mRNA_H-elongata_contig110149.830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110149.830.1
Unique NamemRNA_H-elongata_contig110149.830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: D8LRA3_ECTSI (PPPDE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 8.350e-22
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPRQVSAEGCTFK 159
            VYDLH SNSWLQ+IG+G YHSG+E+GGVEYTFSE G+A HPPRQ++ +G +FK
Sbjct:   12 VYDLHESNSWLQHIGLGAYHSGLEIGGVEYTFSEAGVAQHPPRQIAGDGVSFK 64
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A835YXL8_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.420e-11
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPRQVSAEG 147
            VYDLH +N WL  +G+G+YHSGVE+ G EYTFS+ G+  H P+     G
Sbjct:   13 VYDLHQANGWLSRVGLGIYHSGVEIAGKEYTFSDDGVFHHAPKGAGRGG 61
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A7S2SKP3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKP3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.420e-10
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPRQ 132
            VYDLH  NSWL  IG G++H+G+E+GG+EY+FS+ GI    PRQ
Sbjct:   13 VYDLHQGNSWLSPIGFGVFHTGLEIGGMEYSFSQEGIFKCAPRQ 56
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A2D4C6T3_PYTIN (PPPDE domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6T3_PYTIN)

HSP 1 Score: 55.1 bits (131), Expect = 1.800e-8
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTF-SEIGIALHPPRQVSAEGCTFK 159
            VYDL  SN +  Y+G+G+YH+GVE+GG E++F S  G+   PPRQ  A G  F+
Sbjct:   14 VYDLSDSNDYTAYVGLGLYHTGVEIGGDEFSFASGAGVFASPPRQ--AAGARFR 65
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A2D4CBD6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBD6_PYTIN)

HSP 1 Score: 55.1 bits (131), Expect = 2.000e-7
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTF-SEIGIALHPPRQVSAEGCTFK 159
            VYDL  SN +  Y+G+G+YH+GVE+GG E++F S  G+   PPRQ  A G  F+
Sbjct: 1576 VYDLSDSNDYTAYVGLGLYHTGVEIGGDEFSFASGAGVFASPPRQ--AAGARFR 1627
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A7R9UE51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE51_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.980e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTF-SEIGIALHPPR 129
            VYDL  +N WL  +G+G +HSGVEV G EYTF SE G+  H P+
Sbjct:   39 VYDLADANDWLYPVGLGAFHSGVEVLGEEYTFASEAGVFSHSPK 82
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A5A8DIA0_CAFRO (PPPDE domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DIA0_CAFRO)

HSP 1 Score: 52.0 bits (123), Expect = 6.030e-7
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPRQVS 138
            VYDLH +N  L+++G+G YHSGVEV G EYTF+  G+    P+  +
Sbjct:   17 VYDLHPANEHLRFLGLGAYHSGVEVFGSEYTFANGGVFSTTPKDAN 62
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A1Z5KR37_FISSO (PPPDE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR37_FISSO)

HSP 1 Score: 52.8 bits (125), Expect = 8.950e-7
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPRQVSAEGCTFK 159
            +YDLH  N  L  +G G+YHSGVE+ G EY+F+  GI   PP+  +A G  F+
Sbjct:   20 IYDLHPQNETLHGVGFGIYHSGVEISGTEYSFANGGIFEIPPK--TAPGAKFR 70
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: W7U8D7_9STRA (PPPDE domain-containing protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8D7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.810e-6
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   19 SNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPR 129
            + SW++ +G+G +H+GVEVGGVEYTF++ G+  H P+
Sbjct:   22 TGSWMRRVGLGAWHTGVEVGGVEYTFAQNGVFFHVPK 58
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BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Match: A0A5A8C1B2_CAFRO (PPPDE domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8C1B2_CAFRO)

HSP 1 Score: 52.0 bits (123), Expect = 2.250e-6
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPRQVS 138
            VYDLH +N  L+++G+G YHSGVEV G EYTF+  G+    P+  +
Sbjct:   17 VYDLHPANEHLRFLGLGAYHSGVEVFGSEYTFANGGVFSTTPKDAN 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110149.830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA3_ECTSI8.350e-2271.70PPPDE domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YXL8_9STRA7.420e-1153.06PPPDE putative peptidase domain-containing protein... [more]
A0A7S2SKP3_9STRA5.420e-1059.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4C6T3_PYTIN1.800e-850.00PPPDE domain-containing protein (Fragment) n=1 Tax... [more]
A0A2D4CBD6_PYTIN2.000e-750.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7R9UE51_9STRA3.980e-756.82Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A5A8DIA0_CAFRO6.030e-750.00PPPDE domain-containing protein n=1 Tax=Cafeteria ... [more]
A0A1Z5KR37_FISSO8.950e-747.17PPPDE domain-containing protein n=2 Tax=Fistulifer... [more]
W7U8D7_9STRA1.810e-651.35PPPDE domain-containing protein n=3 Tax=Nannochlor... [more]
A0A5A8C1B2_CAFRO2.250e-650.00PPPDE domain-containing protein n=3 Tax=Sar TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110149contigH-elongata_contig110149:1348..1506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue8.7e-17
Seed eggNOG ortholog2880.D8LRA3
Preferred nameDESI2
KEGG koko:K20057
GOsGO:0002009,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006807,GO:0007275,GO:0007369,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0016579,GO:0016787,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048598,GO:0048729,GO:0048856,GO:0060026,GO:0060027,GO:0060429,GO:0061578,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0101005,GO:0140096,GO:1901564,GO:1990380
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-06_003270.1
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.236437-CDS-H-elongata_contig110149:1347..15061622929628.236437-CDS-H-elongata_contig110149:1347..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110149 1348..1506 +
1691679097.3317652-CDS-H-elongata_contig110149:1347..15061691679097.3317652-CDS-H-elongata_contig110149:1347..1506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110149 1348..1506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110149.830.1prot_H-elongata_contig110149.830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110149 1348..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110149.830.1

>prot_H-elongata_contig110149.830.1 ID=prot_H-elongata_contig110149.830.1|Name=mRNA_H-elongata_contig110149.830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
VYDLHHSNSWLQYIGIGMYHSGVEVGGVEYTFSEIGIALHPPRQVSAEGC
TFK
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mRNA from alignment at H-elongata_contig110149:1348..1506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110149.830.1 ID=mRNA_H-elongata_contig110149.830.1|Name=mRNA_H-elongata_contig110149.830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig110149:1348..1506+ (Himanthalia elongata Himel1 dioecious)
GTTTACGATCTGCACCACTCCAACTCGTGGCTCCAGTACATTGGCATAGG
AATGTACCATAGCGGGGTCGAGGTCGGGGGCGTGGAGTACACCTTCAGCG
AGATTGGCATCGCGTTGCACCCGCCGAGGCAGGTGTCCGCCGAGGGATGC
ACGTTTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig110149:1348..1506+

>mRNA_H-elongata_contig110149.830.1 ID=mRNA_H-elongata_contig110149.830.1|Name=mRNA_H-elongata_contig110149.830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig110149:1348..1506+ (Himanthalia elongata Himel1 dioecious)
GTTTACGATCTGCACCACTCCAACTCGTGGCTCCAGTACATTGGCATAGG
AATGTACCATAGCGGGGTCGAGGTCGGGGGCGTGGAGTACACCTTCAGCG
AGATTGGCATCGCGTTGCACCCGCCGAGGCAGGTGTCCGCCGAGGGATGC
ACGTTTAAGGTTTACGATCTGCACCACTCCAACTCGTGGCTCCAGTACAT
TGGCATAGGAATGTACCATAGCGGGGTCGAGGTCGGGGGCGTGGAGTACA
CCTTCAGCGAGATTGGCATCGCGTTGCACCCGCCGAGGCAGGTGTCCGCC
GAGGGATGCACGTTTAAG
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