mRNA_H-elongata_contig110348.853.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110348.853.1
Unique NamemRNA_H-elongata_contig110348.853.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A6H5LAW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAW2_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 3.880e-52
Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 RQVDLNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGFVSPLDVSPDGQ--EPGEFRDSEEA 300
            +QVDLNLDFEEL+DV YL NGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRL HPNIV+MLGAGFV+PLDV PDG   E GEFRD ++A
Sbjct:   34 QQVDLNLDFEELRDVQYLTNGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLQHPNIVEMLGAGFVNPLDVGPDGGGGERGEFRDLDQA 135          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A835ZE86_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE86_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.070e-18
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   25 FEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGF 234
            +E+LK++ Y+  G MC IY+AE+RG +VVVK+PRDDC  PE+A  DLE E+++L  LDH +I+ +LGAG 
Sbjct:  137 WEDLKNLFYMTEGAMCRIYSAEYRGAKVVVKLPRDDCEDPEIAEHDLEVELEVLWGLDHRHIIKLLGAGL 206          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A6V1S4W8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S4W8_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 2.890e-16
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 RQVDLNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGF 234
            ++VD +L +  L D  +LANGG C+IYTA+++   VVVKM +DD    E AR DLE E+  L RL HPN+V++ GAGF
Sbjct:  216 KEVDTDLSWALLDDARFLANGGFCTIYTAQFKHLPVVVKMLKDDRLDMEAARADLEAEMHFLLRLRHPNVVEIYGAGF 293          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: K0R303_THAOC (Protein kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R303_THAOC)

HSP 1 Score: 73.9 bits (180), Expect = 3.760e-13
Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 VDLNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGF 234
              LNL ++ L++V YL +GG   I+TA ++G+ VVVK  + +C    +A K++E+E++I  RLDHPNI  ++GAGF
Sbjct:  438 AQLNLQWDSLRNVEYLTDGGNAWIHTAVFQGKSVVVKTIKPECQDVALAIKEIESELEIHSRLDHPNICKLVGAGF 513          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A7S3XVQ2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVQ2_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 5.960e-13
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   16 NLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAG 231
            N++++ L++V +LA GGMC + +A   G   V+K+ RDD A PEV +  L+ EI +L+RL HPN+V   G+G
Sbjct:   83 NMEWDRLENVEFLAQGGMCRVLSATLHGVPCVIKIGRDDHANPEVVKLSLKDEITVLRRLKHPNVVGYYGSG 154          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A1Z5KHW2_FISSO (Protein kinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHW2_FISSO)

HSP 1 Score: 72.4 bits (176), Expect = 1.260e-12
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    7 VDLNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAG 231
             +LNL + +L++V YL +GG   I+TA +R + VVVK  + +C    VA  ++E E+DI  RL HPNIVD+LGAG
Sbjct:  357 AELNLQWRQLQNVEYLTDGGNSWIHTAVFRDKPVVVKTLKPECQDVVVAINEMEGELDIHSRLQHPNIVDLLGAG 431          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A7S2LY51_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY51_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 VDLNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGF 234
              LNL +E L++V YL +GG   I+TA  +G+ VVVK  + +C    +A  ++E E++I  RLDHPNIV ++GAGF
Sbjct:  480 AQLNLQWESLRNVEYLTDGGNNWIHTAVLQGKSVVVKTLKPECQDVALAINEIEGELEIHSRLDHPNIVKLIGAGF 555          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A7S3DX07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DX07_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.370e-10
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   13 LNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGFVS 240
            L+L + +L++V YL +GG   I+TA ++GR VVVK  + +C    +A  ++E E+++  +L+HPNIV ++GAG  S
Sbjct:  408 LDLQWRQLQNVEYLTDGGNSWIHTAVFQGRPVVVKTLKPECQDVALAINEIEAELEVHSKLNHPNIVGLIGAGTTS 483          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A7S4EJ08_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EJ08_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.610e-10
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   13 LNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGFVS 240
            L+L + +L +V YL +GG   I+TA + G+ VVVK  R +C    +A  ++E E+ +  RL+HPN+V ++GAG+ S
Sbjct:  502 LDLQWCQLHNVEYLTDGGTSWIHTAIFDGKPVVVKTLRPECQDTSIAINEIEAEVGVHSRLNHPNVVTLIGAGWTS 577          
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Match: A0A7S2EVB1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVB1_TRICV)

HSP 1 Score: 63.5 bits (153), Expect = 2.650e-10
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   13 LNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEVARKDLETEIDILQRLDHPNIVDMLGAGFVS 240
            L+L +  L++V YL +GG   I+TA   GR VVVK  + +C    +A  ++E E++I  +LDHPNIV ++GAG  S
Sbjct:   29 LDLRWNALRNVEYLTDGGNNWIHTAVMDGRPVVVKTLKPECQDLALAINEIEGELEIHSKLDHPNIVTLMGAGTTS 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110348.853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAW2_9PHAE3.880e-5285.29Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZE86_9STRA1.070e-1854.29Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6V1S4W8_HETAK2.890e-1651.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0R303_THAOC3.760e-1344.74Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S3XVQ2_HETAK5.960e-1344.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1Z5KHW2_FISSO1.260e-1248.00Protein kinase domain-containing protein n=1 Tax=F... [more]
A0A7S2LY51_9STRA1.790e-1246.05Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3DX07_9STRA1.370e-1040.79Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4EJ08_9STRA2.610e-1040.79Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2EVB1_TRICV2.650e-1043.42Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110348contigH-elongata_contig110348:83..980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue8.3e-43
Seed eggNOG ortholog2880.D7FUV9
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionSerine/threonine-protein kinase CTR1
Ec32 orthologEc-26_004390.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.3613162-CDS-H-elongata_contig110348:82..2831622929630.3613162-CDS-H-elongata_contig110348:82..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110348 83..283 -
1691679098.2876382-CDS-H-elongata_contig110348:82..2831691679098.2876382-CDS-H-elongata_contig110348:82..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110348 83..283 -
1622929630.380041-CDS-H-elongata_contig110348:863..9801622929630.380041-CDS-H-elongata_contig110348:863..980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110348 864..980 -
1691679098.2986758-CDS-H-elongata_contig110348:863..9801691679098.2986758-CDS-H-elongata_contig110348:863..980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110348 864..980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110348.853.1prot_H-elongata_contig110348.853.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110348 83..980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110348.853.1

>prot_H-elongata_contig110348.853.1 ID=prot_H-elongata_contig110348.853.1|Name=mRNA_H-elongata_contig110348.853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
RQVDLNLDFEELKDVHYLANGGMCSIYTAEWRGRRVVVKMPRDDCAQPEV
ARKDLETEIDILQRLDHPNIVDMLGAGFVSPLDVSPDGQEPGEFRDSEEA
RFSYLL
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mRNA from alignment at H-elongata_contig110348:83..980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110348.853.1 ID=mRNA_H-elongata_contig110348.853.1|Name=mRNA_H-elongata_contig110348.853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=898bp|location=Sequence derived from alignment at H-elongata_contig110348:83..980- (Himanthalia elongata Himel1 dioecious)
CGGCAGGTGGATCTCAATCTGGATTTCGAGGAGCTGAAGGACGTACACTA CCTCGCCAATGGAGGCATGTGTTCCATCTACACAGCGGAGTGGCGAGGCC GTCGCGTTGTTGTCAAGGTGTGTGGCAGGAGAAATCGAATGTTCCCCTCC TTCAACCTCCTCCCCCCCCCTTCCCTGCCCCTGCCGTTCTCTCTAGCAAA CCCGCCTCTTTATTGTGTCGTGTATTGGTCATTCAGAACAACAGTGGTGA TAGAAATTTTATACAAAAAAATATATGAACTTAGCACCGTGTGAGAGGGT GTAGTCCAGGGAGGGGGACCAACTATTGTGAGGTTTGAATGTGTATAATA ATACCTTTGAGAGCAAAAAAACTTCGCATCATTTATGTGATTATATTATT TTATATATTAGTAATGCTAAGATATGTTGCAAGATCTGTTCTCGAGCTAT GGCTGGCGGCGCGTCCCTAGGGAGTAGATCGATATTATATTGTCCATAGT TGGATTTCCACGTGGACCACCGTGCGGAAAAATTGGGTTCTATGTTTCGT GTCCCCTCCTCTTTCCCTCCTGTCCCATTGACACCCCTCTTCCCGCCCAC GCCTACGCCTACGCCCTCGCCTCTAACTCCTTTATCCCGCGTGGCGTCCG CTCTCCTTCTCCTCCTTACGTGGGGTGTCGACGGCGGCGGTTGGCAGATG CCTCGAGACGATTGCGCGCAGCCGGAGGTGGCACGCAAGGACCTCGAGAC GGAGATCGATATCCTGCAGCGCTTAGACCACCCCAACATCGTGGATATGC TCGGGGCGGGGTTCGTGAGCCCGCTGGACGTTAGCCCCGACGGACAGGAG CCGGGAGAGTTCCGCGACTCGGAAGAGGCAAGGTTTTCTTATCTTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig110348:83..980-

>mRNA_H-elongata_contig110348.853.1 ID=mRNA_H-elongata_contig110348.853.1|Name=mRNA_H-elongata_contig110348.853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig110348:83..980- (Himanthalia elongata Himel1 dioecious)
CGGCAGGTGGATCTCAATCTGGATTTCGAGGAGCTGAAGGACGTACACTA
CCTCGCCAATGGAGGCATGTGTTCCATCTACACAGCGGAGTGGCGAGGCC
GTCGCGTTGTTGTCAAGCGGCAGGTGGATCTCAATCTGGATTTCGAGGAG
CTGAAGGACGTACACTACCTCGCCAATGGAGGCATGTGTTCCATCTACAC
AGCGGAGTGGCGAGGCCGTCGCGTTGTTGTCAAGATGCCTCGAGACGATT
GCGCGCAGCCGGAGGTGGCACGCAAGGACCTCGAGACGGAGATCGATATC
CTGCAGCGCTTAGACCACCCCAACATCGTGGATATGCTCGGGGCGGGGTT
CGTGAGCCCGCTGGACGTTAGCCCCGACGGACAGGAGCCGGGAGAGTTCC
GCGACTCGGAAGAGGCAAGGTTTTCTTATCTTCTCATGCCTCGAGACGAT
TGCGCGCAGCCGGAGGTGGCACGCAAGGACCTCGAGACGGAGATCGATAT
CCTGCAGCGCTTAGACCACCCCAACATCGTGGATATGCTCGGGGCGGGGT
TCGTGAGCCCGCTGGACGTTAGCCCCGACGGACAGGAGCCGGGAGAGTTC
CGCGACTCGGAAGAGGCAAGGTTTTCTTATCTTCTC
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