mRNA_H-elongata_contig110006.816.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110006.816.1
Unique NamemRNA_H-elongata_contig110006.816.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110006.816.1 vs. uniprot
Match: A0A2K3LCP3_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LCP3_TRIPR)

HSP 1 Score: 56.6 bits (135), Expect = 9.950e-8
Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:    4 QVSESWIFDSGSSGHVTPDASYMRNFKSCNKF-LRVASGTLLPIEGHGDLTIDFRSGTGTVRIELEDVAYVPRLTYHLLSLPTFAKKGNYYVGDKNGTRL 300
            + SE W  DSG S H+TP   ++ +F +  K  +++A    L  EG  ++ I  ++G    ++ +EDV YVP++ Y+L+S+    +KG     + N   L
Sbjct:   44 EKSEEWFLDSGCSNHMTPHREWLTSFDASRKTSIKLADSRKLAAEGTYNIVIRGKTGN---KVIVEDVFYVPKMNYNLMSIGQLVEKGFSVTIEGNSLNL 140
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BLAST of mRNA_H-elongata_contig110006.816.1 vs. uniprot
Match: A0A6P4Q2V2_GOSAR (uncharacterized protein LOC108485355 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4Q2V2_GOSAR)

HSP 1 Score: 55.1 bits (131), Expect = 1.290e-6
Identity = 29/88 (32.95%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    4 QVSESWIFDSGSSGHVTPDASYMRNF-KSCNKFLRVASGTLLPIEGHGDLTIDFRSGTGTVRIELEDVAYVPRLTYHLLSLPTFAKKG 264
            +V + W+FDSG + H++PDA+  +   +SC   +++  G  +  EG GD+ I   SG   +     +V +VP +  +LLS+    KKG
Sbjct:  186 KVKKGWLFDSGCTNHMSPDATIFKTLDRSCKTRVKIGDGHCIQAEGIGDVIICTPSGNKLI----PNVLFVPEIDRNLLSIAQLLKKG 269
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BLAST of mRNA_H-elongata_contig110006.816.1 vs. uniprot
Match: A0A225VJ98_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VJ98_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.340e-5
Identity = 24/81 (29.63%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:    1 GQVSESWIFDSGSSGHVTPDASYMRNFKSCNKFLRVASGTLLPIEGHGDLTIDFRSGTGTVRIELEDVAYVPRLTYHLLSL 243
            G+++ +WI DSGSS H+  D +++ N ++CN      +G  L +   G +T+   +G     +EL +V Y   + ++L+S+
Sbjct:  253 GELTGTWILDSGSSRHLVSDMTWLENAETCNDRCTQPNGEPLAVTMKGSVTLKVSAGGAEQTVELTNVYYAENVVHNLISM 333
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BLAST of mRNA_H-elongata_contig110006.816.1 vs. uniprot
Match: A0A4Y1ZP29_ARAVE (gag_pre-integrs domain-containing protein (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZP29_ARAVE)

HSP 1 Score: 50.1 bits (118), Expect = 9.240e-5
Identity = 29/104 (27.88%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:   19 WIFDSGSSGHVTPDASYMRNFKSCN--KFLRVASGTLLPIEGHGDLTIDFRSGTGTVRIELEDVAYVPRLTYHLLSLPTFAKKGNYYVGDKNGTRLCFPSGKKV 324
            WIFD+ ++ H + D   M N++     +      G   P+EG G++ ++F        I L +V Y P+L  +L+S     K G+ +V +KN   +    G K+
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKL 383
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BLAST of mRNA_H-elongata_contig110006.816.1 vs. uniprot
Match: A0A4Y2NTP2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=9 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NTP2_ARAVE)

HSP 1 Score: 50.1 bits (118), Expect = 9.750e-5
Identity = 29/104 (27.88%), Postives = 50/104 (48.08%), Query Frame = 1 
Query:   19 WIFDSGSSGHVTPDASYMRNFKSCN--KFLRVASGTLLPIEGHGDLTIDFRSGTGTVRIELEDVAYVPRLTYHLLSLPTFAKKGNYYVGDKNGTRLCFPSGKKV 324
            WIFD+ ++ H + D   M N++     +      G   P+EG G++ ++F        I L +V Y P+L  +L+S     K G+ +V +KN   +    G K+
Sbjct:  280 WIFDTAATSHFSCDKDSMLNYRPVKGAEVSVAIGGVTCPVEGTGEVELEFYKNGECETITLLNVLYSPKLKQNLISGSKIDKAGHNFVCNKNILNVYHKDGHKL 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110006.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2K3LCP3_TRIPR9.950e-831.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6P4Q2V2_GOSAR1.290e-632.95uncharacterized protein LOC108485355 n=1 Tax=Gossy... [more]
A0A225VJ98_9STRA1.340e-529.63CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
A0A4Y1ZP29_ARAVE9.240e-527.88gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A4Y2NTP2_ARAVE9.750e-527.88Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110006contigH-elongata_contig110006:1447..1770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.92734-CDS-H-elongata_contig110006:1446..17701622929626.92734-CDS-H-elongata_contig110006:1446..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110006 1447..1770 -
1691679096.8744068-CDS-H-elongata_contig110006:1446..17701691679096.8744068-CDS-H-elongata_contig110006:1446..1770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110006 1447..1770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110006.816.1prot_H-elongata_contig110006.816.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110006 1447..1770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110006.816.1

>prot_H-elongata_contig110006.816.1 ID=prot_H-elongata_contig110006.816.1|Name=mRNA_H-elongata_contig110006.816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
GQVSESWIFDSGSSGHVTPDASYMRNFKSCNKFLRVASGTLLPIEGHGDL
TIDFRSGTGTVRIELEDVAYVPRLTYHLLSLPTFAKKGNYYVGDKNGTRL
CFPSGKKV
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mRNA from alignment at H-elongata_contig110006:1447..1770-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110006.816.1 ID=mRNA_H-elongata_contig110006.816.1|Name=mRNA_H-elongata_contig110006.816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig110006:1447..1770- (Himanthalia elongata Himel1 dioecious)
GGGCAGGTGAGCGAGAGTTGGATTTTTGATAGCGGGTCGTCGGGGCATGT
TACCCCCGATGCTTCGTATATGAGAAACTTCAAATCATGCAACAAGTTCT
TGCGTGTAGCAAGTGGTACGCTTCTCCCGATAGAGGGCCATGGAGACCTT
ACTATCGACTTCAGATCTGGCACTGGCACTGTGCGCATAGAGCTCGAAGA
TGTTGCTTACGTGCCACGCTTAACGTACCATTTGCTGTCGCTCCCTACCT
TCGCAAAGAAAGGAAATTACTACGTTGGTGACAAAAACGGTACACGTTTA
TGTTTCCCGTCTGGTAAGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig110006:1447..1770-

>mRNA_H-elongata_contig110006.816.1 ID=mRNA_H-elongata_contig110006.816.1|Name=mRNA_H-elongata_contig110006.816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig110006:1447..1770- (Himanthalia elongata Himel1 dioecious)
GGGCAGGTGAGCGAGAGTTGGATTTTTGATAGCGGGTCGTCGGGGCATGT
TACCCCCGATGCTTCGTATATGAGAAACTTCAAATCATGCAACAAGTTCT
TGCGTGTAGCAAGTGGTACGCTTCTCCCGATAGAGGGCCATGGAGACCTT
ACTATCGACTTCAGATCTGGCACTGGCACTGTGCGCATAGAGCTCGAAGA
TGTTGCTTACGTGCCACGCTTAACGTACCATTTGCTGTCGCTCCCTACCT
TCGCAAAGAAAGGAAATTACTACGTTGGTGACAAAAACGGTACACGTTTA
TGTTTCCCGTCTGGTAAGAAGGTGGGGCAGGTGAGCGAGAGTTGGATTTT
TGATAGCGGGTCGTCGGGGCATGTTACCCCCGATGCTTCGTATATGAGAA
ACTTCAAATCATGCAACAAGTTCTTGCGTGTAGCAAGTGGTACGCTTCTC
CCGATAGAGGGCCATGGAGACCTTACTATCGACTTCAGATCTGGCACTGG
CACTGTGCGCATAGAGCTCGAAGATGTTGCTTACGTGCCACGCTTAACGT
ACCATTTGCTGTCGCTCCCTACCTTCGCAAAGAAAGGAAATTACTACGTT
GGTGACAAAAACGGTACACGTTTATGTTTCCCGTCTGGTAAGAAGGTG
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