mRNA_H-elongata_contig11029.844.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11029.844.1
Unique NamemRNA_H-elongata_contig11029.844.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11029.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11029contigH-elongata_contig11029:8438..9006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.368171-CDS-H-elongata_contig11029:8437..85391622929629.368171-CDS-H-elongata_contig11029:8437..8539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11029 8438..8539 +
1691679097.8324306-CDS-H-elongata_contig11029:8437..85391691679097.8324306-CDS-H-elongata_contig11029:8437..8539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11029 8438..8539 +
1622929629.384039-CDS-H-elongata_contig11029:8876..90051622929629.384039-CDS-H-elongata_contig11029:8876..9005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11029 8877..9005 +
1691679097.8432386-CDS-H-elongata_contig11029:8876..90051691679097.8432386-CDS-H-elongata_contig11029:8876..9005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11029 8877..9005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11029.844.1prot_H-elongata_contig11029.844.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11029 8438..9005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11029.844.1

>prot_H-elongata_contig11029.844.1 ID=prot_H-elongata_contig11029.844.1|Name=mRNA_H-elongata_contig11029.844.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
AATVLHVYSAFLPSAVDKFGVDVLEAKGVTWPAQITPTSVEPRVDVEAEV
VTWVPDDIASLVWVSLVLALAVLLLLQ
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mRNA from alignment at H-elongata_contig11029:8438..9006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11029.844.1 ID=mRNA_H-elongata_contig11029.844.1|Name=mRNA_H-elongata_contig11029.844.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=569bp|location=Sequence derived from alignment at H-elongata_contig11029:8438..9006+ (Himanthalia elongata Himel1 dioecious)
GCGGCGACGGTGCTGCATGTATACTCCGCATTTCTGCCTTCTGCCGTCGA
CAAGTTTGGGGTCGACGTCCTGGAAGCTAAGGGTGTGACGTGGCCGGCTC
AGGTATTATTTATGTTTTGGGGTTTCCTCTCCTGTCCCGTCGAGTTCCCG
CGGGTAGCAGCAGGCCGTGGCTCTCAAAAAACAGCCTTCGAACTTAACTA
GTTTTGGAAGCTGGCCTCCGCGCGTTCGTGCCAAATTGTGTTGTCCGCCC
CCGACTGGAGATCGCCTTTCTATTACAGCGGCATGTGTTCTTTTGCTCTA
TGCATCCGTCCAAGCTGCGCTTCTCTCTCCGCATTTTGTTGGTTACCTGC
ACGCACTCTTTCGTGTGTAGAAAGTTACTCACTATGGAGTTATACCTCTC
CCCCCTCCCCTCCACCCTTTGTCGCTGTGGCGGAAGTAGATTACGCCGAC
AAGCGTCGAACCCCGAGTCGACGTCGAAGCGGAAGTTGTTACCTGGGTAC
CGGATGATATCGCGAGCCTTGTCTGGGTGAGCTTGGTTTTGGCGCTGGCC
GTTTTACTTCTCTTGCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig11029:8438..9006+

>mRNA_H-elongata_contig11029.844.1 ID=mRNA_H-elongata_contig11029.844.1|Name=mRNA_H-elongata_contig11029.844.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig11029:8438..9006+ (Himanthalia elongata Himel1 dioecious)
GCGGCGACGGTGCTGCATGTATACTCCGCATTTCTGCCTTCTGCCGTCGA
CAAGTTTGGGGTCGACGTCCTGGAAGCTAAGGGTGTGACGTGGCCGGCTC
AGGCGGCGACGGTGCTGCATGTATACTCCGCATTTCTGCCTTCTGCCGTC
GACAAGTTTGGGGTCGACGTCCTGGAAGCTAAGGGTGTGACGTGGCCGGC
TCAGATTACGCCGACAAGCGTCGAACCCCGAGTCGACGTCGAAGCGGAAG
TTGTTACCTGGGTACCGGATGATATCGCGAGCCTTGTCTGGGTGAGCTTG
GTTTTGGCGCTGGCCGTTTTACTTCTCTTGCAAATTACGCCGACAAGCGT
CGAACCCCGAGTCGACGTCGAAGCGGAAGTTGTTACCTGGGTACCGGATG
ATATCGCGAGCCTTGTCTGGGTGAGCTTGGTTTTGGCGCTGGCCGTTTTA
CTTCTCTTGCAA
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