mRNA_H-elongata_contig110481.866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110481.866.1
Unique NamemRNA_H-elongata_contig110481.866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: UPI001C155DC1 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C155DC1)

HSP 1 Score: 65.5 bits (158), Expect = 1.210e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            FPN+ KL++L   +P SSVECERGFS QN+IK+K R+ L+ + L+ LMRISL
Sbjct:   56 FPNIIKLIQLVYCIPFSSVECERGFSRQNQIKTKSRNSLTTDTLDRLMRISL 107
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: C3Z810_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z810_BRAFL)

HSP 1 Score: 68.2 bits (165), Expect = 1.930e-11
Identity = 30/64 (46.88%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   55 WQSVKALPGGAYFPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            W+ ++ + G   FPN+ KL  +  +LP  + +CERGFS QNRIK+++R+ LSV+RL++LMRI++
Sbjct:  302 WKELERVHGSELFPNLLKLATVGRLLPMHTADCERGFSTQNRIKTRLRNALSVKRLDILMRIAI 365
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 65.1 bits (157), Expect = 3.110e-11
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            FPN+ KL+++   +P SSVECERGFS QN+IK+K R+ L+   L++LMR+SL
Sbjct:   86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D)

HSP 1 Score: 60.1 bits (144), Expect = 1.280e-9
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            + N+ +LV + +VLP S+ +CERGFSAQNRIK+  RS L+V   E LMRISL
Sbjct:   37 YRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX)

HSP 1 Score: 62.8 bits (151), Expect = 1.470e-9
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRIS 243
            F N++ L ++ +VLP S+ +CERGFSAQNRIKSKVR+ L+V  +E L+RIS
Sbjct:  555 FQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: A0A8B6EWY7_MYTGA (Nuclear pore complex protein Nup188 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EWY7_MYTGA)

HSP 1 Score: 60.8 bits (146), Expect = 2.000e-9
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            FPN   L+++  +LP SSVECERGFS QN IK+K+R  L ++ L+ LMRISL
Sbjct:   99 FPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDALDQLMRISL 150
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 62.0 bits (149), Expect = 2.750e-9
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            FPN+ KL+++   +P SSVECERGFS QN+IK+K R+ L+   L++LM ISL
Sbjct:  544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 62.0 bits (149), Expect = 2.810e-9
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            FPN+ KL+++   +P SSVECERGFS QN+IK+K R+ L+   L++LM ISL
Sbjct:  614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: A0A2Z6RJ54_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ54_9GLOM)

HSP 1 Score: 61.2 bits (147), Expect = 2.900e-9
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   91 FPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            F N+ KL++L   +P SSVECERGFS QN+IK+K R+ L+ + L+ LMRISL
Sbjct:  171 FLNIIKLIQLIYCIPFSSVECERGFSRQNQIKTKNRNSLTTDTLDRLMRISL 222
[Close]
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Match: UPI0011C0E6B2 (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0E6B2)

HSP 1 Score: 61.2 bits (147), Expect = 4.990e-9
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   64 VKALPGGAYFPNVYKLVKLYIVLPHSSVECERGFSAQNRIKSKVRSRLSVERLELLMRISL 246
            V  LP G+ + N+  LV + +VLP SS  CERGFSAQ RIKS VR  L V+ +E L+RIS+
Sbjct:  335 VTKLPFGSDYKNIPHLVHIMLVLPISSAVCERGFSAQKRIKSDVRGSLHVDTVEDLIRISM 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110481.866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C155DC11.210e-1159.62Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
C3Z810_BRAFL1.930e-1146.88Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A8H3LT90_9GLOM3.110e-1155.77Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI0011C0D78D1.280e-957.69zinc finger protein 862-like n=1 Tax=Sparus aurata... [more]
A0A3B1J4P0_ASTMX1.470e-958.82TTF-type domain-containing protein n=1 Tax=Astyana... [more]
A0A8B6EWY7_MYTGA2.000e-957.69Nuclear pore complex protein Nup188 n=1 Tax=Mytilu... [more]
A0A015J8B3_RHIIW2.750e-955.77Uncharacterized protein n=13 Tax=Rhizophagus irreg... [more]
UPI001C19C3532.810e-955.77Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A2Z6RJ54_9GLOM2.900e-957.69Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI0011C0E6B24.990e-954.10zinc finger protein 862-like n=1 Tax=Sparus aurata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110481contigH-elongata_contig110481:809..1068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.8
Seed ortholog evalue2.9e-09
Seed eggNOG ortholog7739.XP_002595312.1
Preferred nameNUP188
KEGG koko:K14311
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0001667,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010631,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016032,GO:0016043,GO:0016477,GO:0017038,GO:0017056,GO:0031503,GO:0031967,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0040011,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0046907,GO:0048870,GO:0050657,GO:0050658,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0090130,GO:0090132,GO:0090521
EggNOG free text desc.Nucleoporin NUP188 homolog
EggNOG OGs38ETV@33154,3BES7@33208,3CZUR@33213,483SU@7711,KOG4833@1,KOG4833@2759
COG Functional cat.Q
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.954827-CDS-H-elongata_contig110481:808..10661622929631.954827-CDS-H-elongata_contig110481:808..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110481 809..1066 +
1691679098.8603933-CDS-H-elongata_contig110481:808..10661691679098.8603933-CDS-H-elongata_contig110481:808..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110481 809..1066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110481.866.1prot_H-elongata_contig110481.866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110481 809..1066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110481.866.1

>prot_H-elongata_contig110481.866.1 ID=prot_H-elongata_contig110481.866.1|Name=mRNA_H-elongata_contig110481.866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
EKVRKRRSEVSVRIRVHFWQSVKALPGGAYFPNVYKLVKLYIVLPHSSVE
CERGFSAQNRIKSKVRSRLSVERLELLMRISLAHRH
back to top

mRNA from alignment at H-elongata_contig110481:809..1068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110481.866.1 ID=mRNA_H-elongata_contig110481.866.1|Name=mRNA_H-elongata_contig110481.866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=260bp|location=Sequence derived from alignment at H-elongata_contig110481:809..1068+ (Himanthalia elongata Himel1 dioecious)
GAGAAGGTGCGCAAGCGCCGGAGTGAGGTATCCGTCAGGATAAGGGTGCA
CTTCTGGCAATCTGTCAAGGCTTTGCCAGGGGGGGCATACTTCCCCAACG
TGTACAAGCTCGTGAAGCTGTACATTGTGCTGCCTCACTCTTCCGTAGAA
TGCGAGCGCGGGTTTTCGGCGCAGAACCGCATTAAGTCGAAAGTGCGGAG
CCGCTTGTCAGTTGAGAGACTTGAGCTACTGATGCGCATTTCTTTGGCAC
ACAGGCACGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig110481:809..1068+

>mRNA_H-elongata_contig110481.866.1 ID=mRNA_H-elongata_contig110481.866.1|Name=mRNA_H-elongata_contig110481.866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig110481:809..1068+ (Himanthalia elongata Himel1 dioecious)
GAGAAGGTGCGCAAGCGCCGGAGTGAGGTATCCGTCAGGATAAGGGTGCA
CTTCTGGCAATCTGTCAAGGCTTTGCCAGGGGGGGCATACTTCCCCAACG
TGTACAAGCTCGTGAAGCTGTACATTGTGCTGCCTCACTCTTCCGTAGAA
TGCGAGCGCGGGTTTTCGGCGCAGAACCGCATTAAGTCGAAAGTGCGGAG
CCGCTTGTCAGTTGAGAGACTTGAGCTACTGATGCGCATTTCTTTGGCAC
ACAGGCACGAGAAGGTGCGCAAGCGCCGGAGTGAGGTATCCGTCAGGATA
AGGGTGCACTTCTGGCAATCTGTCAAGGCTTTGCCAGGGGGGGCATACTT
CCCCAACGTGTACAAGCTCGTGAAGCTGTACATTGTGCTGCCTCACTCTT
CCGTAGAATGCGAGCGCGGGTTTTCGGCGCAGAACCGCATTAAGTCGAAA
GTGCGGAGCCGCTTGTCAGTTGAGAGACTTGAGCTACTGATGCGCATTTC
TTTGGCACACAGGCAC
back to top