mRNA_H-elongata_contig110003.815.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: K8EPY9_9CHLO (Nucleosome binding protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPY9_9CHLO) HSP 1 Score: 55.5 bits (132), Expect = 1.410e-8 Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 4 LLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
L Y F + + +KA NPD+K+T++G+ LGE WR M D++K PY KKAD DK R
Sbjct: 28 LSAYFFFMNDQRAKVVKA-NPDMKVTEVGKKLGELWRAMSDSEKVPYNKKADADKVR 83
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A1V8UUA1_9PEZI (Non-histone chromosomal protein 6 n=2 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8UUA1_9PEZI) HSP 1 Score: 55.8 bits (133), Expect = 1.430e-8 Identity = 22/46 (47.83%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 37 KKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
++ +++ NP +K D+G++LGE+W+G+ DAQKKPY KA+ DK+R
Sbjct: 43 QRDKVREDNPGIKFGDVGKILGEKWKGLSDAQKKPYNAKAETDKKR 88
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: D7FLE3_ECTSI (ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE3_ECTSI) HSP 1 Score: 53.9 bits (128), Expect = 4.530e-8 Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 28 FPIKKRQL-KASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
F K+R + K NPD+K+T++ ++LG RWR MDD K P++KKAD DK R
Sbjct: 3 FSQKERAVVKQENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKAR 52
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A6H5JHH0_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH0_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 7.650e-8 Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 28 FPIKKRQL-KASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
F K+R + K NPD+K+T++ ++LG RWR MDD K P++KKAD DK R
Sbjct: 43 FSQKERAVVKEENPDMKVTEISKLLGARWREMDDNDKAPFQKKADKDKAR 92
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A8H7BXE0_9FUNG (Non-histone chromosomal protein 6 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BXE0_9FUNG) HSP 1 Score: 53.9 bits (128), Expect = 7.940e-8 Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 37 KKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
K++++K NP+ +G++LGE+W+GM D QKKPY +KA+ DK+R
Sbjct: 44 KRQEVKDENPEATFGQIGKILGEKWKGMTDEQKKPYVEKAEADKKR 89
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 1.380e-7 Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 40 KRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
+ Q+K NP+LK+T++ ++LGE+W +D+ QKKPY+ KAD DK R
Sbjct: 568 RAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKAR 612
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A2N5VL41_9BASI (HMG box domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VL41_9BASI) HSP 1 Score: 53.5 bits (127), Expect = 2.820e-7 Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 PLLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
PL Y F+ ++R +K NPD D+GR+LG++W+G+ + KKPY+ A VDK+R
Sbjct: 92 PLSAYMYFSQDWRER-IKIENPDCSFGDIGRLLGQKWKGLSEEDKKPYEDMASVDKKR 148
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A167JA28_PHYB8 (HMG box domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167JA28_PHYB8) HSP 1 Score: 52.4 bits (124), Expect = 2.920e-7 Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 37 KKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
++ +K +NPD +G++LGERW+ M DA KKPY +KA++DK+R
Sbjct: 44 QRHVVKENNPDASFGQIGKILGERWKKMTDADKKPYNQKAELDKKR 89
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A0H5R7U8_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7U8_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 6.560e-7 Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 PLLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
PL Y F+ ++ Q++ NPD D+GR+LG+ W+ ++D++K+PY KA DKER
Sbjct: 150 PLSAYMYFSQD-RRPQIRTENPDTAFGDLGRLLGQLWKSLEDSEKQPYNDKAQADKER 206
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A8H7UZ93_9FUNG (HMG box domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UZ93_9FUNG) HSP 1 Score: 51.2 bits (121), Expect = 7.120e-7 Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 40 KRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 174
+ Q+K NPD +G++LGE+W+GM D KKP+ +KA+ DK+R
Sbjct: 45 RAQVKEDNPDATFGQIGKLLGEKWKGMTDEDKKPFHEKAEKDKQR 89 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110003.815.1 >prot_H-elongata_contig110003.815.1 ID=prot_H-elongata_contig110003.815.1|Name=mRNA_H-elongata_contig110003.815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp PLLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKback to top mRNA from alignment at H-elongata_contig110003:527..703+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110003.815.1 ID=mRNA_H-elongata_contig110003.815.1|Name=mRNA_H-elongata_contig110003.815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig110003:527..703+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110003:527..703+ >mRNA_H-elongata_contig110003.815.1 ID=mRNA_H-elongata_contig110003.815.1|Name=mRNA_H-elongata_contig110003.815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig110003:527..703+ (Himanthalia elongata Himel1 dioecious)back to top |