mRNA_H-elongata_contig110554.873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110554.873.1
Unique NamemRNA_H-elongata_contig110554.873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110554.873.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.100e-39
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    1 GASRAGLAWDRGVSLVTVSAWQSMAALGTGFLMSRFWRRGRRSEPSALSDADRTRRNRYLMVFAAAHLAGVGLEYYGYGVIGPIAAEVLRSTETALFCLL 300
            GA+ AG  W +GVS+VTVSAWQ++AALG GFLMSRFWRR RR E  ALSDA+RTRRN++L+VFAAAHLAG GLEY+GYGVIG  AAEVLRSTE A FCLL
Sbjct:  368 GAAVAG--WGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAAFFCLL 465
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BLAST of mRNA_H-elongata_contig110554.873.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.580e-38
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   25 WDRGVSLVTVSAWQSMAALGTGFLMSRFWRRGRRSEPSALSDADRTRRNRYLMVFAAAHLAGVGLEYYGYGVIGPIAAEVLRSTETALFCLL 300
            W +GVS+VTVSAWQ++AALG GFLMSRFWRR RR E  ALSD +RTRRN++L+VFAAAHLAG GLEY+GYGVIG  AAEVLRSTE A FCLL
Sbjct:  344 WGKGVSVVTVSAWQTLAALGFGFLMSRFWRRFRRPEVRALSDGERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAACFCLL 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110554.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6G9_ECTSI2.100e-3976.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Z7_9PHAE2.580e-3877.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110554contigH-elongata_contig110554:628..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.6701841-CDS-H-elongata_contig110554:627..7861622929632.6701841-CDS-H-elongata_contig110554:627..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110554 628..786 +
1691679099.150598-CDS-H-elongata_contig110554:627..7861691679099.150598-CDS-H-elongata_contig110554:627..786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110554 628..786 +
1622929632.688481-CDS-H-elongata_contig110554:1331..14781622929632.688481-CDS-H-elongata_contig110554:1331..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110554 1332..1478 +
1691679099.1580899-CDS-H-elongata_contig110554:1331..14781691679099.1580899-CDS-H-elongata_contig110554:1331..1478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110554 1332..1478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110554.873.1prot_H-elongata_contig110554.873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110554 628..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110554.873.1

>prot_H-elongata_contig110554.873.1 ID=prot_H-elongata_contig110554.873.1|Name=mRNA_H-elongata_contig110554.873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
GASRAGLAWDRGVSLVTVSAWQSMAALGTGFLMSRFWRRGRRSEPSALSD
ADRTRRNRYLMVFAAAHLAGVGLEYYGYGVIGPIAAEVLRSTETALFCLL
R*
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mRNA from alignment at H-elongata_contig110554:628..1478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110554.873.1 ID=mRNA_H-elongata_contig110554.873.1|Name=mRNA_H-elongata_contig110554.873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=851bp|location=Sequence derived from alignment at H-elongata_contig110554:628..1478+ (Himanthalia elongata Himel1 dioecious)
GGAGCATCGAGGGCGGGCCTAGCTTGGGATCGAGGGGTTTCGCTAGTCAC
CGTTAGCGCGTGGCAAAGCATGGCGGCCCTCGGCACGGGGTTCTTGATGT
CGAGGTTTTGGAGGCGCGGTCGAAGATCGGAGCCAAGCGCGCTCAGCGAC
GCCGACCGGGTAGGTGGCGCTTCTTTGAGTGACTTCCGTGAGAGGCAGGG
GAAAATTTTGCGGGGTTCAGGGATTTTTTTTTAGAACGACCGCAATCAAT
GCAAGCAAAGAGAATAGTCCTACTGGGCACTGCTTTGTAAATTGATTGGC
GTATCGTCCGTCGCGTGTCCGTCCAGACGACGGGTGATTTATTTATCTAA
ATCGTTAGCAGTAAGCAGGTTACTGTTACTGTTAGTGTTAGTGTTAGTGT
TACTTTTGAACTACAGACTTGGTGCTAACTTATTTTTTTTTCAGACATCC
TAACAGCAAGCAGCGGCAAACGCAGGCGTTTCCAAACATGTCATTTGATC
GCGTGACATTACCCGGGATTGTTCGAAACCGTGGAGGGCGAGGCAGCAAG
GAATCATGTCAAGGCAAGCGTGGGTTTCTCGCGGTTCTAGGTAGCGTCCT
CGTGCTCAAGCTCGCGCTCCTAATCCCCCCCCCCCCCTCTCCCCACCTTA
CCTCCTCTATTATGTTCCTCCATGTGCTTTGATTCCGCGTGACGCCGCAC
AAAGACTCGACGAAACCGGTATCTCATGGTTTTCGCCGCGGCCCACCTAG
CGGGCGTCGGCTTGGAGTACTACGGGTACGGGGTTATTGGACCCATCGCG
GCCGAAGTGCTGCGATCAACCGAGACGGCCCTCTTCTGTCTTCTAAGGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig110554:628..1478+

>mRNA_H-elongata_contig110554.873.1 ID=mRNA_H-elongata_contig110554.873.1|Name=mRNA_H-elongata_contig110554.873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig110554:628..1478+ (Himanthalia elongata Himel1 dioecious)
GGAGCATCGAGGGCGGGCCTAGCTTGGGATCGAGGGGTTTCGCTAGTCAC
CGTTAGCGCGTGGCAAAGCATGGCGGCCCTCGGCACGGGGTTCTTGATGT
CGAGGTTTTGGAGGCGCGGTCGAAGATCGGAGCCAAGCGCGCTCAGCGAC
GCCGACCGGGGAGCATCGAGGGCGGGCCTAGCTTGGGATCGAGGGGTTTC
GCTAGTCACCGTTAGCGCGTGGCAAAGCATGGCGGCCCTCGGCACGGGGT
TCTTGATGTCGAGGTTTTGGAGGCGCGGTCGAAGATCGGAGCCAAGCGCG
CTCAGCGACGCCGACCGGACTCGACGAAACCGGTATCTCATGGTTTTCGC
CGCGGCCCACCTAGCGGGCGTCGGCTTGGAGTACTACGGGTACGGGGTTA
TTGGACCCATCGCGGCCGAAGTGCTGCGATCAACCGAGACGGCCCTCTTC
TGTCTTCTAAGGTGAACTCGACGAAACCGGTATCTCATGGTTTTCGCCGC
GGCCCACCTAGCGGGCGTCGGCTTGGAGTACTACGGGTACGGGGTTATTG
GACCCATCGCGGCCGAAGTGCTGCGATCAACCGAGACGGCCCTCTTCTGT
CTTCTAAGGTGA
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