mRNA_H-elongata_contig110371.856.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110371.856.1
Unique NamemRNA_H-elongata_contig110371.856.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110371.856.1 vs. uniprot
Match: A0A835YVQ8_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVQ8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.810e-6
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   37 SNVCCHEDC--GECGGSGCKTRPGGKYSCCTQRIMEANVACDEAGSAPCVLIP 189
            + VCC +D   G CGGS CKT PGG Y CC   ++  N++C   G APC++ P
Sbjct:  521 NQVCCPKDTCGGVCGGSTCKTLPGGYYECCLNGVLATNLSCANTG-APCIIPP 572
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BLAST of mRNA_H-elongata_contig110371.856.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 9.600e-6
Identity = 26/58 (44.83%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:   16 FGGISDESNVCCHEDCGECGGSGCKTRPGG--KYSCCTQRIMEANVACDEAGSAPCVL 183
            F G+  E N+CCH DCG CGGS C+ R  G     CC   I +    C E  SAPC++
Sbjct:   16 FVGVQSE-NICCHVDCGTCGGSECRRRGKGLGAADCCRNYISKNGALCSENLSAPCIM 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110371.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YVQ8_9STRA2.810e-647.17GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
D8LRM4_ECTSI9.600e-644.83Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110371contigH-elongata_contig110371:881..1093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D7FHN6
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003990.1
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.738678-CDS-H-elongata_contig110371:880..10931622929630.738678-CDS-H-elongata_contig110371:880..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110371 881..1093 -
1691679098.4500031-CDS-H-elongata_contig110371:880..10931691679098.4500031-CDS-H-elongata_contig110371:880..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110371 881..1093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110371.856.1prot_H-elongata_contig110371.856.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110371 881..1093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110371.856.1

>prot_H-elongata_contig110371.856.1 ID=prot_H-elongata_contig110371.856.1|Name=mRNA_H-elongata_contig110371.856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MTCSDFGGISDESNVCCHEDCGECGGSGCKTRPGGKYSCCTQRIMEANVA
CDEAGSAPCVLIPMSPTPVTE
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mRNA from alignment at H-elongata_contig110371:881..1093-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110371.856.1 ID=mRNA_H-elongata_contig110371.856.1|Name=mRNA_H-elongata_contig110371.856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig110371:881..1093- (Himanthalia elongata Himel1 dioecious)
ATGACGTGTAGCGACTTCGGAGGAATCTCCGACGAATCAAATGTATGCTG
CCACGAAGATTGTGGAGAGTGCGGAGGCAGTGGGTGCAAAACCCGTCCAG
GAGGAAAGTACAGTTGTTGCACACAGCGCATCATGGAGGCAAACGTAGCT
TGCGACGAGGCCGGCTCGGCCCCCTGCGTGCTCATACCGATGTCCCCGAC
CCCCGTGACCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig110371:881..1093-

>mRNA_H-elongata_contig110371.856.1 ID=mRNA_H-elongata_contig110371.856.1|Name=mRNA_H-elongata_contig110371.856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig110371:881..1093- (Himanthalia elongata Himel1 dioecious)
ATGACGTGTAGCGACTTCGGAGGAATCTCCGACGAATCAAATGTATGCTG
CCACGAAGATTGTGGAGAGTGCGGAGGCAGTGGGTGCAAAACCCGTCCAG
GAGGAAAGTACAGTTGTTGCACACAGCGCATCATGGAGGCAAACGTAGCT
TGCGACGAGGCCGGCTCGGCCCCCTGCGTGCTCATACCGATGTCCCCGAC
CCCCGTGACCGAGATGACGTGTAGCGACTTCGGAGGAATCTCCGACGAAT
CAAATGTATGCTGCCACGAAGATTGTGGAGAGTGCGGAGGCAGTGGGTGC
AAAACCCGTCCAGGAGGAAAGTACAGTTGTTGCACACAGCGCATCATGGA
GGCAAACGTAGCTTGCGACGAGGCCGGCTCGGCCCCCTGCGTGCTCATAC
CGATGTCCCCGACCCCCGTGACCGAG
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