mRNA_H-elongata_contig109974.809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109974.809.1
Unique NamemRNA_H-elongata_contig109974.809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.980e-24
Identity = 56/86 (65.12%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    7 QKALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSDKV 264
            ++A+V WS  ADDGG +LTKYVV+ASTAYADINVEA                 TV GLTNGLVYSFQVVAANAFG+S RSLPS+KV
Sbjct: 1773 KQAIVQWSAAADDGGGDLTKYVVIASTAYADINVEA-----------------TVEGLTNGLVYSFQVVAANAFGYSTRSLPSNKV 1841          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-8
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    7 QKALVSWSPVADDGGSELTKYVVVASTAYADINVEAI 117
            ++A V WS  ADDGG +LTKYVV+ASTAYADINVEAI
Sbjct: 1567 KQAFVQWSAAADDGGGDLTKYVVIASTAYADINVEAI 1603          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: A0A535MTZ7_9CHLR (Mannan endo-1,4-beta-mannosidase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535MTZ7_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 1.760e-7
Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 1
Query:    4 DQKALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSD 258
            D  A VSW P A DGG+ +T Y V+A    A ++V +  T              T+SGLTNG+ Y+F V A+N  G S  SL S+
Sbjct:  646 DGSASVSWLPPAYDGGAPVTSYSVIAQPGTASVSVPSSMTTA------------TISGLTNGVTYTFTVTASNTEGTSDPSLVSN 718          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: A0A3C1E2K8_9MICO (Uncharacterized protein (Fragment) n=1 Tax=Microbacteriaceae bacterium TaxID=1873462 RepID=A0A3C1E2K8_9MICO)

HSP 1 Score: 56.6 bits (135), Expect = 2.200e-7
Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   10 KALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSD 258
            +A V+W+    +GGS +T Y V   T Y    V  +A       G  P T  T+SGLTNG+ Y+F V A NA G  P S PS+
Sbjct:   63 QATVTWT-APSNGGSAITSYTV---TPY----VAGVAQPATTVSGSPPATSATISGLTNGVTYTFTVSATNAIGTGPASAPSN 137          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: A9A4J1_NITMS (Fibronectin type III domain protein n=2 Tax=Nitrosopumilus maritimus TaxID=338192 RepID=A9A4J1_NITMS)

HSP 1 Score: 56.6 bits (135), Expect = 2.480e-7
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    7 QKALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHS-PRSLPSDK 261
            Q   +SW+P  D G S +T+Y +     Y+  N +   TV+   D     T  T+SGLTNGL Y FQV+A+NAFG S P ++ S K
Sbjct: 3382 QSVTLSWTPQFDQG-STITQYTI----QYSSDNFQTTGTVVIGDDEALA-TSTTISGLTNGLTYQFQVIASNAFGPSDPSNIKSAK 3461          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: R4LVA4_9ACTN (Fibronectin type III domain-containing protein n=2 Tax=Actinoplanes sp. N902-109 TaxID=649831 RepID=R4LVA4_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 3.230e-7
Identity = 39/95 (41.05%), Postives = 46/95 (48.42%), Query Frame = 1
Query:    1 ADQKALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGEPPTEG----------TVSGLTNGLVYSFQVVAANAFGHSPRSLPS 255
            A ++  VSW+P A DGG  +T Y V    AY D      AT  P+   G   TE           TV+GLTNG  Y+FQV A NA G    S PS
Sbjct:  390 APRQVTVSWNPPATDGGPVITSYKV---QAYQDGQPVEGATCTPQVRSGISLTEFRVAASEVLTCTVTGLTNGTAYTFQVTATNAVGTGDASAPS 481          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: A0A5C8US72_9MICO (DUF4082 domain-containing protein n=1 Tax=Lacisediminihabitans profunda TaxID=2594790 RepID=A0A5C8US72_9MICO)

HSP 1 Score: 55.8 bits (133), Expect = 4.580e-7
Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   10 KALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSD 258
            +A V+W+    +GGS +T Y V   T Y    V  IA       G  P T  T++GLTNG+ Y+F V A NA G  P S PS+
Sbjct: 2161 QATVTWT-APSNGGSAITSYTV---TPY----VAGIAQPATTVSGSPPATSATITGLTNGVTYTFTVSATNAIGTGPASAPSN 2235          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: A0A7M7N314_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7N314_STRPU)

HSP 1 Score: 55.5 bits (132), Expect = 6.350e-7
Identity = 32/84 (38.10%), Postives = 43/84 (51.19%), Query Frame = 1
Query:   19 VSWSPVADDGGSELTKYVVV----ASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSD 258
            ++WSP  DDGGSE+T Y++     A   +  +N E +           P    TV+GLT   +Y F+V A N  G  P SLPSD
Sbjct: 14744 LTWSPPDDDGGSEVTGYILEKRDKARNKWTKVNKEPV-----------PEISFTVTGLTEDAIYDFRVSAVNKAGEGPPSLPSD 14816          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: UPI001BB1EEA8 (LOW QUALITY PROTEIN: titin-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1EEA8)

HSP 1 Score: 53.9 bits (128), Expect = 2.210e-6
Identity = 31/86 (36.05%), Postives = 45/86 (52.33%), Query Frame = 1
Query:   19 VSWSPVADDGGSELTKYVVV----ASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSDKV 264
            ++W P  DDGGSE+T Y++     +   + ++N E I           P T  TV+GLT   +Y F+V A N  G  P SLPS+ +
Sbjct: 2138 LTWLPPDDDGGSEVTGYIIEKRDKSRDKWTNVNKEPI-----------PQTSFTVTGLTEDAIYDFRVSAVNIAGVGPPSLPSETI 2212          
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Match: UPI001E328FE1 (fibronectin type III domain-containing protein n=1 Tax=Actinoplanes awajinensis TaxID=135946 RepID=UPI001E328FE1)

HSP 1 Score: 53.5 bits (127), Expect = 2.750e-6
Identity = 36/87 (41.38%), Postives = 46/87 (52.87%), Query Frame = 1
Query:    4 DQKALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGEPPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSDKV 264
            D+ A++ W+    +GGS +  Y V A      I V   AT       G   TE T++GLTNGL YSF V A NA G S  S PS++V
Sbjct:   30 DESAVIRWTAPLHNGGSPIYGYEVQALDDETGIVVNVDAT-------GPEATELTMTGLTNGLPYSFWVRAVNAAGPSDFSTPSNRV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109974.809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBK9_ECTSI2.980e-2465.12OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K857_9PHAE1.080e-875.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A535MTZ7_9CHLR1.760e-740.00Mannan endo-1,4-beta-mannosidase n=2 Tax=Chlorofle... [more]
A0A3C1E2K8_9MICO2.200e-740.96Uncharacterized protein (Fragment) n=1 Tax=Microba... [more]
A9A4J1_NITMS2.480e-741.86Fibronectin type III domain protein n=2 Tax=Nitros... [more]
R4LVA4_9ACTN3.230e-741.05Fibronectin type III domain-containing protein n=2... [more]
A0A5C8US72_9MICO4.580e-740.96DUF4082 domain-containing protein n=1 Tax=Lacisedi... [more]
A0A7M7N314_STRPU6.350e-738.10Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI001BB1EEA82.210e-636.05LOW QUALITY PROTEIN: titin-like n=1 Tax=Lytechinus... [more]
UPI001E328FE12.750e-641.38fibronectin type III domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109974contigH-elongata_contig109974:559..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D8LBK9
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.523967-CDS-H-elongata_contig109974:558..8221622929626.523967-CDS-H-elongata_contig109974:558..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109974 559..822 -
1691679096.6917415-CDS-H-elongata_contig109974:558..8221691679096.6917415-CDS-H-elongata_contig109974:558..822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109974 559..822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109974.809.1prot_H-elongata_contig109974.809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109974 559..822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109974.809.1

>prot_H-elongata_contig109974.809.1 ID=prot_H-elongata_contig109974.809.1|Name=mRNA_H-elongata_contig109974.809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
ADQKALVSWSPVADDGGSELTKYVVVASTAYADINVEAIATVLPESDGGE
PPTEGTVSGLTNGLVYSFQVVAANAFGHSPRSLPSDKV
back to top

mRNA from alignment at H-elongata_contig109974:559..822-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109974.809.1 ID=mRNA_H-elongata_contig109974.809.1|Name=mRNA_H-elongata_contig109974.809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig109974:559..822- (Himanthalia elongata Himel1 dioecious)
GCCGACCAAAAGGCGCTAGTGAGCTGGTCCCCCGTCGCGGACGACGGAGG AAGCGAGCTCACTAAGTACGTGGTGGTGGCCTCAACGGCGTACGCGGACA TCAACGTGGAGGCCATCGCCACCGTGCTCCCCGAGTCCGACGGTGGGGAG CCCCCCACGGAGGGTACCGTGTCGGGACTGACGAATGGCCTCGTCTACAG CTTTCAGGTGGTGGCGGCCAATGCGTTCGGTCACAGCCCTCGCAGCCTGC CTTCCGACAAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109974:559..822-

>mRNA_H-elongata_contig109974.809.1 ID=mRNA_H-elongata_contig109974.809.1|Name=mRNA_H-elongata_contig109974.809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig109974:559..822- (Himanthalia elongata Himel1 dioecious)
GCCGACCAAAAGGCGCTAGTGAGCTGGTCCCCCGTCGCGGACGACGGAGG
AAGCGAGCTCACTAAGTACGTGGTGGTGGCCTCAACGGCGTACGCGGACA
TCAACGTGGAGGCCATCGCCACCGTGCTCCCCGAGTCCGACGGTGGGGAG
CCCCCCACGGAGGGTACCGTGTCGGGACTGACGAATGGCCTCGTCTACAG
CTTTCAGGTGGTGGCGGCCAATGCGTTCGGTCACAGCCCTCGCAGCCTGC
CTTCCGACAAGGTGGCCGACCAAAAGGCGCTAGTGAGCTGGTCCCCCGTC
GCGGACGACGGAGGAAGCGAGCTCACTAAGTACGTGGTGGTGGCCTCAAC
GGCGTACGCGGACATCAACGTGGAGGCCATCGCCACCGTGCTCCCCGAGT
CCGACGGTGGGGAGCCCCCCACGGAGGGTACCGTGTCGGGACTGACGAAT
GGCCTCGTCTACAGCTTTCAGGTGGTGGCGGCCAATGCGTTCGGTCACAG
CCCTCGCAGCCTGCCTTCCGACAAGGTG
back to top