mRNA_H-elongata_contig110246.839.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110246.839.1
Unique NamemRNA_H-elongata_contig110246.839.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A835YQT7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.690e-33
Identity = 58/77 (75.32%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQW++FL++GSTA YV++YS+YYF+FKTE  GFLQ+SFYFGYMGLFCVAL V+CG+IG+ GS+VFVKQIY+NIKVD
Sbjct:  524 HWQWISFLASGSTAGYVFLYSIYYFYFKTEMFGFLQISFYFGYMGLFCVALFVLCGTIGLAGSSVFVKQIYKNIKVD 600
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BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A2K1K8P8_PHYPA (Transmembrane 9 superfamily member n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K8P8_PHYPA)

HSP 1 Score: 112 bits (280), Expect = 3.020e-30
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQW +FLSA STA YVY+YS+YYF+ KT+ SGF Q+SFYFGY  +FC+ L + CG++G LGS++FV++IYRNIK D
Sbjct:   58 HWQWTSFLSAASTAGYVYLYSVYYFYMKTKMSGFFQISFYFGYTLMFCLGLGIFCGAVGYLGSSMFVRRIYRNIKCD 134
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BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A444E945_ENSVE (Transmembrane 9 superfamily member n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444E945_ENSVE)

HSP 1 Score: 114 bits (285), Expect = 6.990e-30
Identity = 48/77 (62.34%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQW +F SA STA+YVY+YS+YY++ KT+ SGF Q SFYFGY+ +FC+ L ++CG++G LGST+FV++IYRNIK D
Sbjct:  155 HWQWTSFFSAASTAVYVYLYSVYYYYMKTKMSGFFQTSFYFGYILMFCLGLGILCGAVGYLGSTLFVRRIYRNIKCD 231
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BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: D8LEX9_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 6.990e-30
Identity = 55/77 (71.43%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQWV+FLSA STA YV++YS YY WFKT QSGF+Q+SFYFGYMGLFC A           GSTVFVKQIYRNIKVD
Sbjct:  155 HWQWVSFLSAASTAGYVFLYSGYYLWFKTHQSGFMQISFYFGYMGLFCAAXXXXXXXXXXXGSTVFVKQIYRNIKVD 231
[Close]
BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A453K7A2_AEGTS (Transmembrane 9 superfamily member n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453K7A2_AEGTS)

HSP 1 Score: 110 bits (275), Expect = 1.160e-29
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQW +F SA STA+YVY+YS+YY+  KT+ SGF Q SFYFGY  +FC+ L ++CG+IG +GST+FV++IYRNIK D
Sbjct:   44 HWQWTSFFSAASTALYVYLYSIYYYHVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAIGYVGSTLFVRRIYRNIKCD 120
[Close]
BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A427A5K3_ENSVE (Transmembrane 9 superfamily member n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427A5K3_ENSVE)

HSP 1 Score: 113 bits (283), Expect = 1.400e-29
Identity = 48/77 (62.34%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQW +F SA STA+YVY+YS+YY++ KT+ SGF Q SFYFGY  +FC+ L ++CG++G LGST+FV++IYRNIK D
Sbjct:  155 HWQWTSFFSAASTAVYVYLYSVYYYYMKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSTLFVRRIYRNIKCD 231
[Close]
BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A0A9P6E2_ARUDO (Transmembrane 9 superfamily member n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9P6E2_ARUDO)

HSP 1 Score: 111 bits (278), Expect = 3.230e-29
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQW +F SA STA+YVY+YS+YY+  KT+ SGF Q SFYFGY  +FC+ L ++CG+IG LGST+FV++IYRNIK D
Sbjct:  119 HWQWTSFFSAASTALYVYLYSIYYYHVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAIGYLGSTLFVRRIYRNIKCD 195
[Close]
BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.540e-29
Identity = 56/77 (72.73%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIKVD 231
            HWQWV+FLSA STA YV++YS YY WFKT QSGF+Q+SFYFGYMGLFC AL          GSTVFVKQIYRNIKVD
Sbjct:  534 HWQWVSFLSAASTAGYVFLYSAYYLWFKTRQSGFIQISFYFGYMGLFCAALXXXXXXXXXXGSTVFVKQIYRNIKVD 610
[Close]
BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A371F5M1_MUCPR (Transmembrane 9 superfamily member (Fragment) n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A371F5M1_MUCPR)

HSP 1 Score: 108 bits (271), Expect = 8.580e-29
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIK 225
            HWQW +F SA STA+YVY+YS+YY++ KT+ SGF Q SFYFGY  +FC+ L ++CG++G LGS +FV++IYRNIK
Sbjct:   49 HWQWTSFFSAASTAVYVYLYSVYYYYVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIK 123
[Close]
BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Match: A0A371EE92_MUCPR (Transmembrane 9 superfamily member n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A371EE92_MUCPR)

HSP 1 Score: 108 bits (271), Expect = 1.140e-28
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVALAVMCGSIGVLGSTVFVKQIYRNIK 225
            HWQW +F SA STA+YVY+YS+YY++ KT+ SGF Q SFYFGY  +FC+ L ++CG++G LGS +FV++IYRNIK
Sbjct:   62 HWQWTSFFSAASTAVYVYLYSVYYYYVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIK 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110246.839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQT7_9STRA3.690e-3375.32Transmembrane 9 superfamily member n=1 Tax=Tribone... [more]
A0A2K1K8P8_PHYPA3.020e-3063.64Transmembrane 9 superfamily member n=2 Tax=Physcom... [more]
A0A444E945_ENSVE6.990e-3062.34Transmembrane 9 superfamily member n=1 Tax=Ensete ... [more]
D8LEX9_ECTSI6.990e-3071.43Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A453K7A2_AEGTS1.160e-2962.34Transmembrane 9 superfamily member n=3 Tax=Mesangi... [more]
A0A427A5K3_ENSVE1.400e-2962.34Transmembrane 9 superfamily member n=1 Tax=Ensete ... [more]
A0A0A9P6E2_ARUDO3.230e-2963.64Transmembrane 9 superfamily member n=1 Tax=Arundo ... [more]
A0A6H5KXN7_9PHAE7.540e-2972.73Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A371F5M1_MUCPR8.580e-2961.33Transmembrane 9 superfamily member (Fragment) n=3 ... [more]
A0A371EE92_MUCPR1.140e-2861.33Transmembrane 9 superfamily member n=3 Tax=Mesangi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110246contigH-elongata_contig110246:3..841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.4e-23
Seed eggNOG ortholog112098.XP_008614772.1
Preferred nameTM9SF3
KEGG koko:K02639,ko:K17087
KEGG Pathwayko00195,map00195
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
EggNOG free text desc.secretion of lysosomal enzymes
EggNOG OGsKOG1277@2759,KOG1278@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194,ko04147
Hectar predicted targeting categorysignal anchor
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.052966-CDS-H-elongata_contig110246:2..1331622929629.052966-CDS-H-elongata_contig110246:2..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110246 3..133 +
1691679097.7219143-CDS-H-elongata_contig110246:2..1331691679097.7219143-CDS-H-elongata_contig110246:2..133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110246 3..133 +
1622929629.0710773-CDS-H-elongata_contig110246:738..8411622929629.0710773-CDS-H-elongata_contig110246:738..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110246 739..841 +
1691679097.7353055-CDS-H-elongata_contig110246:738..8411691679097.7353055-CDS-H-elongata_contig110246:738..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110246 739..841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110246.839.1prot_H-elongata_contig110246.839.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110246 3..841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110246.839.1

>prot_H-elongata_contig110246.839.1 ID=prot_H-elongata_contig110246.839.1|Name=mRNA_H-elongata_contig110246.839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
HWQWVAFLSAGSTAIYVYMYSMYYFWFKTEQSGFLQVSFYFGYMGLFCVA
LAVMCGSIGVLGSTVFVKQIYRNIKVD*
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mRNA from alignment at H-elongata_contig110246:3..841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110246.839.1 ID=mRNA_H-elongata_contig110246.839.1|Name=mRNA_H-elongata_contig110246.839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=839bp|location=Sequence derived from alignment at H-elongata_contig110246:3..841+ (Himanthalia elongata Himel1 dioecious)
CATTGGCAGTGGGTGGCATTCCTCAGCGCCGGGTCTACCGCGATTTACGT
GTACATGTACTCTATGTATTATTTTTGGTTCAAGACGGAACAGAGCGGCT
TCCTTCAAGTCAGTTTCTACTTTGGGTACATGTGAGTCGAGGACGAAGAC
GAGGACAAGGACGATTTTTCTGGACAATCTGAAAGCTGGTGAAGAAGCAG
CTTGTAATGTTTTGTTTTGTTTACACTCGCGGATGGAATTTGGAATGCCT
CGCGAACCCCTTCCCCCCCCCCCCCGCCTCCTCGAATATTGAGATTGGAA
TCCCGAAGGGCCAGCTATTTTATGTATTTTCTTTTCCCACTTCCGTTCTC
TTGAGGCCTGGGCATAACGCGGAAGCTACGGCAACAGCGGTCTGTCTTTC
TCAAATGCCGCCCTGCTCCAATCCGCGTGTTTGCCATAGCTAGGCAGAGT
AGGATCGAAAAATACCGCCGCCATATCTATTCCGAGATCCCTGCCATGTT
GTCGGTCTTTTCTGTTTCTGAGCAATAAAAATTGGTGCGGGGTGTGGTGA
GAGCGCTCTTCAAGGCGAGGGAGGTGACAGGGGACGGTTAGGGTGAGCAA
GAGGTAGCAAAGGCCGGTATGACTGTAGTTTGTTTGTGTGTGTGAGAGAG
AGATAGATAGATAGTATATATGCCTTTCTTGAACGCTTGGCCGTGATCAT
GACTCAGATCGCTTCCCGTCCCGATTCTCCGCCCAGGGGTCTCTTCTGCG
TGGCGCTGGCAGTCATGTGCGGGTCCATCGGGGTGCTGGGGAGCACTGTC
TTTGTGAAACAGATCTACCGGAACATCAAGGTGGACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig110246:3..841+

>mRNA_H-elongata_contig110246.839.1 ID=mRNA_H-elongata_contig110246.839.1|Name=mRNA_H-elongata_contig110246.839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig110246:3..841+ (Himanthalia elongata Himel1 dioecious)
CATTGGCAGTGGGTGGCATTCCTCAGCGCCGGGTCTACCGCGATTTACGT
GTACATGTACTCTATGTATTATTTTTGGTTCAAGACGGAACAGAGCGGCT
TCCTTCAAGTCAGTTTCTACTTTGGGTACATCATTGGCAGTGGGTGGCAT
TCCTCAGCGCCGGGTCTACCGCGATTTACGTGTACATGTACTCTATGTAT
TATTTTTGGTTCAAGACGGAACAGAGCGGCTTCCTTCAAGTCAGTTTCTA
CTTTGGGTACATGGGTCTCTTCTGCGTGGCGCTGGCAGTCATGTGCGGGT
CCATCGGGGTGCTGGGGAGCACTGTCTTTGTGAAACAGATCTACCGGAAC
ATCAAGGTGGACTAAGGGTCTCTTCTGCGTGGCGCTGGCAGTCATGTGCG
GGTCCATCGGGGTGCTGGGGAGCACTGTCTTTGTGAAACAGATCTACCGG
AACATCAAGGTGGACTAA
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