mRNA_H-elongata_contig11024.838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11024.838.1
Unique NamemRNA_H-elongata_contig11024.838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: D8LRL3_ECTSI (Sulfate adenylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL3_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 6.930e-116
Identity = 166/185 (89.73%), Postives = 175/185 (94.59%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLREAN 555
            LFTRALDAENVG DGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETAN RV+WAYLPYSMHMAGPREA+QHMMIRKNFGCTHFIIGRDMAGSKS VTG+DFYGAY+AQEFA ANSEELGV+ VPSLNLV+TEEEGYVTADVAE K LTKKSLSGTKFR+MLR G +IP+WFAFKSVVDVLR AN
Sbjct:  265 LFTRALDAENVGGDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANPRVRWAYLPYSMHMAGPREAMQHMMIRKNFGCTHFIIGRDMAGSKSSVTGDDFYGAYEAQEFAAANSEELGVKCVPSLNLVYTEEEGYVTADVAEEKSLTKKSLSGTKFRQMLRGGEDIPEWFAFKSVVDVLRSAN 449
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A7S1H1K0_9STRA (Sulfate adenylyltransferase n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1K0_9STRA)

HSP 1 Score: 313 bits (802), Expect = 2.180e-105
Identity = 150/183 (81.97%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLRE 549
            LFTRALD ENVG  GVV+VHPTCGPTQADDIPG+VRY+TYEVLKEETA+ RVKW YLPYSMHMAGPREAIQHM+IRKNFGCTHFIIGRDMAGSKS +TG+DFYGAYDAQ+ A+AN+E+LGV  VPSLNLV+ EEEGYVTAD AE KGL+ K LSGTKFR+MLR G +IP+WFAFKSVV VLRE
Sbjct:  116 LFTRALDDENVGEGGVVLVHPTCGPTQADDIPGNVRYKTYEVLKEETADPRVKWDYLPYSMHMAGPREAIQHMIIRKNFGCTHFIIGRDMAGSKSSITGDDFYGAYDAQDTAKANAEKLGVTPVPSLNLVYCEEEGYVTADFAEEKGLSIKKLSGTKFRQMLRGGEDIPEWFAFKSVVKVLRE 298
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A7S0G9K1_9STRA (Sulfate adenylyltransferase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G9K1_9STRA)

HSP 1 Score: 317 bits (812), Expect = 4.340e-105
Identity = 149/182 (81.87%), Postives = 165/182 (90.66%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLR 546
            LFTRALDAENVG  G+V+VHPTCGPTQADDIPGDVRY+TYEVLKEETAN R +WAYLPYSMHMAGPREAIQHMM+RKN+GCTHFIIGRDMAGSKS VTGEDFYGAYDAQ+FAR N+  LG+Q VPSLNLV+TEE+GYVTAD A+ + L+   LSGTKFRKMLR G +IP+WFAFKSVVDVLR
Sbjct:  246 LFTRALDAENVGKTGIVLVHPTCGPTQADDIPGDVRYKTYEVLKEETANPRTRWAYLPYSMHMAGPREAIQHMMVRKNYGCTHFIIGRDMAGSKSSVTGEDFYGAYDAQDFARENAPRLGMQTVPSLNLVYTEEKGYVTADEADAEKLSPLKLSGTKFRKMLRGGEDIPEWFAFKSVVDVLR 427
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A5B8N1Q9_9CHLO (Sulfate adenylyltransferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N1Q9_9CHLO)

HSP 1 Score: 318 bits (815), Expect = 4.430e-105
Identity = 151/185 (81.62%), Postives = 167/185 (90.27%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLREAN 555
            LFTRALDA+NVG DGVV+VHPTCGPTQ DDIPG VRYRTYEVLKEETA+ +V WAYLPYSMHMAGPREAIQHM+IRKN+GCTHFIIGRDMAGSKSC+ GEDFYGAYDAQ+ A+  SEELGV+ VPSLN+V+TEEEGYVTADVA  KGL+ K LSGTKFR+MLR G +IP+WFAFKSVV VLRE N
Sbjct:  281 LFTRALDADNVGGDGVVLVHPTCGPTQDDDIPGVVRYRTYEVLKEETADPKVNWAYLPYSMHMAGPREAIQHMIIRKNYGCTHFIIGRDMAGSKSCLDGEDFYGAYDAQDLAKEMSEELGVKTVPSLNIVYTEEEGYVTADVASDKGLSIKKLSGTKFRQMLRAGEDIPEWFAFKSVVKVLRENN 465
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A7S1GIZ6_CYCTE (Sulfate adenylyltransferase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIZ6_CYCTE)

HSP 1 Score: 315 bits (807), Expect = 2.480e-104
Identity = 151/183 (82.51%), Postives = 166/183 (90.71%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLRE 549
            LFTRALD   VGSDGVV+VHPTCGPTQADDIPGDVR++TYEVLKEETAN RVKW YLPYSMHMAGPREAIQHM+IRKNFGCTHFIIGRDMAGSKS VTGEDFYGAY+AQ+ A+ NS++LGV  VPSLNLV+TEEEGYVTAD A+ K L+ K LSGTKFRKMLR G +IP+WFAFKSVV+VLRE
Sbjct:  246 LFTRALDDPLVGSDGVVLVHPTCGPTQADDIPGDVRFKTYEVLKEETANPRVKWEYLPYSMHMAGPREAIQHMIIRKNFGCTHFIIGRDMAGSKSSVTGEDFYGAYEAQDIAKDNSDKLGVTPVPSLNLVYTEEEGYVTADYAKDKDLSTKKLSGTKFRKMLRAGDDIPEWFAFKSVVEVLRE 428
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A7S2T0B3_9CHLO (Sulfate adenylyltransferase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2T0B3_9CHLO)

HSP 1 Score: 314 bits (804), Expect = 3.790e-103
Identity = 149/182 (81.87%), Postives = 165/182 (90.66%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLR 546
            LFTRALDA+NVG DGVV+VHPTCGPTQ DDIPG VRYRTYEVLKEETA+ +V WAYLPYSMHMAGPREAIQHM+IRKN+GCTHFIIGRDMAGSKSC+ GEDFYGAYDAQ+ A+  SEELGV+ VPSLN+V+TEEEGYVTADVA  KGL+ K LSGTKFR+MLR G +IP+WFAFKSVV VLR
Sbjct:  303 LFTRALDADNVGEDGVVLVHPTCGPTQDDDIPGVVRYRTYEVLKEETADPKVHWAYLPYSMHMAGPREAIQHMIIRKNYGCTHFIIGRDMAGSKSCLDGEDFYGAYDAQDLAKEMSEELGVKTVPSLNIVYTEEEGYVTADVASDKGLSIKKLSGTKFRQMLRAGEDIPEWFAFKSVVKVLR 484
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: W7TEH2_9STRA (Sulfate adenylyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEH2_9STRA)

HSP 1 Score: 311 bits (797), Expect = 6.530e-103
Identity = 149/183 (81.42%), Postives = 164/183 (89.62%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLRE 549
            LFTRALDA NVG DG+V+VHPTCGPTQADDIPG VRYRTYEVLKEETAN R++WAYLPYSMHMAGPREA+QHMMIRKN+GCTHFIIGRDMAGSKS VTGEDFYGAYDAQ FA++ S+ELGV  VPSL+LVFTEEEGYVTA+ A+   L  K LSGTKFR+MLR G +IP+WFAFKSVV VLRE
Sbjct:  240 LFTRALDAPNVGKDGIVLVHPTCGPTQADDIPGIVRYRTYEVLKEETANPRIEWAYLPYSMHMAGPREALQHMMIRKNYGCTHFIIGRDMAGSKSSVTGEDFYGAYDAQNFAKSISKELGVDTVPSLDLVFTEEEGYVTAERAKEANLHIKKLSGTKFRQMLRAGEDIPEWFAFKSVVQVLRE 422
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A7S2A4Q0_TRICV (Sulfate adenylyltransferase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4Q0_TRICV)

HSP 1 Score: 311 bits (797), Expect = 1.030e-102
Identity = 149/183 (81.42%), Postives = 162/183 (88.52%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLRE 549
            LFTRALD   VG DGVV+VHPTCGPTQADDIPGDVRY+TYEVLKEET N R +W YLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKS VTGEDFYGAYDAQ+FA+ +   LGV  VPSLNLV+TEEEGYVTAD A+ KGL++K LSGTKFR+MLR G +IP+WFAFKSVV VLRE
Sbjct:  254 LFTRALDDPLVGEDGVVLVHPTCGPTQADDIPGDVRYKTYEVLKEETHNPRTRWEYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSSVTGEDFYGAYDAQDFAKEHGPRLGVMPVPSLNLVYTEEEGYVTADEAKEKGLSEKKLSGTKFRQMLRGGEDIPEWFAFKSVVSVLRE 436
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A7S2GMQ8_9STRA (Sulfate adenylyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GMQ8_9STRA)

HSP 1 Score: 310 bits (794), Expect = 1.640e-102
Identity = 150/183 (81.97%), Postives = 161/183 (87.98%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLRE 549
            LFTRALDAENVG  GVVMVHPTCGPTQADDI G VRY+TYEVLKEETAN ++ W YLPYSMHMAGPREAI HMMIRKN+GCTHFIIGRDMAGSKS + GEDFYGAY+AQEFA + S ELGV  VPSLNLV+TEEEGYVTADVAE K L+ K LSGTKFRKMLR G +IP+WFAFKSVV VLRE
Sbjct:  235 LFTRALDAENVGEGGVVMVHPTCGPTQADDIDGTVRYKTYEVLKEETANPKIFWNYLPYSMHMAGPREAIHHMMIRKNYGCTHFIIGRDMAGSKSSLDGEDFYGAYEAQEFAESKSAELGVVCVPSLNLVYTEEEGYVTADVAEEKSLSMKKLSGTKFRKMLRGGEDIPEWFAFKSVVKVLRE 417
[Close]
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Match: A0A7S0F6Q0_9STRA (Sulfate adenylyltransferase n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F6Q0_9STRA)

HSP 1 Score: 306 bits (785), Expect = 2.100e-102
Identity = 146/183 (79.78%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:    1 LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANARVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGEDFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTKKSLSGTKFRKMLREGGEIPDWFAFKSVVDVLRE 549
            LFTRALD   +G  G+V+VHPTCGPTQADDIPG VRY+TYEVLKEETAN RV W YLPYSMHMAGPREAIQHM+IRKNFGCTHFIIGRDMAGSKS +TGED+YGAYDAQ+FAR +SE+LGV  VPSLNLV+T+EEGYVTAD A+ KGL+ K LSGTKFR+MLR G +IP+WFAFKSVV VLRE
Sbjct:  144 LFTRALDDPLIGEGGIVLVHPTCGPTQADDIPGTVRYKTYEVLKEETANPRVFWEYLPYSMHMAGPREAIQHMIIRKNFGCTHFIIGRDMAGSKSSITGEDYYGAYDAQDFARESSEKLGVTPVPSLNLVYTDEEGYVTADEAKEKGLSLKKLSGTKFRQMLRGGEDIPEWFAFKSVVSVLRE 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11024.838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRL3_ECTSI6.930e-11689.73Sulfate adenylyltransferase n=1 Tax=Ectocarpus sil... [more]
A0A7S1H1K0_9STRA2.180e-10581.97Sulfate adenylyltransferase n=1 Tax=Thalassionema ... [more]
A0A7S0G9K1_9STRA4.340e-10581.87Sulfate adenylyltransferase n=1 Tax=Proboscia iner... [more]
A0A5B8N1Q9_9CHLO4.430e-10581.62Sulfate adenylyltransferase n=1 Tax=Chloropicon pr... [more]
A0A7S1GIZ6_CYCTE2.480e-10482.51Sulfate adenylyltransferase n=1 Tax=Cyclophora ten... [more]
A0A7S2T0B3_9CHLO3.790e-10381.87Sulfate adenylyltransferase n=2 Tax=Chloropicon pr... [more]
W7TEH2_9STRA6.530e-10381.42Sulfate adenylyltransferase n=3 Tax=Monodopsidacea... [more]
A0A7S2A4Q0_TRICV1.030e-10281.42Sulfate adenylyltransferase n=1 Tax=Trieres chinen... [more]
A0A7S2GMQ8_9STRA1.640e-10281.97Sulfate adenylyltransferase n=1 Tax=Dictyocha spec... [more]
A0A7S0F6Q0_9STRA2.100e-10279.78Sulfate adenylyltransferase n=2 Tax=Craspedostauro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11024contigH-elongata_contig11024:6845..8840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.7
Seed ortholog evalue2.6e-92
Seed eggNOG ortholog2880.D8LRL3
Preferred nameMET3
KEGG rclassRC02809,RC02889
KEGG koko:K00958
KEGG ReactionR00529,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176,M00596
GOsGO:0000096,GO:0000103,GO:0003674,GO:0003824,GO:0004779,GO:0004781,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010134,GO:0016740,GO:0016772,GO:0016779,GO:0019379,GO:0019419,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0070566,GO:0071704,GO:1901564
EggNOG free text desc.sulfate adenylyltransferase (ATP) activity
EggNOG OGsCOG2046@1,KOG0636@2759
EC2.7.7.4
COG Functional cat.P
BiGG ReactioniRC1080.CRv4_Au5_s3_g11218_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size561
Cds size561
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11024.838.1prot_H-elongata_contig11024.838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11024 6845..8840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.9038033-CDS-H-elongata_contig11024:6844..69611622929628.9038033-CDS-H-elongata_contig11024:6844..6961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 6845..6961 -
1691679097.6488469-CDS-H-elongata_contig11024:6844..69611691679097.6488469-CDS-H-elongata_contig11024:6844..6961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 6845..6961 -
1622929628.9227097-CDS-H-elongata_contig11024:7223..73371622929628.9227097-CDS-H-elongata_contig11024:7223..7337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 7224..7337 -
1691679097.6746085-CDS-H-elongata_contig11024:7223..73371691679097.6746085-CDS-H-elongata_contig11024:7223..7337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 7224..7337 -
1622929628.9651494-CDS-H-elongata_contig11024:7582..77081622929628.9651494-CDS-H-elongata_contig11024:7582..7708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 7583..7708 -
1691679097.6850293-CDS-H-elongata_contig11024:7582..77081691679097.6850293-CDS-H-elongata_contig11024:7582..7708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 7583..7708 -
1622929628.9813657-CDS-H-elongata_contig11024:8061..81581622929628.9813657-CDS-H-elongata_contig11024:8061..8158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 8062..8158 -
1691679097.6954296-CDS-H-elongata_contig11024:8061..81581691679097.6954296-CDS-H-elongata_contig11024:8061..8158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 8062..8158 -
1622929629.0008817-CDS-H-elongata_contig11024:8733..88401622929629.0008817-CDS-H-elongata_contig11024:8733..8840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 8734..8840 -
1691679097.711892-CDS-H-elongata_contig11024:8733..88401691679097.711892-CDS-H-elongata_contig11024:8733..8840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11024 8734..8840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11024.838.1

>prot_H-elongata_contig11024.838.1 ID=prot_H-elongata_contig11024.838.1|Name=mRNA_H-elongata_contig11024.838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
LFTRALDAENVGSDGVVMVHPTCGPTQADDIPGDVRYRTYEVLKEETANA
RVKWAYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSCVTGE
DFYGAYDAQEFARANSEELGVQIVPSLNLVFTEEEGYVTADVAETKGLTK
KSLSGTKFRKMLREGGEIPDWFAFKSVVDVLREANK*
back to top

mRNA from alignment at H-elongata_contig11024:6845..8840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11024.838.1 ID=mRNA_H-elongata_contig11024.838.1|Name=mRNA_H-elongata_contig11024.838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1996bp|location=Sequence derived from alignment at H-elongata_contig11024:6845..8840- (Himanthalia elongata Himel1 dioecious)
CTCTTTACGCGCGCGCTTGACGCGGAAAACGTGGGTTCCGACGGTGTGGT
GATGGTTCATCCCACGTGCGGACCTACCCAGGCGGATGACATCCCCGGTG
ACGTGAGGTGAGCTCAGACCGTCTTTTCGCAAGACTCCCGTCCGTCTTGT
CTGAAGAAAAACTTGATTGACGCACATGATACTAGGAAGCGTTTGGAAAT
ATTTGTAGCATGTTAAGATGGTCGGGTCGCACGGCACGGAGTGCCATCTC
GTGAACCCGAAATATCTCCCGCGCATTCAGGCGCTCACGGAATCTGAGAG
TTTAAACAGGGCATATCCATCGACGACGCAGAGCAAGTGACGTTTGAAAT
GGCGTCATCTGCTGATATCTGCGTAAAGGGTACGATTCTGTGTGTGTGTG
TGTGTATTTATTAAATTGCACATAACCGGACAATCCGGGCATGTCATGCT
AGTCATTCTTTTCTACTTCGTATTTGCATTGATCCTCCCGATGGTGGATC
AATGGTTTCTACGTGTGTGAGAGTTTTCTGTGAATATATGTTGTGCGTGG
GGGTGGTCATAACCATTGGTCTCTTTTTTCTCCTCCCGTCCCTTCGATGG
CCGACTAATATACCCTTTCCTCCTACGAGAATGCAAGGTAGCCCCTTATC
TTACGCCGGTTGCTCTAACGATGCCGTCGAAGGTACCGCACATACGAGGT
GCTGAAGGAGGAAACGGCCAACGCACGCGTCAAGTGGGCGTACCTGCCGT
ACTCCATGCACATGGCGGGCCCACGCGAGGTTAGAGCTAAGCGATAACTT
TCTAGCGTCCAATACCGTTCGTTTATCGAAGGGACCGAAAAGAATCTGAT
GCCGGGAGTGAATCACCCACCGCACACAGTGGCGCTTGCTTTTGAGGGTG
GGAGCGTTCATATCTTCATCTTGTGATGCGACGGCGAATTAAGCTCGTCT
TCATAGTATCGTCGTCGTCGTCATCGTTGCCCGCGCGCTCCATCGTGCAC
GCTTCTCGGGTCTCGCCCTTTTGAGGAAACTGTAGCACCCGCGTGCGTGC
GGGACGATGAGCGTTTCTAGTTCCGTGTGCCGCCAAAGCCTACTGCGATT
TTTCCGACTCTCTCTCCATTGGCTCCCCGCAGGCGATCCAGCACATGATG
ATCCGCAAGAACTTTGGTTGCACGCATTTCATCATCGGGAGAGACATGGC
GGGGTCGAAAAGCTGCGTCACGGGAGAGGACTTTTACGGGGCCTACGACG
CGCAAGAGGTGATCCCCTCGAGTGGGCTGAAAGCTTGAAACTAATTCCCA
AGGCACCTTTCGACGGGAGTTATTCCCCTGAACCTGCTTCAATCAATCAG
CCGAGCTGTCTCTGGCGGTGGGGTCACCAAAGTAAATTTTGAGCCAACGT
TAGCGTTAATTTTCTCTTCGCAAAATTTCACGCGCGCGCGCGCAAACACG
TACGGACTGTGGATCGCGGATCGCGGATATCACCTGTCCCCGTTCTCCGG
CAGTTCGCGAGGGCTAACTCGGAAGAGCTCGGCGTACAGATCGTCCCGTC
TCTAAATTTGGTGTTCACGGAGGAGGAGGGATACGTCACGGCCGATGTCG
CTGAGACGAAGGGCTTGGTGAGTTCTCACTGGTGATAGATCGCGCGTCGT
GCTTTTGCGGAGCAGATGCCACACCAAGATTTCCTTCTTCTTTCGTTGGT
AATATTTTAAGGCCACGTGTTCGGGCGCCGAAAGTTCCTCCGCCAACTGT
GTGCACACGTCTATGTCTATAGAATGTCGTAGACATCTCATCAGTCAATG
GTGAAGCGTTGTTACAGTCCGATCTGTCCGTTTTATGTATGCTTGTATGT
GTGTGGATGATGCCTTTGTTGACACCCAGACGAAGAAGTCGCTCTCGGGC
ACGAAGTTCCGCAAGATGCTTCGCGAAGGAGGCGAAATCCCAGACTGGTT
TGCCTTCAAGTCCGTCGTGGACGTGCTCCGCGAGGCTAACAAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11024:6845..8840-

>mRNA_H-elongata_contig11024.838.1 ID=mRNA_H-elongata_contig11024.838.1|Name=mRNA_H-elongata_contig11024.838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig11024:6845..8840- (Himanthalia elongata Himel1 dioecious)
CTCTTTACGCGCGCGCTTGACGCGGAAAACGTGGGTTCCGACGGTGTGGT
GATGGTTCATCCCACGTGCGGACCTACCCAGGCGGATGACATCCCCGGTG
ACGTGAGCTCTTTACGCGCGCGCTTGACGCGGAAAACGTGGGTTCCGACG
GTGTGGTGATGGTTCATCCCACGTGCGGACCTACCCAGGCGGATGACATC
CCCGGTGACGTGAGGTACCGCACATACGAGGTGCTGAAGGAGGAAACGGC
CAACGCACGCGTCAAGTGGGCGTACCTGCCGTACTCCATGCACATGGCGG
GCCCACGCGAGGTACCGCACATACGAGGTGCTGAAGGAGGAAACGGCCAA
CGCACGCGTCAAGTGGGCGTACCTGCCGTACTCCATGCACATGGCGGGCC
CACGCGAGGCGATCCAGCACATGATGATCCGCAAGAACTTTGGTTGCACG
CATTTCATCATCGGGAGAGACATGGCGGGGTCGAAAAGCTGCGTCACGGG
AGAGGACTTTTACGGGGCCTACGACGCGCAAGAGGCGATCCAGCACATGA
TGATCCGCAAGAACTTTGGTTGCACGCATTTCATCATCGGGAGAGACATG
GCGGGGTCGAAAAGCTGCGTCACGGGAGAGGACTTTTACGGGGCCTACGA
CGCGCAAGAGTTCGCGAGGGCTAACTCGGAAGAGCTCGGCGTACAGATCG
TCCCGTCTCTAAATTTGGTGTTCACGGAGGAGGAGGGATACGTCACGGCC
GATGTCGCTGAGACGAAGGGCTTGTTCGCGAGGGCTAACTCGGAAGAGCT
CGGCGTACAGATCGTCCCGTCTCTAAATTTGGTGTTCACGGAGGAGGAGG
GATACGTCACGGCCGATGTCGCTGAGACGAAGGGCTTGACGAAGAAGTCG
CTCTCGGGCACGAAGTTCCGCAAGATGCTTCGCGAAGGAGGCGAAATCCC
AGACTGGTTTGCCTTCAAGTCCGTCGTGGACGTGCTCCGCGAGGCTAACA
AGTAAACGAAGAAGTCGCTCTCGGGCACGAAGTTCCGCAAGATGCTTCGC
GAAGGAGGCGAAATCCCAGACTGGTTTGCCTTCAAGTCCGTCGTGGACGT
GCTCCGCGAGGCTAACAAGTAA
back to top