mRNA_H-elongata_contig110028.819.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110028.819.1
Unique NamemRNA_H-elongata_contig110028.819.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110028.819.1 vs. uniprot
Match: A0A6H5KJ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ39_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.820e-18
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:    2 DTRCTEEMYLEVLMFPGVVSSGPAGGICALGKFADGRQEYYRVTSCTTDEETDKVP-VGPTPSPTPLPPIAYQPVESDSAPVDYRGDGDDEDL 277
            D+ C+ +  LE++MF   V +   GG+CALG F DG +EYYRV +CTT+EET+K P +GPT               + +APVDYRGDGDDEDL
Sbjct:  228 DSTCSGDTRLEMIMFARAVDNDTNGGMCALGHFEDGHEEYYRVKACTTEEETEKNPDIGPTXXXXXXXXXXXXDSHNAAAPVDYRGDGDDEDL 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110028.819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ39_9PHAE1.820e-1849.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110028contigH-elongata_contig110028:255..1119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003710.1
Exons3
Model size277
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110028.819.1prot_H-elongata_contig110028.819.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110028 255..1097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.263051-CDS-H-elongata_contig110028:254..3151622929627.263051-CDS-H-elongata_contig110028:254..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110028 255..315 -
1691679096.9260814-CDS-H-elongata_contig110028:254..3151691679096.9260814-CDS-H-elongata_contig110028:254..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110028 255..315 -
1622929627.2806652-CDS-H-elongata_contig110028:710..8001622929627.2806652-CDS-H-elongata_contig110028:710..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110028 711..800 -
1691679096.9333966-CDS-H-elongata_contig110028:710..8001691679096.9333966-CDS-H-elongata_contig110028:710..800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110028 711..800 -
1622929627.2956078-CDS-H-elongata_contig110028:993..10971622929627.2956078-CDS-H-elongata_contig110028:993..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110028 994..1097 -
1691679096.9406247-CDS-H-elongata_contig110028:993..10971691679096.9406247-CDS-H-elongata_contig110028:993..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110028 994..1097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.3159835-UTR-H-elongata_contig110028:1097..11191622929627.3159835-UTR-H-elongata_contig110028:1097..1119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110028 1098..1119 -
1691679096.948382-UTR-H-elongata_contig110028:1097..11191691679096.948382-UTR-H-elongata_contig110028:1097..1119Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110028 1098..1119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110028.819.1

>prot_H-elongata_contig110028.819.1 ID=prot_H-elongata_contig110028.819.1|Name=mRNA_H-elongata_contig110028.819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MYLEVLMFPGVVSSGPAGGICALGKFADGRQEYYRVTSCTTDEETDKVPV
GPTPSPTPLPPIAYQPVESDSAPVDYRGDGDDEDL
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mRNA from alignment at H-elongata_contig110028:255..1119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110028.819.1 ID=mRNA_H-elongata_contig110028.819.1|Name=mRNA_H-elongata_contig110028.819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig110028:255..1119- (Himanthalia elongata Himel1 dioecious)
TGACACGCGATGTACCGAGGAGATGTACCTCGAGGTGCTAATGTTCCCGG
GGGTTGTCAGCTCTGGTCCGGCGGGAGGCATCTGTGCGCTGGGGAAGTTC
GCCGATGGTCGCCAAGAGTATTACCGGTGTGTTATTTTTCTATGTAGTCT
GTATATATATTTTCTATGTATTCTTATTTCAATTTCTTTTCTCGAGACCC
AACAACGTACCGTTTTATATTACGGGAAAAGGTCACGTCGGATAATTTCA
ATTTTACCCTGTTGAAGGTGTTTTTCTGCGTCAATTCCTGTTTTCCCTAT
ATTTTCCTTCAAAATGCAGGGTGACTTCGTGCACGACTGACGAGGAAACT
GATAAAGTGCCGGTGGGACCAACCCCATCACCTACGCCTCTGCCGCCCAT
TGCCTACCAGTGAGTTAGTTCCTTGTTACCCAGAAAATATACCCGACGTT
TTCCCTTCTATAAAACCATTAGTTTTTTTTTTGCGGGCGAGTCATTTGTT
AGCCGGAGGAAAGGTTTCGGATATATTTGTATTTTAATATTTTCAGTCAA
CCTTTGCTAGAATGAGGTGATTTAAACATTGCACGCGTTGATGCCTTTCG
CCACACTTATTAATGTATGTTTTTTTTTTCAGCTATCAAAGTGCCCAAAA
CTATTTTTAATGCCAATTTCAGATTTCACTCCCTAAATTATTTTGATGAT
TCGCTTCCTTAACGTCGCCATGTCCTGTTTATCAATCGAGAATTGTGTTG
ACTAATGCAAGCGTTTATTGATGTTGTGTTGTTGTACCTTTTCTTCTGTT
TTAGGCCCGTTGAATCGGATTCTGCACCCGTCGACTACCGTGGCGATGGA
GACGATGAAGACCTA
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Coding sequence (CDS) from alignment at H-elongata_contig110028:255..1119-

>mRNA_H-elongata_contig110028.819.1 ID=mRNA_H-elongata_contig110028.819.1|Name=mRNA_H-elongata_contig110028.819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig110028:255..1119- (Himanthalia elongata Himel1 dioecious)
ATGTACCTCGAGGTGCTAATGTTCCCGGGGGTTGTCAGCTCTGGTCCGGC
GGGAGGCATCTGTGCGCTGGGGAAGTTCGCCGATGGTCGCCAAGAGTATT
ACCGATGTACCTCGAGGTGCTAATGTTCCCGGGGGTTGTCAGCTCTGGTC
CGGCGGGAGGCATCTGTGCGCTGGGGAAGTTCGCCGATGGTCGCCAAGAG
TATTACCGGGTGACTTCGTGCACGACTGACGAGGAAACTGATAAAGTGCC
GGTGGGACCAACCCCATCACCTACGCCTCTGCCGCCCATTGCCTACCAGG
TGACTTCGTGCACGACTGACGAGGAAACTGATAAAGTGCCGGTGGGACCA
ACCCCATCACCTACGCCTCTGCCGCCCATTGCCTACCAGCCCGTTGAATC
GGATTCTGCACCCGTCGACTACCGTGGCGATGGAGACGATGAAGACCTAG
CCCGTTGAATCGGATTCTGCACCCGTCGACTACCGTGGCGATGGAGACGA
TGAAGACCTA
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