mRNA_H-elongata_contig110407.858.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110407.858.1
Unique NamemRNA_H-elongata_contig110407.858.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110407.858.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.790e-5
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 CTDDCSACGGSGCGS-----FGTTCCTSDI---GDACSATGEAPCYIDGDSSSPTPS-TTPT 159
            C  DC  CGGSGC S      G  CCT +I   G  CSATG APC++DGDS   TPS +TPT
Sbjct:   35 CVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGDS---TPSKSTPT 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110407.858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRN0_ECTSI2.790e-554.84Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110407contigH-elongata_contig110407:661..2029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size248
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110407.858.1prot_H-elongata_contig110407.858.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110407 663..2029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.8992093-CDS-H-elongata_contig110407:662..7481622929630.8992093-CDS-H-elongata_contig110407:662..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110407 663..748 -
1691679098.4889443-CDS-H-elongata_contig110407:662..7481691679098.4889443-CDS-H-elongata_contig110407:662..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110407 663..748 -
1622929630.9156423-CDS-H-elongata_contig110407:1142..11781622929630.9156423-CDS-H-elongata_contig110407:1142..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110407 1143..1178 -
1691679098.506777-CDS-H-elongata_contig110407:1142..11781691679098.506777-CDS-H-elongata_contig110407:1142..1178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110407 1143..1178 -
1622929630.9325979-CDS-H-elongata_contig110407:1905..20291622929630.9325979-CDS-H-elongata_contig110407:1905..2029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110407 1906..2029 -
1691679098.514083-CDS-H-elongata_contig110407:1905..20291691679098.514083-CDS-H-elongata_contig110407:1905..2029Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110407 1906..2029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110407.858.1

>prot_H-elongata_contig110407.858.1 ID=prot_H-elongata_contig110407.858.1|Name=mRNA_H-elongata_contig110407.858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
CTDDCSACGGSGCGSFGTTCCTSDIGDACSATGEAPCYIDGDSSSPTPST
TPTGSTCSNGLDGVESSNGKYCCTDDCSACGG
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mRNA from alignment at H-elongata_contig110407:661..2029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110407.858.1 ID=mRNA_H-elongata_contig110407.858.1|Name=mRNA_H-elongata_contig110407.858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1369bp|location=Sequence derived from alignment at H-elongata_contig110407:661..2029- (Himanthalia elongata Himel1 dioecious)
TGCACGGACGACTGTTCAGCCTGTGGCGGCTCTGGCTGTGGCAGCTTTGG
GACCACGTGCTGCACCAGTGATATCGGAGATGCATGCAGTGCAACGGGAG
AGGCACCCTGCTATATCGACGGCGGTATGTCACGAACCAATCTTGCGACA
GTCGAAGCTCTATTTCTTATTATCTTATTATCCAATCATCATCCAGCACG
CCTCCGATACTGTACTGTATACTGTCTTGTGACTGTATCGCATGTGTTCA
CTGTACCAATAGTGGGTGGGAAAAGAGAGGCGCACAATAATTGGTCCATG
GGGGTACCTGAATAGGCTGCATCCGTTACTCGAGCCCAGTGCCGGCGGAC
GCAATTAATTGCGTGGCCTGATGAAATCGGGATTGGTCCGATGGCGGTTG
ACGGCAAATATGGACGCCATCGCGGAAAATGAAAGGATCAAGGATCCCAA
AAGTACGCATGAGATTCAGTCTGTGCTAAGAGAATGAGCAGGCTGACGCG
GGACTGGACTGACTACCGAACGCGTCTCGCGAGAACAATTTCTCAGGCGC
GAACGGGGACAGGGTAAAATTATTTTTCCCTTTTTTAATCAATTTGCATT
ACATTATGGGGAACTACCCCAAGACTACCCCTGAAGTTCCCTGTTCAGCT
GGCAATAAGCAGGAGATAACCAAATCCGGTTGATCTTACTCTATTATATG
TCATGACCACATATCATCGGTCCCTCTCATCTTGAAAAAAACGGACGGAT
TTACATTATTATCGTGAAACATCATCTTATTTGCTCCCTGATTTGCCTCC
TCCCGTCTCCAACAATGAACTATGGGACATTGGTGCCCGCATCGATCGCA
GATTCTTCCAGTCCGACACCATCGACTACCCCCACAGGTGAGTTGAATTT
CCGACCAATCGATATAGCTCTGAAGTCACAGTTGTTCAACGTTTGACATA
AATCCTGAAATAACTCGTCGATCATGTTTGTTTGTGCCGACCTCCGTGTC
GCCTTTTCTTGTGTTCCTCGACTAAAAAATGGCAAAAAAACTCTATCAAA
CGACACAATACACAGACGTTTGGCATCATCAGAAGAGGACGAACCGCCTA
AACTTGAAACAAGTAATAAATAACAAATTACAAAGTCTTTATAAATAACA
AACAACAGGACGTTTGGCATCAGAAGAGTAAGATTCCTCATGAAAGAGGA
AAATAAAGTATAGGGCCAAGAGAGATTATATTATTTCTAAGTCACTTGCA
TCGTGTGTTTTTTTAGTTGATATAATGACAGGATCTACCTGCAGCAACGG
TCTTGATGGCGTCGAGTCTAGTAACGGTAAGTACTGCTGCACGGACGACT
GTTCAGCCTGTGGCGGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig110407:661..2029-

>mRNA_H-elongata_contig110407.858.1 ID=mRNA_H-elongata_contig110407.858.1|Name=mRNA_H-elongata_contig110407.858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig110407:661..2029- (Himanthalia elongata Himel1 dioecious)
TGCACGGACGACTGTTCAGCCTGTGGCGGCTCTGGCTGTGGCAGCTTTGG
GACCACGTGCTGCACCAGTGATATCGGAGATGCATGCAGTGCAACGGGAG
AGGCACCCTGCTATATCGACGGCGTGCACGGACGACTGTTCAGCCTGTGG
CGGCTCTGGCTGTGGCAGCTTTGGGACCACGTGCTGCACCAGTGATATCG
GAGATGCATGCAGTGCAACGGGAGAGGCACCCTGCTATATCGACGGCGAT
TCTTCCAGTCCGACACCATCGACTACCCCCACAGATTCTTCCAGTCCGAC
ACCATCGACTACCCCCACAGGATCTACCTGCAGCAACGGTCTTGATGGCG
TCGAGTCTAGTAACGGTAAGTACTGCTGCACGGACGACTGTTCAGCCTGT
GGCGGCGATCTACCTGCAGCAACGGTCTTGATGGCGTCGAGTCTAGTAAC
GGTAAGTACTGCTGCACGGACGACTGTTCAGCCTGTGGCGGC
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