mRNA_H-elongata_contig110020.817.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110020.817.1
Unique NamemRNA_H-elongata_contig110020.817.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: D8LCW7_ECTSI (Zinc transporter zupT, Zinc transporter ZIP, metal ion transmembrane transporter activity n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCW7_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 1.080e-101
Identity = 209/361 (57.89%), Postives = 241/361 (66.76%), Query Frame = 1
Query:    1 KADAYLYATLSLFGGILFYKGLDYGVHLLEGND-GGHNIDIDLYDLDESSSGGGITVA----------KRNKAA----GVDGADPSSEAMAPHGMVPKHDVVVELSS-GSNLRPSADLHTMHLRVAGKVQPPQQXXXXXXGHVHQEGEELASASLTPKNKSTT------GMDLSAIEEAEGGGR-------GGVDEGDANAEAV----DKQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLFLY 984
            +AD+YLYATLSLFGG+L YKG+D  VHLLEG     H++DI LYDLD SS     +            KR K+A    G +  +  ++   P      H+VVVEL+S GS +RPS DL+T+ L +AGKVQ  Q              E   S      NK+        G  +  +EEA             G  + +    AV    +++LVRMGL+TA+AIGIHNFPEGLATFVAALSDPSV    XXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKD M+ELVYG+LFGVVAGMM+NI+IHELIPTAVRYDP DKVTTNSII GMAIMA SLTLFLY
Sbjct:   80 EADSYLYATLSLFGGVLLYKGIDLVVHLLEGGPVRDHHVDISLYDLDGSSGSSESSPRTAPAATADKKKRKKSAPQLGGANSGNNPNDGREP--FPADHNVVVELASRGSAVRPSPDLNTLQLSMAGKVQAQQPSPV---------SELTPSGGGNSNNKTGVVGFMEEGSGVDQMEEAPSAXXXXXXXAPSGTVQSERGTPAVADGDNEKLVRMGLLTAVAIGIHNFPEGLATFVAALSDPSVXXXXXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDIMSELVYGLLFGVVAGMMVNITIHELIPTAVRYDPTDKVTTNSIIAGMAIMALSLTLFLY 429          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: A0A6V2QEW8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QEW8_HETAK)

HSP 1 Score: 218 bits (554), Expect = 7.250e-65
Identity = 155/334 (46.41%), Postives = 193/334 (57.78%), Query Frame = 1
Query:    4 ADAYLYATLSLFGGILFYKGLDYGVHLLEGNDGGHNIDI-------DLYDLDESSSGGGITVAKRNKAAGVDGADPSSEAMAPHGMVPKHDVVVELSSGSNLRPSADLHTMHLRVAGKVQPPQQXXXXXXGHVHQEGEELASASLTPKNKSTTGMDLSAIEEAEGGGRGGVDEGDANAEAVDKQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLFLY 984
            ++AYLYA+LS FGGI F K LD  VH L   D  H+ D+          D+++S +    TV K +K          + A  P  +                  S DL T++L  AGK            G     G+      LT    S T +D  A             +G  + E  D +LVRMG++TALAIG+HNFPEGLATFVA L DPSVG ALXXXXXXXXXXXXXCVAIP+YYATG+R KAFGWAL+SG+SEPIGAGLGWL+L    ++++YG      AGMM+NI +HELIPTA R+DP D + +N ++ GMAIMA SL LF Y
Sbjct:   76 SNAYLYASLSFFGGIAFGKTLDVLVHKL---DKSHSHDLPDRPEEASTTDIEDSQTSYDQTVDKPSK----------TNATLPQAVT-----------------SPDLTTLNLDKAGKT-------VAGAGLGSPAGKGSRRGMLTTAG-SATSLDTEAT------------DGTHSKEPKDARLVRMGVLTALAIGLHNFPEGLATFVATLDDPSVGGALXXXXXXXXXXXXXCVAIPIYYATGSRAKAFGWALISGISEPIGAGLGWLVLSAVFSDVLYGXXXXXXAGMMVNICLHELIPTAHRHDPKDTIVSNCLVAGMAIMALSLVLFQY 359          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: A0A6H5JKG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG5_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 6.670e-64
Identity = 156/327 (47.71%), Postives = 186/327 (56.88%), Query Frame = 1
Query:    4 ADAYLYATLSLFGGILFYKGLDYGVHLLEGND-GGHNIDIDLYDLDESSSGGGITVAKRNKAAGVDGADPSSEAMAPHGMVPKHDVVVELSSGSNLRPSADLHTMHLRVAGKVQPPQQXXXXXXGHVHQEGEELASASLTPKNKSTTGMDLSAIEEAEGGGRGGVDEGDANAEAVDK-QLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLF 978
            ADAYLYATLSLFGG+L Y+G+++ V LL G   G HN++ D YDL+ SSS    TV                                  +SG + R S                           + +EG         P+ + TTG                     ANA + D+ +LV MGL+TA+AIGIHNFP+GLATFV++L+DPSV    XXXXXXXXXXXX CVA+PVYY TG+R KAFGWALLSG +EPIGA LGWLILKD M+ELVYGIL          + IH+LIPTAVR+DPADKVTTNSI  GMAIMA SL LF
Sbjct:   81 ADAYLYATLSLFGGMLCYRGIEFVVQLLGGGAFGEHNLEFDQYDLNNSSSN---TVT---------------------------------ASGDSSRNST--------------------------IKREGPRDVEQ---PQPQETTG--------------------GANAVSGDEAKLVHMGLLTAVAIGIHNFPDGLATFVSSLADPSVXXXXXXXXXXXXXXXXMCVAMPVYYGTGSRCKAFGWALLSGATEPIGAALGWLILKDVMSELVYGILXXXXXXXXXXVVIHDLIPTAVRFDPADKVTTNSISAGMAIMALSLVLF 322          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: A0A8J2SXP3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXP3_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.010e-60
Identity = 113/153 (73.86%), Postives = 133/153 (86.93%), Query Frame = 1
Query:  526 DKQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLFLY 984
            DK+L  MG+MTALAIGIHNFPEGLATFVA L DP+VGA+ XXXXXXXXXXXXXCV+IP+Y+ATG+RWKAF WALLSGVSE +GA LGW +LKD  + L+YGI+FG+VAGMMI I ++ELIPTA RYDP D+V T SI+ GMA+MAASL LF+Y
Sbjct:  168 DKRLESMGMMTALAIGIHNFPEGLATFVATLDDPAVGASXXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEIVGALLGWALLKDHFDNLLYGIVFGMVAGMMIMICLNELIPTAHRYDPRDRVVTKSIVAGMAVMAASLCLFVY 320          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: A0A6U3SFV9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SFV9_9STRA)

HSP 1 Score: 206 bits (523), Expect = 5.730e-60
Identity = 149/341 (43.70%), Postives = 200/341 (58.65%), Query Frame = 1
Query:    1 KADAYLYATLSLFGGILFYKGLDYGVHLLEGNDGGHN---IDIDLYDLDESSSGGGITVAKRNKAAGVDGADPSSEAMAPHGMVPKHDVVVELSSGSNLRPSADLHTMHLRVAGKVQPPQQXXXXXXGHVHQEGEELASASLTPKNKSTTGMDLSAIEEAEGGGRGGVDEGDANAE-AVD-----------KQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLF 978
            + DA++YATL  FGG++    +D+ V L  G    HN    ++   DL ++        A++N   G++ A    +  APH +            G +  P  +L   H +   +V+             H++ + +AS   TP +++  G D  ++  A+    G  DE D   + AVD           K+LV+MG+ TA+AIG+HNFPEGLATFVAAL DP VG  LXXXXXXXXXXXXXCVA+P+YYATGNR KAFGWAL+SG+SEP+ A LGW IL +S ++ +Y +LFG+V GMM+ IS  EL+PTA RYDP D V T S I GM IMA SL LF
Sbjct:   77 EEDAHIYATLCFFGGVIIMLLIDFLVRLFSGEHHNHNHPSSNVPQQDLSKAE-------AEKN---GLEDASEEEQFAAPHCV------------GCSDDPVGELREWHEKAEAEVRD------------HKQNQTVASVE-TPGDQNAAG-DAGSLS-ADSASDGFKDEIDGRTKLAVDGFKGLESSHEHKKLVKMGISTAIAIGLHNFPEGLATFVAALDDPRVGGVLXXXXXXXXXXXXXCVALPIYYATGNRTKAFGWALISGLSEPLAALLGWAILANSFSDTLYAVLFGIVGGMMVIISCKELLPTAHRYDPEDTVVTYSFIGGMVIMALSLVLF 380          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: F0Y6B2_AURAN (Cilia- and flagella-associated protein 206 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6B2_AURAN)

HSP 1 Score: 213 bits (542), Expect = 1.340e-58
Identity = 120/160 (75.00%), Postives = 136/160 (85.00%), Query Frame = 1
Query:  499 EGDANAEAVDKQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLF 978
            E +A   A DK L RMG+MTALAIGIHNFPEGLATFVA L DP+VG ALXXXXXXXXXXXXXCV+IP+Y+ATG+RWKAF WALLSGVSEP+GA LGWL+LKD  NEL+YGI+FG+VAGMM+ I ++ELIPTA RYDP DKV T SI  GM +MAASL LF
Sbjct:  184 EVEAPEAAGDKPLERMGVMTALAIGIHNFPEGLATFVATLDDPAVGGALXXXXXXXXXXXXXCVSIPIYFATGDRWKAFRWALLSGVSEPVGALLGWLLLKDHFNELLYGIVFGMVAGMMVMICLNELIPTAHRYDPQDKVVTKSITAGMVVMAASLCLF 343          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: B7G5W7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5W7_PHATC)

HSP 1 Score: 202 bits (514), Expect = 1.540e-58
Identity = 152/326 (46.63%), Postives = 189/326 (57.98%), Query Frame = 1
Query:   10 AYLYATLSLFGGILFYKGLDYGVHLLEGNDGGHNIDIDLYDLDESSSGGGITVAKRNKAAGVDGADPSSEAMAPHGMVPKHDVVVELSSGSNLRPSADLHTMHLRVAGKVQPPQQXXXXXXGHVHQEGEELASASLTPKNKSTTGMDLSAIEEAEGGGRGGVDEGDANAEAVD--KQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLFL 981
            AY+YATL  FGG++    L+Y V  L G         D +  D  +       AK  +   VD  DPS    APH   P  D         +  P+ D   +   +A +++  ++      G +H E +  A       +   T    +    ++    G     DA AE  D  K+L+RM L TALAIGIHNFPEGLATFVAAL DP VGA L XXXXXXXXXXXXCVA+PVYYATGNRWKAFGWA+LSG+SEP+ A LGW +L  S ++ +YG+LFG+VAGMM+ IS  EL+PTA RYDP D V T + I GM IMA SL LFL
Sbjct:   85 AYIYATLCFFGGVVLMVALNYMVTWLLGXXXXXXXXXD-FPKDHITH-----AAKTQEITNVD--DPS----APH---PADDNAPLACPCCSDDPAGDWQAVQ-DMASEIEAVEKDHKVWDG-IH-EPDSRARPDSADSSPHATPFSATTHHASD---YGDDSSHDALAEPTDESKKLLRMSLNTALAIGIHNFPEGLATFVAALGDPKVGAVLAXXXXXXXXXXXXCVAMPVYYATGNRWKAFGWAMLSGMSEPVAALLGWAVLASSFSDTLYGLLFGMVAGMMVVISTRELLPTAHRYDPEDCVVTYAFISGMCIMALSLVLFL 389          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: A0A7S3VFQ6_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VFQ6_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.660e-58
Identity = 145/330 (43.94%), Postives = 188/330 (56.97%), Query Frame = 1
Query:   10 AYLYATLSLFGGILFYKGLDYGVHLLEGNDG---GHNIDIDLYDLDESSSGGGITVAKRNKAAGVDGADPSSEAMAPHGM--VPKHDVVVELSSGSNLRPSADLHTMHLRVAGKVQPPQQXXXXXXGHVHQEGEELASASLTPKNKSTTGMDLSAIEEAEGGGRGG--VDEGDANAEAVDKQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLF 978
            A LYATLS F GIL    +D  V+L+    G   GH  +                 +  NK       D S+E  +PHG     K +VV+      NL P+ DL     +   + +  +         +   G  L  AS          +D   + E  G  +     DE     E  +K+LVRMG+ TA+AI +HNFPEGLATFVA L DP +GA LXXXXXXXXXXXX CVA+P+YYATGNR KAF W  LSG+SEP+GA LGWL+L +S ++ +YG++FG+VAGMM+ IS+ EL+PTA RYDP D V TNSII GMA+++ SL L+
Sbjct:   46 ANLYATLSFFLGILCMVVIDKVVNLISSKHGDVHGHGPE-----------------SLNNK-------DNSNEIESPHGHGEEEKEEVVIPPCFTCNLDPAGDLKEWQEKA--EAEEVRNKTLEGGSTLAGNGASLVGASDNGSENVPAPIDEERVVEVSGVPKVASMTDE-----EIENKKLVRMGMQTAVAIALHNFPEGLATFVAVLEDPKIGAILXXXXXXXXXXXXFCVALPIYYATGNRKKAFWWGALSGMSEPVGALLGWLVLANSFSDAIYGLMFGLVAGMMVMISLKELLPTAYRYDPGDTVVTNSIIAGMAVISLSLVLY 344          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: A0A7S2RNM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNM0_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.320e-58
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 1
Query:  529 KQLVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLF 978
            ++LVRMGLMTALAIGIHN PEGLATFV  L DP+VG  LXXXXXXXXXXXXXCVAIP+YYAT +RW+AF WA +SG+SEPIGAGLGW +L   +++ VYGI+FG+V GMM+NI IHEL+PTA RYDP D+ TT S I GMA+MA SL LF
Sbjct:  219 QRLVRMGLMTALAIGIHNLPEGLATFVGTLDDPAVGVGLXXXXXXXXXXXXXCVAIPIYYATHDRWQAFKWAFISGISEPIGAGLGWAVLHSIIDDRVYGIVFGLVGGMMVNICIHELLPTAFRYDPGDRFTTKSFIAGMALMALSLILF 368          
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Match: A0A7S2BFN7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFN7_9STRA)

HSP 1 Score: 198 bits (503), Expect = 5.400e-57
Identity = 118/203 (58.13%), Postives = 149/203 (73.40%), Query Frame = 1
Query:  394 EELASASLTPKNK------STTGMDLSAIEEAEGGGRGGVDEGDANAEAVDKQ--LVRMGLMTALAIGIHNFPEGLATFVAALSDPSVGAALXXXXXXXXXXXXXCVAIPVYYATGNRWKAFGWALLSGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVRYDPADKVTTNSIIVGMAIMAASLTLF 978
            EE+A A   PK+       ST+G   S+    +  G+ G    +  A+  D+Q  LV+MG+MTALAIG+HNFPEGLATFV  L DP+VG   XXXXXXXXXXXXXCV+IP+YYAT NRW+AF WA +SG+SEPIGA LGW+ L + M++  Y ++FG+V+GMM+NI IHELIPTAV+YDP DKVT+ S+I GM +MA SL LF
Sbjct:  182 EEVAEAGGAPKDAGSAITVSTSGSPNSS----DLSGKEGALPMEVGAKDDDRQKALVKMGMMTALAIGLHNFPEGLATFVGTLDDPTVGXXXXXXXXXXXXXXXXCVSIPIYYATKNRWQAFKWAFISGISEPIGAALGWIFLANCMSDSAYAVIFGLVSGMMVNICIHELIPTAVKYDPEDKVTSKSVIAGMLVMALSLVLF 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110020.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCW7_ECTSI1.080e-10157.89Zinc transporter zupT, Zinc transporter ZIP, metal... [more]
A0A6V2QEW8_HETAK7.250e-6546.41Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6H5JKG5_9PHAE6.670e-6447.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SXP3_9STRA3.010e-6073.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6U3SFV9_9STRA5.730e-6043.70Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
F0Y6B2_AURAN1.340e-5875.00Cilia- and flagella-associated protein 206 n=1 Tax... [more]
B7G5W7_PHATC1.540e-5846.63Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3VFQ6_9STRA2.660e-5843.94Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2RNM0_9STRA7.320e-5872.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BFN7_9STRA5.400e-5758.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110020contigH-elongata_contig110020:651..1637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.5
Seed ortholog evalue3.6e-84
Seed eggNOG ortholog2880.D8LCW7
KEGG rclassRC00003,RC00392
KEGG koko:K00545,ko:K07238
KEGG TC2.A.5.5
KEGG ReactionR02534,R02920,R03304,R04301,R04762,R04764,R04881,R04887
KEGG Pathwayko00140,ko00350,ko00965,ko01100,ko04728,map00140,map00350,map00965,map01100,map04728
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsCOG0428@1,KOG2474@2759
EC2.1.1.6
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size987
Cds size987
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.9877636-CDS-H-elongata_contig110020:650..16371622929626.9877636-CDS-H-elongata_contig110020:650..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110020 651..1637 +
1691679096.8845153-CDS-H-elongata_contig110020:650..16371691679096.8845153-CDS-H-elongata_contig110020:650..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110020 651..1637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110020.817.1prot_H-elongata_contig110020.817.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110020 651..1637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110020.817.1

>prot_H-elongata_contig110020.817.1 ID=prot_H-elongata_contig110020.817.1|Name=mRNA_H-elongata_contig110020.817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
KADAYLYATLSLFGGILFYKGLDYGVHLLEGNDGGHNIDIDLYDLDESSS
GGGITVAKRNKAAGVDGADPSSEAMAPHGMVPKHDVVVELSSGSNLRPSA
DLHTMHLRVAGKVQPPQQQQQQQHGHVHQEGEELASASLTPKNKSTTGMD
LSAIEEAEGGGRGGVDEGDANAEAVDKQLVRMGLMTALAIGIHNFPEGLA
TFVAALSDPSVGAALAVAIAIHNIPEGLCVAIPVYYATGNRWKAFGWALL
SGVSEPIGAGLGWLILKDSMNELVYGILFGVVAGMMINISIHELIPTAVR
YDPADKVTTNSIIVGMAIMAASLTLFLY*
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mRNA from alignment at H-elongata_contig110020:651..1637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110020.817.1 ID=mRNA_H-elongata_contig110020.817.1|Name=mRNA_H-elongata_contig110020.817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=987bp|location=Sequence derived from alignment at H-elongata_contig110020:651..1637+ (Himanthalia elongata Himel1 dioecious)
AAGGCGGACGCCTATCTTTACGCTACCCTCAGCCTGTTCGGGGGCATCCT GTTCTATAAGGGCCTCGACTACGGTGTGCACCTCCTCGAAGGAAACGACG GCGGCCACAACATCGACATCGACCTCTATGATCTCGACGAGTCGTCCTCC GGCGGTGGGATCACCGTGGCCAAGCGCAACAAGGCTGCCGGTGTCGACGG GGCCGACCCTTCTTCCGAGGCGATGGCTCCTCATGGGATGGTGCCCAAGC ACGACGTGGTGGTCGAGCTCAGCTCCGGATCCAACTTGCGGCCATCCGCC GACCTGCACACGATGCATCTCCGCGTGGCTGGCAAGGTCCAGCCACCCCA GCAGCAGCAGCAGCAGCAGCATGGCCATGTACATCAGGAGGGGGAAGAGC TAGCATCGGCCTCCTTGACTCCCAAAAACAAATCGACCACGGGTATGGAT CTCTCAGCGATCGAGGAGGCGGAAGGCGGGGGCAGGGGTGGGGTTGACGA AGGTGATGCTAATGCTGAGGCGGTCGACAAGCAGCTCGTGCGCATGGGGC TGATGACCGCGCTCGCGATCGGAATCCACAACTTTCCGGAGGGATTGGCG ACGTTCGTGGCGGCGCTCTCCGACCCGTCCGTGGGCGCCGCACTCGCGGT GGCCATCGCCATCCACAACATCCCCGAGGGGCTGTGTGTGGCCATCCCCG TGTACTACGCAACGGGCAACCGCTGGAAGGCGTTTGGGTGGGCGCTGCTT TCCGGGGTGAGCGAACCCATCGGCGCCGGGCTCGGGTGGCTGATTCTCAA GGATTCAATGAACGAGCTGGTGTACGGCATCCTGTTCGGGGTGGTGGCGG GCATGATGATTAACATCTCGATTCATGAGCTCATCCCCACCGCCGTCCGC TACGACCCCGCCGATAAGGTCACCACGAACTCCATCATCGTCGGCATGGC AATCATGGCGGCGAGCCTCACCCTGTTCCTTTACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig110020:651..1637+

>mRNA_H-elongata_contig110020.817.1 ID=mRNA_H-elongata_contig110020.817.1|Name=mRNA_H-elongata_contig110020.817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig110020:651..1637+ (Himanthalia elongata Himel1 dioecious)
AAGGCGGACGCCTATCTTTACGCTACCCTCAGCCTGTTCGGGGGCATCCT
GTTCTATAAGGGCCTCGACTACGGTGTGCACCTCCTCGAAGGAAACGACG
GCGGCCACAACATCGACATCGACCTCTATGATCTCGACGAGTCGTCCTCC
GGCGGTGGGATCACCGTGGCCAAGCGCAACAAGGCTGCCGGTGTCGACGG
GGCCGACCCTTCTTCCGAGGCGATGGCTCCTCATGGGATGGTGCCCAAGC
ACGACGTGGTGGTCGAGCTCAGCTCCGGATCCAACTTGCGGCCATCCGCC
GACCTGCACACGATGCATCTCCGCGTGGCTGGCAAGGTCCAGCCACCCCA
GCAGCAGCAGCAGCAGCAGCATGGCCATGTACATCAGGAGGGGGAAGAGC
TAGCATCGGCCTCCTTGACTCCCAAAAACAAATCGACCACGGGTATGGAT
CTCTCAGCGATCGAGGAGGCGGAAGGCGGGGGCAGGGGTGGGGTTGACGA
AGGTGATGCTAATGCTGAGGCGGTCGACAAGCAGCTCGTGCGCATGGGGC
TGATGACCGCGCTCGCGATCGGAATCCACAACTTTCCGGAGGGATTGGCG
ACGTTCGTGGCGGCGCTCTCCGACCCGTCCGTGGGCGCCGCACTCGCGGT
GGCCATCGCCATCCACAACATCCCCGAGGGGCTGTGTGTGGCCATCCCCG
TGTACTACGCAACGGGCAACCGCTGGAAGGCGTTTGGGTGGGCGCTGCTT
TCCGGGGTGAGCGAACCCATCGGCGCCGGGCTCGGGTGGCTGATTCTCAA
GGATTCAATGAACGAGCTGGTGTACGGCATCCTGTTCGGGGTGGTGGCGG
GCATGATGATTAACATCTCGATTCATGAGCTCATCCCCACCGCCGTCCGC
TACGACCCCGCCGATAAGGTCACCACGAACTCCATCATCGTCGGCATGGC
AATCATGGCGGCGAGCCTCACCCTGTTCCTTTACTAAAAGGCGGACGCCT
ATCTTTACGCTACCCTCAGCCTGTTCGGGGGCATCCTGTTCTATAAGGGC
CTCGACTACGGTGTGCACCTCCTCGAAGGAAACGACGGCGGCCACAACAT
CGACATCGACCTCTATGATCTCGACGAGTCGTCCTCCGGCGGTGGGATCA
CCGTGGCCAAGCGCAACAAGGCTGCCGGTGTCGACGGGGCCGACCCTTCT
TCCGAGGCGATGGCTCCTCATGGGATGGTGCCCAAGCACGACGTGGTGGT
CGAGCTCAGCTCCGGATCCAACTTGCGGCCATCCGCCGACCTGCACACGA
TGCATCTCCGCGTGGCTGGCAAGGTCCAGCCACCCCAGCAGCAGCAGCAG
CAGCAGCATGGCCATGTACATCAGGAGGGGGAAGAGCTAGCATCGGCCTC
CTTGACTCCCAAAAACAAATCGACCACGGGTATGGATCTCTCAGCGATCG
AGGAGGCGGAAGGCGGGGGCAGGGGTGGGGTTGACGAAGGTGATGCTAAT
GCTGAGGCGGTCGACAAGCAGCTCGTGCGCATGGGGCTGATGACCGCGCT
CGCGATCGGAATCCACAACTTTCCGGAGGGATTGGCGACGTTCGTGGCGG
CGCTCTCCGACCCGTCCGTGGGCGCCGCACTCGCGGTGGCCATCGCCATC
CACAACATCCCCGAGGGGCTGTGTGTGGCCATCCCCGTGTACTACGCAAC
GGGCAACCGCTGGAAGGCGTTTGGGTGGGCGCTGCTTTCCGGGGTGAGCG
AACCCATCGGCGCCGGGCTCGGGTGGCTGATTCTCAAGGATTCAATGAAC
GAGCTGGTGTACGGCATCCTGTTCGGGGTGGTGGCGGGCATGATGATTAA
CATCTCGATTCATGAGCTCATCCCCACCGCCGTCCGCTACGACCCCGCCG
ATAAGGTCACCACGAACTCCATCATCGTCGGCATGGCAATCATGGCGGCG
AGCCTCACCCTGTTCCTTTACTAA
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