mRNA_H-elongata_contig11007.825.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11007.825.1
Unique NamemRNA_H-elongata_contig11007.825.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: D8LGS1_ECTSI (Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS1_ECTSI)

HSP 1 Score: 395 bits (1015), Expect = 7.340e-127
Identity = 181/257 (70.43%), Postives = 209/257 (81.32%), Query Frame = 1
Query:    4 PLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSRWFANLAKARR 774
            PLDPDS+ DKA A RFVEFQL WWADPIYFGDYP+VM+  VG+RLP FT++E  LI GSNDFFGLNHYTSWY+TDIPD DPPR GTS +KARAAG+ LPET PGDGW  DIG +QTK+DL G  NG A   DWLT  PEGFR LL +V+ RYGRPII VTENG+ RAGE  + L+EA++D+ RQ +Y  Y+ SMV ++VED VDVR +YAWSILDNFEWSDG+ PRFGLT+VDYD  Q R PKDSS+WFA+LAKARR
Sbjct:  225 PLDPDSDADKATAERFVEFQLAWWADPIYFGDYPQVMKDLVGDRLPVFTEEESALIAGSNDFFGLNHYTSWYYTDIPDEDPPREGTSPAKARAAGITLPETPPGDGWSMDIGAIQTKMDLNGTMNGGAAATDWLTIAPEGFRPLLVWVASRYGRPIIFVTENGVDRAGEDEMELEEALKDEARQSYYHGYITSMVTAMVEDAVDVRGYYAWSILDNFEWSDGYRPRFGLTFVDYDNGQARYPKDSSKWFASLAKARR 481          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: A0A6H5JDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ5_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 4.150e-124
Identity = 177/257 (68.87%), Postives = 208/257 (80.93%), Query Frame = 1
Query:    4 PLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSRWFANLAKARR 774
            PLDPDS+ DKA A RF+EFQL WWADPIYFGDYP+VM+  VG+RLP FT++E  LI GSNDFFGLNHYTSWY+TDIPD DPPR GTS +KARAAG+ LPET PGDGW  DIG +QTK+DL G  NG A   DWLT  PEGFR LL +V+ RYGRPII +TENG+ RAGE  + L+EA++D+ R+ +Y  Y+ SMV ++VED VDVR +YAWSILDNFEWSDG+ PRFGLTYVDYD    R PKDSS+WFA+LA+ARR
Sbjct:  250 PLDPDSDADKATAERFMEFQLAWWADPIYFGDYPQVMKDVVGDRLPVFTEEESALIAGSNDFFGLNHYTSWYYTDIPDEDPPREGTSPAKARAAGITLPETPPGDGWAMDIGAIQTKMDLNGTMNGGAAATDWLTIAPEGFRPLLVWVASRYGRPIIFITENGVDRAGEDEMELEEALKDEARRSYYHGYITSMVTAMVEDAVDVRGYYAWSILDNFEWSDGYRPRFGLTYVDYDNGLARYPKDSSKWFASLAEARR 506          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: A0A162IDG4_9PEZI (Beta-glucosidase n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A162IDG4_9PEZI)

HSP 1 Score: 222 bits (565), Expect = 3.990e-62
Identity = 114/247 (46.15%), Postives = 152/247 (61.54%), Query Frame = 1
Query:    4 PLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLR-GRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSS 741
            P DP+  ED AAA R +EF + W+ADPIYFG YP  MR ++G+RLP FTD+E  L+ GSNDF+G+NHYT+ +                        + P T P D +   +G L+T  + + G   G  TQ  WL   P GFR LL ++S RYGRP I VTENG +  GE+ LP+   + D  R  +YD Y+ +M A++ EDGVDVR + AWS++DNFEW++G+  RFG+TYVDY   Q R PKDS+
Sbjct:  246 PWDPEDPEDVAAAERKIEFAISWFADPIYFGHYPASMRAQLGDRLPTFTDEERALVQGSNDFYGMNHYTANFIR----------------------HKPGTPPADDF---LGHLETLFESKQGATIGPETQSFWLRPHPAGFRDLLGWLSRRYGRPKIYVTENGTSIKGENDLPVPAVLHDDFRTRYYDGYVRAMAAAVAEDGVDVRGYMAWSLMDNFEWAEGYETRFGVTYVDYAHGQKRLPKDSA 467          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: A0A7S2FHU7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHU7_9STRA)

HSP 1 Score: 222 bits (565), Expect = 4.950e-62
Identity = 113/253 (44.66%), Postives = 147/253 (58.10%), Query Frame = 1
Query:    1 QPLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSRWFANL 759
            +PLD        AA RFVEF+L W+ADPI+ GDYP VM+ RVG+RLP FT  E   + G+ DFFGLNHYTS +     +S                        GD W  D G      DL G P G  +   WL  VP GFR  L +V +RY  P I+VTENG++  GES   L++A+ D  R ++Y  Y+ +M  +I EDGVDV  ++AWS +DNFEW+DG+  RFG+ YVDYD E  R  KDSS+W+ ++
Sbjct:  256 EPLDSTDATSVEAAERFVEFELAWYADPIFLGDYPAVMKARVGDRLPTFTKAEKEALLGAQDFFGLNHYTSKFIASSGESG-----------------------GDSWGGDCGTTSYTKDLDGNPIGADSDSSWLKVVPWGFRKSLNWVKDRYDSPTIIVTENGVSVPGESDAALEDALADSFRIDFYSQYIGNMSLAISEDGVDVAGYFAWSFMDNFEWTDGYNVRFGMHYVDYDTE-TRYAKDSSKWYKDV 484          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: A0A2B7Z549_9EURO (Uncharacterized protein n=1 Tax=Polytolypa hystricis UAMH7299 TaxID=1447883 RepID=A0A2B7Z549_9EURO)

HSP 1 Score: 215 bits (547), Expect = 1.520e-59
Identity = 109/253 (43.08%), Postives = 156/253 (61.66%), Query Frame = 1
Query:    4 PLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKL-DLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSRWFANL 759
            P DP++  D  A  R +EF + W+ADP+YFG YP  MR+++G+RLP FT+++  L+ GSNDF+G+NHY + Y          +N T             E  P D     +G L++ L D  G P G  TQ  WL   PEGFR LL+++S+RYG+P I VTENG +  GE+ LP+D+ + D+ R  ++  Y+ +M  S   DGV+VR++ AWS+LDNFEW++G+  RFG+TYVDY+  Q R PK S++   N 
Sbjct:  244 PWDPENPADVEACDRKIEFSISWFADPVYFGKYPDSMRKQLGDRLPEFTEEDAALVKGSNDFYGMNHYCANYI---------KNKTG------------EADPDD----FLGNLESLLEDKNGTPVGPETQSAWLQPHPEGFRKLLKWLSDRYGKPKIYVTENGTSLKGENDLPIDQLLNDEFRVNYFRGYIAAMADSYTLDGVNVRAYMAWSLLDNFEWAEGYETRFGVTYVDYEGGQKRHPKKSAKEIGNF 471          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: UPI001D80AB65 (Beta-glucosidase 1B n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D80AB65)

HSP 1 Score: 214 bits (545), Expect = 2.400e-59
Identity = 110/248 (44.35%), Postives = 153/248 (61.69%), Query Frame = 1
Query:    1 QPLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSR 744
            +P DP    D  A +R +EF +GW+ADPIY GDYP  MRQ++GERLP F+ DE  L+ GSNDF+G+NHYT+ Y  DI D                   +P  +  +G   ++ +L  K++  G   G  TQ  WL   P GFR L+ ++S+RYG+PII VTENG +  GE+ LP+++ + D  R E++  Y+  +  +   DGVDVR + AWS+LDNFEW++G+  RFG+TYVDY   Q R PK S+R
Sbjct:  235 EPWDPADPRDVQACQRKLEFTIGWFADPIYKGDYPASMRQQLGERLPEFSADEQALLHGSNDFYGMNHYTADYIRDIQD-------------------IPAEANSNG---NVEIL--KVNKAGDTIGPETQSVWLRPYPVGFRKLMRWISDRYGKPIIYVTENGTSLKGENDLPVEQLLEDDFRAEYFRNYITELAKAQNLDGVDVRGYMAWSLLDNFEWAEGYETRFGVTYVDYTGGQKRYPKKSAR 458          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: A0A4U6T6R7_SETVI (Uncharacterized protein n=5 Tax=Setaria TaxID=4554 RepID=A0A4U6T6R7_SETVI)

HSP 1 Score: 211 bits (538), Expect = 6.190e-59
Identity = 107/244 (43.85%), Postives = 145/244 (59.43%), Query Frame = 1
Query:   28 DKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSRWFANL 759
            D  AA+R  EFQLGW+ DP +FGDYP+ MR R+G+RLP FT DE  L+ GS DF G+NHYT+ Y  D          ++   + A GL L      DG M D G +    D++  P G      WL  VP G R ++ YV ERY  P + +TENGM  +    +P +EA++D +R +++  YL ++ ASI EDG DVR ++ WS+LDN+EW  G+  RFGL +VDY+    R PK S +WF  L
Sbjct:  184 DIEAAKRAQEFQLGWFVDPFFFGDYPESMRARIGDRLPKFTADEAALVKGSLDFVGINHYTTHYTMD----------SNTVSSTAMGLLL------DGTMADTGAVSVPFDIKN-PTGDRANSLWLYIVPWGMRKVMNYVKERYKSPPVYITENGMDDSNNPLIPKEEALKDSKRIKYHHDYLTNLAASIKEDGCDVRGYFVWSLLDNWEWIAGYTSRFGLYFVDYENNLERCPKSSVQWFKTL 410          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: J3NKB4_GAET3 (Beta-glucosidase A n=2 Tax=Magnaporthaceae TaxID=81093 RepID=J3NKB4_GAET3)

HSP 1 Score: 212 bits (539), Expect = 2.030e-58
Identity = 107/248 (43.15%), Postives = 152/248 (61.29%), Query Frame = 1
Query:    4 PLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKL-DLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSR 744
            P DP+   D  AA R +EF + W+ADP+YFG YPK M++++G+RLP FT +E  L+ GSNDF+G+NHYT+ Y       +PP +                          +G L+T      G   G  TQ  WL   P+GFR LL ++S+RYGRP I VTENG +  GE+ +PL+  ++D  R +++D Y+ +M A++ EDGVDVR + AWS++DNFEW++G+  RFG+T+VDY   Q R PK S+R
Sbjct:  241 PWDPEDPADVEAADRKIEFAISWFADPVYFGHYPKSMKKQLGDRLPTFTPEEEALVKGSNDFYGMNHYTANYIKH-KTGEPPADDF------------------------LGNLETLFWSKSGECIGEETQSFWLRPNPQGFRDLLNWLSKRYGRPKIYVTENGTSVKGENDMPLERILKDDFRVKYFDGYVKAMAAAVAEDGVDVRGYSAWSLMDNFEWAEGYETRFGVTFVDYKNGQKRYPKKSAR 463          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: F0XPY8_GROCL (Beta-galactosidase n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) TaxID=655863 RepID=F0XPY8_GROCL)

HSP 1 Score: 213 bits (541), Expect = 2.420e-58
Identity = 110/246 (44.72%), Postives = 150/246 (60.98%), Query Frame = 1
Query:    4 PLDPDSEEDKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSS 741
            P DP+  ED AAA+R +EF + W+ADPIYFG YP+ MR ++G+RLP+FT+ E  L+ GSNDF+G+NHYT+ Y    P S    +     +       LP +  G+ W+                 G  TQ  WL   P GFR LL ++S RYGRP + VTENG +  GE+SLP  E   D  R  ++D Y+++M  ++ +DGVDVR + AWS+LDNFEW++G+  RFG+TYVDY   Q R PK S+
Sbjct:  266 PWDPEDGEDVAAAQRKLEFSIAWFADPIYFGHYPESMRAQLGDRLPSFTEAERQLVQGSNDFYGMNHYTADYVRHRPGSPAVEDFVGHLET------LPVSRAGE-WI-----------------GPETQSTWLRPNPGGFRTLLGWISRRYGRPRVYVTENGTSIKGENSLPTAEVTDDVFRVRYFDEYVHAMAEAVRDDGVDVRGYMAWSLLDNFEWAEGYETRFGVTYVDYAGGQQRHPKKSA 487          
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Match: A0A835EXM9_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835EXM9_9POAL)

HSP 1 Score: 210 bits (535), Expect = 3.310e-58
Identity = 105/244 (43.03%), Postives = 144/244 (59.02%), Query Frame = 1
Query:   28 DKAAARRFVEFQLGWWADPIYFGDYPKVMRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGTSASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTAVPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEWYDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDAEQIRTPKDSSRWFANL 759
            D  AA+R  EFQLGW+ADP +FGDYP  MR+RV ERLP FT DE  L+ G+ DF G+NHYT++Y             T  +     G  L +T      + D G +    D  G+P G      WL  VP G R L+ YV ERY  P + +TENGM  +      +++A++D +R ++++ YL ++ ASI EDG DVR ++AWS+LDN+EW+ G+  RFGL +VDY     R PK+S +WF  L
Sbjct:  213 DIEAAKRAQEFQLGWFADPFFFGDYPATMRKRVAERLPKFTADESALVKGALDFMGINHYTTFY-------------TRNNNTNIIGKLLNDT------LADTGTVSLPFDKNGKPIGDRANSIWLYIVPSGMRKLMNYVKERYNSPTVYITENGMDDSNNPFTSINDALKDSKRIKYHNDYLTNLAASIKEDGCDVRGYFAWSLLDNWEWAAGYTSRFGLYFVDYRDNLKRYPKNSVQWFKTL 437          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11007.825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGS1_ECTSI7.340e-12770.43Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus si... [more]
A0A6H5JDJ5_9PHAE4.150e-12468.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A162IDG4_9PEZI3.990e-6246.15Beta-glucosidase n=1 Tax=Sporothrix insectorum RCE... [more]
A0A7S2FHU7_9STRA4.950e-6244.66Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2B7Z549_9EURO1.520e-5943.08Uncharacterized protein n=1 Tax=Polytolypa hystric... [more]
UPI001D80AB652.400e-5944.35Beta-glucosidase 1B n=1 Tax=Passalora fulva TaxID=... [more]
A0A4U6T6R7_SETVI6.190e-5943.85Uncharacterized protein n=5 Tax=Setaria TaxID=4554... [more]
J3NKB4_GAET32.030e-5843.15Beta-glucosidase A n=2 Tax=Magnaporthaceae TaxID=8... [more]
F0XPY8_GROCL2.420e-5844.72Beta-galactosidase n=1 Tax=Grosmannia clavigera (s... [more]
A0A835EXM9_9POAL3.310e-5843.03Uncharacterized protein n=1 Tax=Digitaria exilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11007contigH-elongata_contig11007:847..4352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue3.9e-87
Seed eggNOG ortholog2880.D8LGS1
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188,ko:K06699
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,ko03050,map00460,map00500,map00940,map01100,map01110,map03050
EggNOG free text desc.beta-glucosidase activity
EggNOG OGsCOG2723@1,KOG0626@2759
EC3.2.1.21
COG Functional cat.G
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-glucosidase, family GH1
Ec32 orthologEc-07_005240.1
Exons3
Model size1752
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11007.825.1prot_H-elongata_contig11007.825.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11007 1621..4241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.8848135-UTR-H-elongata_contig11007:846..16201622929627.8848135-UTR-H-elongata_contig11007:846..1620Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11007 847..1620 -
1691679097.2131164-UTR-H-elongata_contig11007:846..16201691679097.2131164-UTR-H-elongata_contig11007:846..1620Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11007 847..1620 -
1622929627.9337652-UTR-H-elongata_contig11007:4241..43521622929627.9337652-UTR-H-elongata_contig11007:4241..4352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11007 4242..4352 -
1691679097.249266-UTR-H-elongata_contig11007:4241..43521691679097.249266-UTR-H-elongata_contig11007:4241..4352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11007 4242..4352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.896009-CDS-H-elongata_contig11007:1620..20041622929627.896009-CDS-H-elongata_contig11007:1620..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11007 1621..2004 -
1691679097.2242477-CDS-H-elongata_contig11007:1620..20041691679097.2242477-CDS-H-elongata_contig11007:1620..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11007 1621..2004 -
1622929627.9068265-CDS-H-elongata_contig11007:2470..28491622929627.9068265-CDS-H-elongata_contig11007:2470..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11007 2471..2849 -
1691679097.2322066-CDS-H-elongata_contig11007:2470..28491691679097.2322066-CDS-H-elongata_contig11007:2470..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11007 2471..2849 -
1622929627.9190178-CDS-H-elongata_contig11007:4137..42411622929627.9190178-CDS-H-elongata_contig11007:4137..4241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11007 4138..4241 -
1691679097.2404134-CDS-H-elongata_contig11007:4137..42411691679097.2404134-CDS-H-elongata_contig11007:4137..4241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11007 4138..4241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11007.825.1

>prot_H-elongata_contig11007.825.1 ID=prot_H-elongata_contig11007.825.1|Name=mRNA_H-elongata_contig11007.825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MRQRVGERLPNFTDDELLLITGSNDFFGLNHYTSWYFTDIPDSDPPRNGT
SASKARAAGLNLPETSPGDGWMQDIGVLQTKLDLRGRPNGFATQVDWLTA
VPEGFRLLLEYVSERYGRPIIMVTENGMARAGESSLPLDEAVRDKERQEW
YDAYLYSMVASIVEDGVDVRSFYAWSILDNFEWSDGFAPRFGLTYVDYDA
EQIRTPKDSSRWFANLAKARRAIAAGHADIDGVSPTAGEGTGGKPHGTAR
SRFALWLALLWPTFILCALSIGRCRACRGHTEQLYDIL*
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mRNA from alignment at H-elongata_contig11007:847..4352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11007.825.1 ID=mRNA_H-elongata_contig11007.825.1|Name=mRNA_H-elongata_contig11007.825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3506bp|location=Sequence derived from alignment at H-elongata_contig11007:847..4352- (Himanthalia elongata Himel1 dioecious)
CAGCCGCTTGATCCTGATTCCGAAGAGGACAAGGCCGCGGCGAGGCGCTT CGTCGAGTTTCAGCTGGGTTGGTGGGCGGACCCGATCTATTTCGGGGACT ACCCCAAGGTCATGCGGCAAAGGGTCGGCGAGAGGCTTCCTAACTTTACC GACGATGAGCTGCTGCTAATCACAGGCAGCAATGATTTCTTCGGGCTAAA CCACTACACCTCTTGGTGAGTCGAAGGGGGGAACCCTGCATGGAAGATTG CCGAATACACCATTGTTCAGCTTGGTAGTACAGGACCAACTTCGTGCGAC GCGCCTGCGACCCCCCGTCCCCCAACCCAATTGTTCCTCCGTGCAGGTAC GGGGAGAATATGCCAAAATACCGCCCGCTGCACGATAATGGTTGGGCGCG CAGGGATTTTGTATCCCTCTCGCGAATACAGCAGGAGTTTGAGTTGATTG GTTGCGTTGTTTTCTCATATGTAAATTTCTCATGTCATCTCCACTTGCAG GTCTGCAGAAATATTAATCAAGGGTGAAGTAATTACGCAAGAGAATCAAC CATTTCGTAGCACATACTGTAAGAGTACATCATTAAAAGGATTGGATAAT AATCCCGAAAAGGAGACATTCGCAAGGAAAAGTACAGGTAAAGATAATAG AGAGTTAGCATTATAGGCAATTTTTGCGTGTAGAGAACATCATGAATGAA TATGATACTGATAATAAATTAAGGAGAAAGAGGGTCTAAAGATAAACGAA GGAATAATGTTAAATAAATAGTATATTATTTTAAAAACCTTGAACTCATT CCAACCCTCCGAACATCCACGCCTTCTTAGCACCATGAGAGGTGCAGTCC AGGGGACCAACTATCGAGTTGCATGTGCCAATGGATAGCGTAAAAAAGTT GAAGATCAAATTCAGGACTTTTAATGGAGACATTATAGGGTTTCCACGTG TCACAAACAATGCACGAAAAATATGCACTAAAGTGAACATGAACCTAAAC TAGTTCGCCACTGGCAGACTAGTTTACGTTCCTTTTCACTTTAGTGTATG TTTTTCATGCATTGTTTATAAAGCGTAGAAACCCTATATTGATCTCGGAA AATGTAAACATATATTGAGGAAAGTAGAAGACGAGGAATTCGAGGACAAG AACGAATGTGACTGCGGCTCGGATGAGTGTGAAGACCGTATCCACGCAGT AGTGGCAGAATACCAGTTATATGAAAAGGAAAGAGAAATATCCATGACGG AAAAAATTGAAGGTTGTGATAATGTATACTTTTGGAGAATGTGGCAGCCA GACGAAGTTGGTAGCTGCAATAATAAGGGATAACAAGTTGCCCGAGAAGG TAAACAATGATGTAGACTAGACAGCATATAAAAAACAATTTGGGGCTACG CCCCCCCCCCCCCCACCCACCAATCTCTCAGCCCCAAACGCCCGCGGCTG GGACAATCGTGATTTTGTGACGTCCCCACCCCCCCTCCTCACCCTTCCGC TAGGTACTTTACCGACATTCCCGACTCGGATCCGCCTCGAAACGGCACCT CGGCCTCGAAGGCGCGGGCGGCGGGCTTGAACCTACCCGAAACCTCGCCG GGGGACGGTTGGATGCAAGATATCGGCGTTCTTCAGACCAAGCTTGACCT TCGGGGGCGGCCCAACGGCTTTGCCACGCAGGTTGACTGGCTCACGGCGG TCCCCGAGGGATTTAGGCTTCTACTCGAATACGTGTCGGAGCGCTACGGG CGCCCGATTATCATGGTAACGGAGAACGGGATGGCCAGGGCCGGGGAGTC GTCGTTGCCGCTTGATGAGGCCGTCCGGGACAAGGAGAGACAGGAATGGT ACGACGCATACCTGTATTCGATGGTGGCCTCGGTGAGCGGTCGAGACTCA AGAACTGGTCAGGTCTTCAAATTCGTTCACCGTTTGAATGCATTGATACA CTTTGTCGACGAATACGATGTAGTGTAATTAGTTAGTGGAAGAGGGGTCA GGCACAGCGCCTTTGGTTCTTGTTTTCGCCAGTCCCTTTGTTTGTGGGTG TGTCGTGTCAGGCCGTCTTTTCCATTTGGCTGTCTCTCGTTCGCCTCCAC GACCTACTTCCCCCCTCTCCCTGACTTCATTTCCGTAGCTTGGATGAGAA AGGCGAATTTCTATTACTCACCGACGAGCTACTGATAGCGGTGATTGACC GCGTTCGACGCACGGGGGAGCTCGTCCTGCTCTTCCTTTTGAACCCACCG CCCAGAGAGCCTTCTCGGCAATCCCGTTCTCTGCACTCATCCATCCCCAA CAACCCTCCTCGGAAAACGTGAACGCCGACTACCCGATATCATCGCAGAT CGTGGAGGACGGAGTCGACGTAAGGAGCTTCTACGCGTGGTCCATCCTGG ACAACTTCGAGTGGTCCGACGGTTTCGCCCCCCGCTTCGGGCTAACCTAC GTTGACTACGACGCCGAGCAGATACGCACGCCGAAGGATTCTTCCAGGTG GTTTGCCAACTTGGCAAAAGCGCGTCGGGCGATCGCTGCCGGGCACGCCG ACATCGACGGAGTCTCCCCGACGGCAGGGGAAGGGACTGGTGGGAAGCCT CACGGAACGGCACGCAGTCGGTTTGCATTATGGTTAGCGTTGCTGTGGCC AACTTTTATCTTGTGTGCGTTGTCGATCGGAAGATGCCGTGCATGTAGGG GACACACAGAGCAATTATACGATATATTGTGATTAACGGATAAGCTTTCT AGGGTTTAGGTGGCTTGCCCCTAGTTGGTCGAAGTACTGAGGTCTTGACT GTCAACTGTTTGTTACTTGTACTTATTATTTGTTTTTTTCTGTCTGCTCT TTCTTTTGCATTTTTTTGCATTTTTTTCTTTTTCGCTATGCAGTTTGCTG CGGTTGTTTTCTTTTGTTGTTGCTGATGCTCTTCATGAAAAGCAGTCAAC TGTTCGTTCCACTAATCTTGTGTGTCGTCCGCTTCTGTTTTAAGGTGTTG GCAGGAACGCAATGTACGACTCCTGTGACACCTTGTTTTTTGCGTATTCC ATCGTGCAAAAACTGCGAAACTGAGCTTGCCCATTTGTCAACGAGCTGCA TCTCAGGCGCGAGTCGTTCCTAGTTGGTTTGATTGCACAGTTAACTTTTA AAGTTTGTACTGGTAGAGGTTGTGGGCATCTCTTGGGTACCATTTGGGTC CCGATATCTCTTCTTGTGGTTTGGTTTTGCTGTGTGGACCAATTTATCCT TGAGAGAGCAACATACACGGTGGATATTCGAGTGCTCGACCATTTCGTGG ATACAATAGACGTGACCGTTACGCGCGCCGAACGGTGCACGAGGTGAGAG TCTTGTCTTGGCTTGAGGCGCACGAGGTTCACCTAAAAATCGTAGAGATT TCTCCAATCGCGAGGAAAAACGAGTAGACATAATTGATGTTGATGTTAAG GGGTCTCTTTTGACTACCCATACTATATTTTACTAATAAAAAGGTCAGAA TATTCA
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Coding sequence (CDS) from alignment at H-elongata_contig11007:847..4352-

>mRNA_H-elongata_contig11007.825.1 ID=mRNA_H-elongata_contig11007.825.1|Name=mRNA_H-elongata_contig11007.825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig11007:847..4352- (Himanthalia elongata Himel1 dioecious)
ATGCGGCAAAGGGTCGGCGAGAGGCTTCCTAACTTTACCGACGATGAGCT
GCTGCTAATCACAGGCAGCAATGATTTCTTCGGGCTAAACCACTACACCT
CTTGATGCGGCAAAGGGTCGGCGAGAGGCTTCCTAACTTTACCGACGATG
AGCTGCTGCTAATCACAGGCAGCAATGATTTCTTCGGGCTAAACCACTAC
ACCTCTTGGTACTTTACCGACATTCCCGACTCGGATCCGCCTCGAAACGG
CACCTCGGCCTCGAAGGCGCGGGCGGCGGGCTTGAACCTACCCGAAACCT
CGCCGGGGGACGGTTGGATGCAAGATATCGGCGTTCTTCAGACCAAGCTT
GACCTTCGGGGGCGGCCCAACGGCTTTGCCACGCAGGTTGACTGGCTCAC
GGCGGTCCCCGAGGGATTTAGGCTTCTACTCGAATACGTGTCGGAGCGCT
ACGGGCGCCCGATTATCATGGTAACGGAGAACGGGATGGCCAGGGCCGGG
GAGTCGTCGTTGCCGCTTGATGAGGCCGTCCGGGACAAGGAGAGACAGGA
ATGGTACGACGCATACCTGTATTCGATGGTGGCCTCGGTACTTTACCGAC
ATTCCCGACTCGGATCCGCCTCGAAACGGCACCTCGGCCTCGAAGGCGCG
GGCGGCGGGCTTGAACCTACCCGAAACCTCGCCGGGGGACGGTTGGATGC
AAGATATCGGCGTTCTTCAGACCAAGCTTGACCTTCGGGGGCGGCCCAAC
GGCTTTGCCACGCAGGTTGACTGGCTCACGGCGGTCCCCGAGGGATTTAG
GCTTCTACTCGAATACGTGTCGGAGCGCTACGGGCGCCCGATTATCATGG
TAACGGAGAACGGGATGGCCAGGGCCGGGGAGTCGTCGTTGCCGCTTGAT
GAGGCCGTCCGGGACAAGGAGAGACAGGAATGGTACGACGCATACCTGTA
TTCGATGGTGGCCTCGATCGTGGAGGACGGAGTCGACGTAAGGAGCTTCT
ACGCGTGGTCCATCCTGGACAACTTCGAGTGGTCCGACGGTTTCGCCCCC
CGCTTCGGGCTAACCTACGTTGACTACGACGCCGAGCAGATACGCACGCC
GAAGGATTCTTCCAGGTGGTTTGCCAACTTGGCAAAAGCGCGTCGGGCGA
TCGCTGCCGGGCACGCCGACATCGACGGAGTCTCCCCGACGGCAGGGGAA
GGGACTGGTGGGAAGCCTCACGGAACGGCACGCAGTCGGTTTGCATTATG
GTTAGCGTTGCTGTGGCCAACTTTTATCTTGTGTGCGTTGTCGATCGGAA
GATGCCGTGCATGTAGGGGACACACAGAGCAATTATACGATATATTGTGA
ATCGTGGAGGACGGAGTCGACGTAAGGAGCTTCTACGCGTGGTCCATCCT
GGACAACTTCGAGTGGTCCGACGGTTTCGCCCCCCGCTTCGGGCTAACCT
ACGTTGACTACGACGCCGAGCAGATACGCACGCCGAAGGATTCTTCCAGG
TGGTTTGCCAACTTGGCAAAAGCGCGTCGGGCGATCGCTGCCGGGCACGC
CGACATCGACGGAGTCTCCCCGACGGCAGGGGAAGGGACTGGTGGGAAGC
CTCACGGAACGGCACGCAGTCGGTTTGCATTATGGTTAGCGTTGCTGTGG
CCAACTTTTATCTTGTGTGCGTTGTCGATCGGAAGATGCCGTGCATGTAG
GGGACACACAGAGCAATTATACGATATATTGTGA
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