mRNA_H-elongata_contig110034.820.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110034.820.1
Unique NamemRNA_H-elongata_contig110034.820.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110034.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110034contigH-elongata_contig110034:752..2047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size278
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110034.820.1prot_H-elongata_contig110034.820.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110034 1340..2047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.3610253-UTR-H-elongata_contig110034:751..8221622929627.3610253-UTR-H-elongata_contig110034:751..822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110034 752..822 +
1691679096.9571242-UTR-H-elongata_contig110034:751..8221691679096.9571242-UTR-H-elongata_contig110034:751..822Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110034 752..822 +
1622929627.3751132-UTR-H-elongata_contig110034:1294..13391622929627.3751132-UTR-H-elongata_contig110034:1294..1339Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110034 1295..1339 +
1691679096.966453-UTR-H-elongata_contig110034:1294..13391691679096.966453-UTR-H-elongata_contig110034:1294..1339Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110034 1295..1339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.3865764-CDS-H-elongata_contig110034:1339..13951622929627.3865764-CDS-H-elongata_contig110034:1339..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110034 1340..1395 +
1691679096.975449-CDS-H-elongata_contig110034:1339..13951691679096.975449-CDS-H-elongata_contig110034:1339..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110034 1340..1395 +
1622929627.3971272-CDS-H-elongata_contig110034:1941..20471622929627.3971272-CDS-H-elongata_contig110034:1941..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110034 1942..2047 +
1691679096.9831412-CDS-H-elongata_contig110034:1941..20471691679096.9831412-CDS-H-elongata_contig110034:1941..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110034 1942..2047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110034.820.1

>prot_H-elongata_contig110034.820.1 ID=prot_H-elongata_contig110034.820.1|Name=mRNA_H-elongata_contig110034.820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MHQQQQSDGEYFDLNVLKGAVSFNTKPFKHRALVWIGFKKVLLFPFCWRW
WLPR
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mRNA from alignment at H-elongata_contig110034:752..2047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110034.820.1 ID=mRNA_H-elongata_contig110034.820.1|Name=mRNA_H-elongata_contig110034.820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1296bp|location=Sequence derived from alignment at H-elongata_contig110034:752..2047+ (Himanthalia elongata Himel1 dioecious)
CAGACCCTCTCATCACGATGAGAGATGAAGTCCAGGAGGCCAACTACGGA
CATCAGTAACTATATCGCCAGGTTCGAGCGGCTGTTTCTAGTACTGTGAG
AAACATAAAAAAAAAACACGAAGTGTTGTTCCTATACTATACTTGAAAGC
AGTCGTTTCTCTCAGATCTAGAATTCTGTCGCGGGATGTAGAACTCAGAA
AATTGCCGACACACGGACTAGTATATACACAACAGACAGCAGGAGACAGC
ACGCGACGAGGATCAGGATTACAGTAGTAGTAGTTGCGTGCATGGTTTTC
ATTATCCAACATCACTCATTCATACCAAGCCTTGTTTGGCGATCATCACC
AGCAGCAGGGTTAGGCTTTTTTTGAGTGTTCGTTCGTGAAAGAGCTAGGA
AAGAAGAGATGTCGACCATGTTCGCCACACGGGGCCCTTCGAAGCTACAG
GAGGACGACCAAGAGCTTATTGATCAGGCCCAGTTAAACCCACCATCGCT
ATCGAATTTGACGCCGCTGCCGCTGCCGCCGTCGCCACAGCAGAAGGACG
AGCAGGGAAAACATTCGCGACGCCGGCAGCGCCGGATCATGCACCAACAA
CAGCAGTCGGACGGGGAGTACTTCGATCTAAATGTACTCAAGGGGTGAGG
CTATTAACACTGCAGATGATAACTCTAAAAGCTTATTATGATTATTGTAG
AGCACTACTACTGAGTATATTCCATACTCGCTCGTAGGTTGAACAAACGA
AAATATTGTACGTATTACCTTCACAAAATTGACTTCTGGAAATTCGTCGG
AGAGGCTACGGTAATTAATACCTCTTCGCTACAACTTGACGCCCGACCTT
GAGAGTCAACTTGATGCCTGGGCTTGATGCGCGAGCTATCGGTGGGGTGA
CCGATCCAGGGTCCTGAAGAGAAGAATATAACACAAGAGCTAGGTCTGCT
GCGTCCTATACACCTTGAGCGAGATACATCGCCCACAGAACGCATGTAAA
GTCTTTCAAATAAAAAATATTAGTACGGTAGTTCTACTATGTGATGTTAA
TCTGCGTCAATTTATTTTCCTATAACCACCATGGAAAAAAAATGTAAAAA
AAAAGCGCAGCGGCATCGAGGAGGTCTGCAGTTTCGACATATATCTCCTT
ATGATCTCATAATAATGTGGTCATGCACCGGCGCACGCAGGGCAGTCTCC
TTCAACACGAAGCCTTTTAAGCACCGGGCGCTGGTCTGGATCGGTTTCAA
GAAGGTCCTCCTCTTCCCCTTTTGCTGGAGATGGTGGCTCCCACGG
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Coding sequence (CDS) from alignment at H-elongata_contig110034:752..2047+

>mRNA_H-elongata_contig110034.820.1 ID=mRNA_H-elongata_contig110034.820.1|Name=mRNA_H-elongata_contig110034.820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig110034:752..2047+ (Himanthalia elongata Himel1 dioecious)
ATGCACCAACAACAGCAGTCGGACGGGGAGTACTTCGATCTAAATGTACT
CAAGGGATGCACCAACAACAGCAGTCGGACGGGGAGTACTTCGATCTAAA
TGTACTCAAGGGGGCAGTCTCCTTCAACACGAAGCCTTTTAAGCACCGGG
CGCTGGTCTGGATCGGTTTCAAGAAGGTCCTCCTCTTCCCCTTTTGCTGG
AGATGGTGGCTCCCACGGGGCAGTCTCCTTCAACACGAAGCCTTTTAAGC
ACCGGGCGCTGGTCTGGATCGGTTTCAAGAAGGTCCTCCTCTTCCCCTTT
TGCTGGAGATGGTGGCTCCCACGG
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