mRNA_H-elongata_contig109989.811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109989.811.1
Unique NamemRNA_H-elongata_contig109989.811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109989.811.1 vs. uniprot
Match: A0A7S4ERE6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ERE6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.280e-6
Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:    1 QQFGDLAMARRLFANGLKADPGNPFVCHAWGLMEHRDGDIDRARDIFKV---CRSSRPKAAIASALGELEATRGDLEGAR 231
            Q  GDL  AR LF   L  D  NP+VCHA+GLME   G    A  + K      S++  AA+   LGE+  + G+L  AR
Sbjct:  271 QTRGDLPRARELFEECLDIDSHNPYVCHAYGLMEKHLGRDAAAISLLKQVLEAPSAKVTAALVCTLGEIHISAGNLAEAR 350
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BLAST of mRNA_H-elongata_contig109989.811.1 vs. uniprot
Match: A0A448Z6G4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6G4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.830e-6
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:    1 QQFGDLAMARRLFANGLKADPGNPFVCHAWGLMEHRDGDIDRARDIFK---VCRSSRPKAAIASALGELEATRGDLEGARREFQEGLARLEE----ARGGRAAPRRKPGDWEESEDPAEILVAWARLEEQ 369
            Q  GDL  AR LF   ++ D  NPFV HA+ LME + G    A  + K      S++  AA+   LGE+  + G+L  AR  ++  +  +E     A GG    +R+       +D  E+ +A A LEE+
Sbjct:  271 QTRGDLIRARELFEECIEIDSYNPFVAHAYSLMERQLGRDGAAISLLKHVLEAPSAKVTAALVCTLGEIYISAGNLTEARDLYKHHIDAVENYSSSAVGGSMDRKRRRRHLPTEKDRVEVYLAAAWLEER 400
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BLAST of mRNA_H-elongata_contig109989.811.1 vs. uniprot
Match: A0A7S0Y8M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y8M3_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 9.290e-5
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:    1 QQFGDLAMARRLFANGLKADPGNPFVCHAWGLMEHRDGDIDRARDIFKVCRSSRPKAAIASA 186
            Q  GD+  +R LF   +  DP NP+VCHA+ LME + G+ + A  + K    + P A + +A
Sbjct:   51 QNRGDMKRSRELFDEAVGVDPHNPYVCHAYSLMEKKLGNNEAAISLLKQVLDA-PSAKVTAA 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109989.811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4ERE6_9STRA4.280e-641.25Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448Z6G4_9STRA5.830e-633.08Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0Y8M3_9STRA9.290e-537.10Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109989contigH-elongata_contig109989:703..1672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109989.811.1prot_H-elongata_contig109989.811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109989 724..1672 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.5947723-UTR-H-elongata_contig109989:702..7231622929626.5947723-UTR-H-elongata_contig109989:702..723Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109989 703..723 +
1691679096.7238426-UTR-H-elongata_contig109989:702..7231691679096.7238426-UTR-H-elongata_contig109989:702..723Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109989 703..723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.617092-CDS-H-elongata_contig109989:723..8551622929626.617092-CDS-H-elongata_contig109989:723..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109989 724..855 +
1691679096.732151-CDS-H-elongata_contig109989:723..8551691679096.732151-CDS-H-elongata_contig109989:723..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109989 724..855 +
1622929626.6276734-CDS-H-elongata_contig109989:1447..16721622929626.6276734-CDS-H-elongata_contig109989:1447..1672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109989 1448..1672 +
1691679096.7392669-CDS-H-elongata_contig109989:1447..16721691679096.7392669-CDS-H-elongata_contig109989:1447..1672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109989 1448..1672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109989.811.1

>prot_H-elongata_contig109989.811.1 ID=prot_H-elongata_contig109989.811.1|Name=mRNA_H-elongata_contig109989.811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MARRLFANGLKADPGNPFVCHAWGLMEHRDGDIDRARDIFKVCRSSRPKA
AIASALGELEATRGDLEGARREFQEGLARLEEARGGRAAPRRKPGDWEES
EDPAEILVAWARLEEQVVN
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mRNA from alignment at H-elongata_contig109989:703..1672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109989.811.1 ID=mRNA_H-elongata_contig109989.811.1|Name=mRNA_H-elongata_contig109989.811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=970bp|location=Sequence derived from alignment at H-elongata_contig109989:703..1672+ (Himanthalia elongata Himel1 dioecious)
CAACAGTTTGGAGACCTCGCCATGGCGAGGCGGCTGTTCGCCAACGGCCT
CAAGGCCGACCCCGGGAACCCCTTCGTGTGCCACGCGTGGGGGCTAATGG
AGCATCGCGACGGAGACATCGACAGGGCGCGGGATATATTTAAGGTATGT
CGAGTAGCGCGCTGCGATGCCTTACCCCATGCAATGCTATGTAATATTGT
GCAATGCGATGGAATAGGATAGTATCCGCTAGGCGATTCGACGCCGTGCC
GCGCTCTGCGATGCGACGTCGTGCGCGGCTGTACGGGATGGATGCTCCGA
TATGCGGCGATGGTGTACTGTACGATGCTTTAATTAAGATGGTGATGCGG
CGTACTCGCGCGAGTGGACCGTGAGTGTTCCCCCAGGGAGTTCGACCCAA
ACACGCACGGACGTGAGTGAATGATTGTTTCTAATTCCTCTTCACAGCGG
TCGCCCTCTAACACTATGCTTTGCTCGCGAGAGCCAATATAACCTTCTTG
GCTCGACGTAAAAGGACGCTTGCGGAGAGACGGGAGTGTATGCAGTAAAG
ACAGAAGAGAGAGAAAACGAGATATCTAATACGACGATAATTTTTCTCTT
GCGTGCATTCGTATGTTTGTAACCTATCTGACGGCGTGTAACTTACCCCG
TCCTCCTCCCACGTCTAAAGCCCTTTTCCCGTCTCGTTTTCGCTCCTTGA
CACGGGCACACGTTAAATTGTTTTGTTACGCACACACAACTCAAGAGCTC
TCGTCCCAAGGCAGCGATCGCCTCGGCCCTTGGGGAGCTGGAGGCGACGC
GCGGTGACCTGGAAGGCGCTCGCCGGGAGTTCCAAGAGGGGTTGGCCCGC
CTCGAAGAAGCTAGGGGTGGCCGTGCGGCGCCCAGGCGTAAGCCGGGCGA
CTGGGAAGAGTCAGAAGATCCCGCCGAGATCCTGGTCGCGTGGGCCAGGC
TCGAGGAACAGGTGGTTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig109989:703..1672+

>mRNA_H-elongata_contig109989.811.1 ID=mRNA_H-elongata_contig109989.811.1|Name=mRNA_H-elongata_contig109989.811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig109989:703..1672+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAGGCGGCTGTTCGCCAACGGCCTCAAGGCCGACCCCGGGAACCC
CTTCGTGTGCCACGCGTGGGGGCTAATGGAGCATCGCGACGGAGACATCG
ACAGGGCGCGGGATATATTTAAGGTATGTCGAATGGCGAGGCGGCTGTTC
GCCAACGGCCTCAAGGCCGACCCCGGGAACCCCTTCGTGTGCCACGCGTG
GGGGCTAATGGAGCATCGCGACGGAGACATCGACAGGGCGCGGGATATAT
TTAAGGTATGTCGAAGCTCTCGTCCCAAGGCAGCGATCGCCTCGGCCCTT
GGGGAGCTGGAGGCGACGCGCGGTGACCTGGAAGGCGCTCGCCGGGAGTT
CCAAGAGGGGTTGGCCCGCCTCGAAGAAGCTAGGGGTGGCCGTGCGGCGC
CCAGGCGTAAGCCGGGCGACTGGGAAGAGTCAGAAGATCCCGCCGAGATC
CTGGTCGCGTGGGCCAGGCTCGAGGAACAGGTGGTTAATAGCTCTCGTCC
CAAGGCAGCGATCGCCTCGGCCCTTGGGGAGCTGGAGGCGACGCGCGGTG
ACCTGGAAGGCGCTCGCCGGGAGTTCCAAGAGGGGTTGGCCCGCCTCGAA
GAAGCTAGGGGTGGCCGTGCGGCGCCCAGGCGTAAGCCGGGCGACTGGGA
AGAGTCAGAAGATCCCGCCGAGATCCTGGTCGCGTGGGCCAGGCTCGAGG
AACAGGTGGTTAAT
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