mRNA_H-elongata_contig110460.864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110460.864.1
Unique NamemRNA_H-elongata_contig110460.864.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: D7FY26_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY26_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.230e-55
Identity = 89/105 (84.76%), Postives = 100/105 (95.24%), Query Frame = 2
Query:    2 EKLTLSILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNEDGLTTLMYMQALYKHDWHNFMEREGI 316
            +K TLSILEKLHGL+GIDRN+AEP+SVEARRRLAFF NSLFMD+PRAPPV DMMSWSC+TPFYSEDV+YSR DL+Q+NEDGLTTLMY+QALYKHDW NFMER+GI
Sbjct: 1094 DKTTLSILEKLHGLLGIDRNDAEPHSVEARRRLAFFANSLFMDMPRAPPVQDMMSWSCMTPFYSEDVVYSRGDLDQKNEDGLTTLMYLQALYKHDWRNFMERKGI 1198          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 3.080e-55
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 2
Query:    2 EKLTLSILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNEDGLTTLMYMQALYKHDWHNFMEREGI 316
            +K TLSILEKLHGL+GIDRN+AEP+SVEARRRLAFF NSLFMD+PRAPPV DMMSWSC+TPFYSEDV+YSR DL+Q+NEDGLTTLMY+QALYKHDW NFMER GI
Sbjct: 1203 DKTTLSILEKLHGLLGIDRNDAEPHSVEARRRLAFFTNSLFMDMPRAPPVQDMMSWSCMTPFYSEDVVYSRGDLDQKNEDGLTTLMYLQALYKHDWRNFMERRGI 1307          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 164 bits (414), Expect = 9.970e-45
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = 2
Query:    8 LTLSILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNEDGLTTLMYMQALYKHDWHNFMEREGI 316
            LT SIL KL+GL+ I   +AEP S EARRRL FFVNSLFMD+PRAP + +M+SWSC+TP+YSEDV+Y R DLE+RNEDGL+ LMY+QALYKHDWHNF+ER GI
Sbjct:  970 LTKSILSKLYGLLAIQAGDAEPASPEARRRLTFFVNSLFMDMPRAPQLANMLSWSCVTPYYSEDVLYGRKDLEKRNEDGLSMLMYLQALYKHDWHNFLERNGI 1072          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 150 bits (378), Expect = 7.090e-40
Identity = 68/101 (67.33%), Postives = 86/101 (85.15%), Query Frame = 2
Query:   14 LSILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNEDGLTTLMYMQALYKHDWHNFMEREGI 316
            ++IL KL+GL+ +  NEAEP+S EA+RRL+FFVNSLFMD+P+APPV DM+SW+ +TPFYSEDVI +R DLE+RNEDGLT +MY+Q LY  DW NF+ER GI
Sbjct:  718 MAILRKLYGLLAVTPNEAEPHSPEAQRRLSFFVNSLFMDVPKAPPVADMLSWTVMTPFYSEDVILTRADLERRNEDGLTVMMYLQTLYASDWKNFLERLGI 818          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: W7U1M2_9STRA (1,3-beta-glucan synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1M2_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.560e-37
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 2
Query:   14 LSILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNEDGLTTLMYMQALYKHDWHNFMEREGI 316
            + +L KL GL+ +   +AEP S EARRRL+FFVNSLFMD+P+AP + DMMSW+ ITPFYSEDV+Y+R DLE  NEDG+ TL+Y+Q LYK DW NF ER G+
Sbjct: 1336 MPVLAKLQGLLTLHVGDAEPKSAEARRRLSFFVNSLFMDVPKAPSISDMMSWTVITPFYSEDVLYNRKDLEAANEDGVNTLLYLQTLYKSDWKNFQERLGL 1436          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: A0A7S3LFK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LFK8_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.680e-36
Identity = 60/101 (59.41%), Postives = 81/101 (80.20%), Query Frame = 2
Query:   17 SILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNED-GLTTLMYMQALYKHDWHNFMEREGI 316
            ++L+K+HGL+ +  +E EP S E RRRL FFVNSLFMD+P AP + DM SW+ +TP+YSEDV YS+ DLE+R++  G++TL+Y+Q LYK DWHNF+ER GI
Sbjct:  109 AVLKKIHGLMCMHPDEVEPKSKEVRRRLTFFVNSLFMDMPDAPSIHDMFSWNVLTPYYSEDVTYSKADLERRSDALGVSTLLYLQTLYKPDWHNFLERLGI 209          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: B7FQP6_PHATC (1,3-beta-glucan synthase n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQP6_PHATC)

HSP 1 Score: 134 bits (337), Expect = 2.410e-34
Identity = 60/101 (59.41%), Postives = 83/101 (82.18%), Query Frame = 2
Query:   17 SILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNED-GLTTLMYMQALYKHDWHNFMEREGI 316
            ++L+K+HGLV +  ++AEP S E RRRL FFVNSLFMD+P AP + DM SW+ +TP+YSEDV YS+DDLE+R++  G++TL+Y+Q LY+ DW+NF+ER GI
Sbjct: 1148 AVLKKMHGLVCMHPDDAEPKSKEVRRRLTFFVNSLFMDMPNAPSIHDMFSWNVLTPYYSEDVTYSKDDLEKRSDALGVSTLLYLQTLYRSDWNNFLERLGI 1248          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: A0A812UTS8_SYMMI (CALS5 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UTS8_SYMMI)

HSP 1 Score: 131 bits (330), Expect = 2.040e-33
Identity = 59/101 (58.42%), Postives = 78/101 (77.23%), Query Frame = 2
Query:   14 LSILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNEDGLTTLMYMQALYKHDWHNFMEREGI 316
            L +L K++GL  + + + EP+S EARRRL FFVNSLFM +P  P + D   +SC+TPFYSEDV+ +RDDLEQ+N DG+ TL+Y+Q LYK DWHNF+ER G+
Sbjct:   26 LPVLNKINGLFKLRQVQVEPSSSEARRRLHFFVNSLFMMMPSIPSMVDCKEYSCLTPFYSEDVLLTRDDLEQKNSDGVGTLLYLQTLYKKDWHNFLERRGL 126          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: A0A1Z5JIZ9_FISSO (1,3-beta-glucan synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIZ9_FISSO)

HSP 1 Score: 131 bits (330), Expect = 2.120e-33
Identity = 60/100 (60.00%), Postives = 82/100 (82.00%), Query Frame = 2
Query:   20 ILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNED-GLTTLMYMQALYKHDWHNFMEREGI 316
            +L+KL+GLV +  ++AEP S EARRRL FFVNSLFMD+P AP + DM SW+ +TPFYSEDV+YS+ DLE+R +  G++TL+Y+Q LY+ DW+NF+ER G+
Sbjct: 1167 VLKKLYGLVCMHPDDAEPKSKEARRRLTFFVNSLFMDMPDAPSIHDMFSWNVLTPFYSEDVLYSKADLERRTDALGVSTLLYLQTLYRSDWNNFLERLGV 1266          
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Match: A0A7S1UZ62_9STRA (1,3-beta-glucan synthase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ62_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.350e-33
Identity = 55/100 (55.00%), Postives = 81/100 (81.00%), Query Frame = 2
Query:   20 ILEKLHGLVGIDRNEAEPNSVEARRRLAFFVNSLFMDLPRAPPVGDMMSWSCITPFYSEDVIYSRDDLEQRNED-GLTTLMYMQALYKHDWHNFMEREGI 316
            +L+K+HGL+ +  ++ EP S++ RRRL FFVNSLFMD+P AP + DM SW+ +TP+YSEDV Y++DDL +R++  G++TL+Y+Q LY+ DW+NF+ER GI
Sbjct: 1162 VLKKIHGLIALHPDDVEPKSIDVRRRLTFFVNSLFMDMPNAPSIHDMFSWNVLTPYYSEDVTYTKDDLMKRSDALGVSTLLYLQTLYRADWNNFVERMGI 1261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110460.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY26_ECTSI2.230e-5584.761,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JFR3_9PHAE3.080e-5584.761,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z4B5_9STRA9.970e-4571.841,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2UV62_9STRA7.090e-4067.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U1M2_9STRA3.560e-3763.371,3-beta-glucan synthase n=2 Tax=Monodopsidaceae T... [more]
A0A7S3LFK8_9STRA3.680e-3659.41Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
B7FQP6_PHATC2.410e-3459.411,3-beta-glucan synthase n=4 Tax=Phaeodactylum tri... [more]
A0A812UTS8_SYMMI2.040e-3358.42CALS5 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A1Z5JIZ9_FISSO2.120e-3360.001,3-beta-glucan synthase n=1 Tax=Fistulifera solar... [more]
A0A7S1UZ62_9STRA7.350e-3355.001,3-beta-glucan synthase n=2 Tax=Grammatophora oce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110460contigH-elongata_contig110460:1000..2082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.7333446-CDS-H-elongata_contig110460:999..12671622929631.7333446-CDS-H-elongata_contig110460:999..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110460 1000..1267 +
1691679098.8045335-CDS-H-elongata_contig110460:999..12671691679098.8045335-CDS-H-elongata_contig110460:999..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110460 1000..1267 +
1622929631.760674-CDS-H-elongata_contig110460:2032..20821622929631.760674-CDS-H-elongata_contig110460:2032..2082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110460 2033..2082 +
1691679098.8137197-CDS-H-elongata_contig110460:2032..20821691679098.8137197-CDS-H-elongata_contig110460:2032..2082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110460 2033..2082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110460.864.1prot_H-elongata_contig110460.864.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110460 1000..2082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110460.864.1

>prot_H-elongata_contig110460.864.1 ID=prot_H-elongata_contig110460.864.1|Name=mRNA_H-elongata_contig110460.864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GEADSLHTREAARTGRHRPQRGGAELGRSPPTPRVLRELPVHGPAPRPPR
RGHDELVVHYPLLLRGRNLQQGRPGAKERGWVDHAHVHAGVVQARLAQLY
GARGN*
back to top

mRNA from alignment at H-elongata_contig110460:1000..2082+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110460.864.1 ID=mRNA_H-elongata_contig110460.864.1|Name=mRNA_H-elongata_contig110460.864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-elongata_contig110460:1000..2082+ (Himanthalia elongata Himel1 dioecious)
GGAGAAGCTGACTCTCTCCATACTCGAGAAGCTGCACGGACTGGTCGGCA TCGACCGCAACGAGGCGGAGCCGAACTCGGTAGAAGCCCGCCGACGCCTC GCGTTCTTCGTGAACTCCCTGTTCATGGACCTGCCCCGCGCCCCCCCCGT CGGGGACATGATGAGCTGGTCGTGCATTACCCCCTTTTACTCAGAGGACG TAATCTACAGCAGGGACGACCTGGAGCAAAGGAACGAGGATGGGTTGACC ACGCTCATGTACATGCAGGTAAACGGGACAAGGAGACTTCCATTAATCAT TATCATTAAATGCTAAGAAATTTTGCACCGAGGTATCGTTTGGTAGACAC GCCGTGGTGGTACGCGTTTTTTTTTACACTTTTGTACCTGATTTTGAAGT ACGGCGCCATGATTTTGATATGTTGTCGAAGCTGACTTTTTTTGTTGCTC ATACACCGAAGTGCGTTTGCGTGACTCTGTGTGGTACAAGTTCAACAAAT CTTTTTCTGTTTTTTTATATTCTAAATGTATAATAAAACTTGAAATCCAC TTCCAAAGAGGTTAAAGAAATGCATCTTGGGTTGGTACGGGCTGTACAAT GGTGTGGTGTTTTGCTGTACGATGATGTGGTATTTTGCTCCTCTCAAGCA AACCAAAATAGTTTCATTTCACAATCGTGCATGTTGATCTGCGACGCCCC GCGATCGCGAGGAACATTGGTACGGGGCTAGCTAGCTGTGCTCTAGCGTT GCTCCTGGGGAATTCCTCTCCGCAAAGTCGAATACTCGATGGACTTGATT AAAGCGATTCTTTTCTTTTTTACCAATTTGCATTAGACGGCGCAAACCGG CAAGACAAGTAATAAGGGGGCACCACGCCGGTTTGCGAATACTCCCCCCC CTCTTATGGGGGGCTATCCCCGGAGACGTTGGATTGGCTTGTTGACAATT CCAAGAAGTTTCGCACCTCTCCCCATCCCCCCCTCCTAATCCATCGCGAA CGCCCCCTCGCCCTCGCCTGACTACTATAATAGGCGTTGTACAAGCACGA CTGGCACAACTTTATGGAGCGCGAGGGAATTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig110460:1000..2082+

>mRNA_H-elongata_contig110460.864.1 ID=mRNA_H-elongata_contig110460.864.1|Name=mRNA_H-elongata_contig110460.864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig110460:1000..2082+ (Himanthalia elongata Himel1 dioecious)
GGAGAAGCTGACTCTCTCCATACTCGAGAAGCTGCACGGACTGGTCGGCA
TCGACCGCAACGAGGCGGAGCCGAACTCGGTAGAAGCCCGCCGACGCCTC
GCGTTCTTCGTGAACTCCCTGTTCATGGACCTGCCCCGCGCCCCCCCCGT
CGGGGACATGATGAGCTGGTCGTGCATTACCCCCTTTTACTCAGAGGACG
TAATCTACAGCAGGGACGACCTGGAGCAAAGGAACGAGGATGGGTTGACC
ACGCTCATGTACATGCAGGGAGAAGCTGACTCTCTCCATACTCGAGAAGC
TGCACGGACTGGTCGGCATCGACCGCAACGAGGCGGAGCCGAACTCGGTA
GAAGCCCGCCGACGCCTCGCGTTCTTCGTGAACTCCCTGTTCATGGACCT
GCCCCGCGCCCCCCCCGTCGGGGACATGATGAGCTGGTCGTGCATTACCC
CCTTTTACTCAGAGGACGTAATCTACAGCAGGGACGACCTGGAGCAAAGG
AACGAGGATGGGTTGACCACGCTCATGTACATGCAGGCGTTGTACAAGCA
CGACTGGCACAACTTTATGGAGCGCGAGGGAATTAGGCGTTGTACAAGCA
CGACTGGCACAACTTTATGGAGCGCGAGGGAATTAG
back to top