADLWPEFARNGKEDTTVRHILTHSTGLQHAFPEKPTFGSVSDWGKMQRMLEEAVPAWPPGSRASYHYFTFGWLVAAVVEKASG 438
+V V++RG+++VD AG + PV+P T+F SA K + ST H+L +RG+L YD R AD+WPEFAR+GK+D T+RH+L H+ G+ A P T + DW M +L +A P WP G+R YH TFG+L+ +V +A+G
Sbjct: 26 QVAVLHRGELVVDAVAGTRDAARSEPVEPDTLFWSASAVKGIASTVAHVLAERGELTYDLRAADVWPEFARHGKDDITLRHVLLHTAGVP-APPYDTTVEQLCDWEHMCAVLADAEPWWPAGTRFGYHAQTFGFLLGEIVRRATG 169 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110558.875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110558.875.1 >prot_H-elongata_contig110558.875.1 ID=prot_H-elongata_contig110558.875.1|Name=mRNA_H-elongata_contig110558.875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp MLVDLSAGRQGPIDHRPVKPSTVFCVFSAGKAVCSTAVHILVDRGQLRYDback to top mRNA from alignment at H-elongata_contig110558:907..1918- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110558.875.1 ID=mRNA_H-elongata_contig110558.875.1|Name=mRNA_H-elongata_contig110558.875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1012bp|location=Sequence derived from alignment at H-elongata_contig110558:907..1918- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110558:907..1918- >mRNA_H-elongata_contig110558.875.1 ID=mRNA_H-elongata_contig110558.875.1|Name=mRNA_H-elongata_contig110558.875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig110558:907..1918- (Himanthalia elongata Himel1 dioecious)back to top |