mRNA_H-elongata_contig110185.834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110185.834.1
Unique NamemRNA_H-elongata_contig110185.834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110185.834.1 vs. uniprot
Match: D7FSH8_ECTSI (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH8_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.350e-15
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    4 ADKFFVATAKGMNSRRGSWPYDSVRKDLRDEMREFASERLQLVQ 135
            ADKFF  T +GMNSR GSWP +SVRK+LRDEMREFASERLQLVQ
Sbjct:  395 ADKFFAKTVRGMNSRHGSWPSNSVRKELRDEMREFASERLQLVQ 438
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BLAST of mRNA_H-elongata_contig110185.834.1 vs. uniprot
Match: A0A6H5JTE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 5.040e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   37 MNSRRGSWPYDSVRKDLRDEMREFASERLQLVQ 135
            MNSR GSWP +SVRK+LRDEMREFASERLQLVQ
Sbjct:    1 MNSRHGSWPSNSVRKELRDEMREFASERLQLVQ 33
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110185.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSH8_ECTSI9.350e-1581.82RHD3b, RHD3/Sey1 family GTPase involved in the ER-... [more]
A0A6H5JTE5_9PHAE5.040e-1087.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110185contigH-elongata_contig110185:1961..2098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue9.6e-12
Seed eggNOG ortholog2880.D7FSH8
EggNOG OGs2E20I@1,2S99P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.4399343-CDS-H-elongata_contig110185:1960..20981622929628.4399343-CDS-H-elongata_contig110185:1960..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110185 1961..2098 -
1691679097.4266915-CDS-H-elongata_contig110185:1960..20981691679097.4266915-CDS-H-elongata_contig110185:1960..2098Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110185 1961..2098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110185.834.1prot_H-elongata_contig110185.834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110185 1961..2098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110185.834.1

>prot_H-elongata_contig110185.834.1 ID=prot_H-elongata_contig110185.834.1|Name=mRNA_H-elongata_contig110185.834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
VADKFFVATAKGMNSRRGSWPYDSVRKDLRDEMREFASERLQLVQV
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mRNA from alignment at H-elongata_contig110185:1961..2098-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110185.834.1 ID=mRNA_H-elongata_contig110185.834.1|Name=mRNA_H-elongata_contig110185.834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig110185:1961..2098- (Himanthalia elongata Himel1 dioecious)
GTGGCGGACAAGTTCTTCGTGGCCACGGCGAAGGGCATGAACAGTCGACG
CGGCTCATGGCCCTACGACAGCGTGCGGAAGGATCTCAGGGACGAGATGA
GAGAGTTCGCGAGTGAGCGGCTTCAGCTGGTGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig110185:1961..2098-

>mRNA_H-elongata_contig110185.834.1 ID=mRNA_H-elongata_contig110185.834.1|Name=mRNA_H-elongata_contig110185.834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig110185:1961..2098- (Himanthalia elongata Himel1 dioecious)
GTGGCGGACAAGTTCTTCGTGGCCACGGCGAAGGGCATGAACAGTCGACG
CGGCTCATGGCCCTACGACAGCGTGCGGAAGGATCTCAGGGACGAGATGA
GAGAGTTCGCGAGTGAGCGGCTTCAGCTGGTGCAGGTGGTGGCGGACAAG
TTCTTCGTGGCCACGGCGAAGGGCATGAACAGTCGACGCGGCTCATGGCC
CTACGACAGCGTGCGGAAGGATCTCAGGGACGAGATGAGAGAGTTCGCGA
GTGAGCGGCTTCAGCTGGTGCAGGTG
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