mRNA_H-elongata_contig109957.806.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A6H5JEE3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEE3_9PHAE) HSP 1 Score: 224 bits (570), Expect = 3.310e-69 Identity = 108/181 (59.67%), Postives = 133/181 (73.48%), Query Frame = 1
Query: 1 GKTVVPDEFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTD-ANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
G+ V PDE C+PL +TT+DGE DLNPCGLIANSMFNDII L++E VTM E+DISW+SDR RFKQPPGF N+SC DC + Y C ++TD + T +K+WYPD++ TQ+LYETYP +VSPI+GVLNEHFIVWMRTAGLP FRK+YGRI++++ P LTFNI
Sbjct: 147 GEAVEPDENCEPLERTTVDGEILDLNPCGLIANSMFNDIIELTTEGVTMSEKDISWKSDRETRFKQPPGFTFAECS------ANTSCSDCLG-----GSKYSSCGDHTDESTGTEYKFWYPDDETTQFLYETYPGVVSPIEGVLNEHFIVWMRTAGLPRFRKLYGRIDEQIEAPQVLTFNI 316
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A6S9FRN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FRN7_HETAK) HSP 1 Score: 181 bits (460), Expect = 6.750e-53 Identity = 93/185 (50.27%), Postives = 125/185 (67.57%), Query Frame = 1
Query: 1 GKTVVPD-EFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSEN---VTMFEEDISWESDRNKRFKQPPGFASVVVGK-GNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
G T+ D ++C PLT G + DLNPCGL+ANS+FND+I L + V + E I+W+SDR +F QP GFA V +G C L +CE F D++ YD CE YTDA NT + Y+YP+ND+ QYLYET+P++++PI+GV NEHFIVWMRTA LP FRK+YG I+ +L+ D +TF +
Sbjct: 126 GSTLHADTDYCSPLTSN---GSQ-DLNPCGLVANSLFNDVIALEASTNAAVALDETGITWDSDRATKFAQPDGFAYVTLGDDAGCTELPCTCETAF-----DSSDYDDCEFYTDAENTTYAYYYPENDEIQYLYETFPEVINPIEGVTNEHFIVWMRTAALPKFRKLYGIIDTDLTEGDEITFKV 301
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: D8LLD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD4_ECTSI) HSP 1 Score: 165 bits (417), Expect = 3.570e-47 Identity = 86/181 (47.51%), Postives = 109/181 (60.22%), Query Frame = 1
Query: 25 FCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSS-----ENVT----MFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
C PL + DLNPCGL+ANSMFND+I + S E+++ M E ISW +DR+ F QP GF + SCEDC A Y C ++TD T++KYWYPD TQYLYETYP ++SP+DGV +EHF+VWMRTA L TFR +YGRIE +L P +TFN+
Sbjct: 112 ICSPLESI----DTLDLNPCGLVANSMFNDVIVVDSAPEPYESLSPYEYMDEGGISWVTDRDGDFSQPDGFVRAECAP------SVSCEDCLGS-----AAYSDCGSFTDRTGTSYKYWYPDEASTQYLYETYPNVISPVDGVTDEHFVVWMRTAALSTFRNLYGRIEHDLVAPAEITFNV 277
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A836CGC5_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC5_9STRA) HSP 1 Score: 159 bits (401), Expect = 3.830e-44 Identity = 81/171 (47.37%), Postives = 108/171 (63.16%), Query Frame = 1
Query: 28 CDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
C PL + + L+PCGLIAN++FNDIIT++S+ V M E I+W +D +K F+QP GF + C C + YDGC TDA+ T++ YWYPD DK QYLYET+P ++SP++GV NEHF+VWMR AGL FRK YG+I Q L+ T+TFN+
Sbjct: 141 CTPLERNG----DLTLSPCGLIANTLFNDIITVTSDQV-MEETGIAWNTDLDK-FEQPHGFVTTACA------ATDECASCLQAAYNSDDDYDGCGIATDASGTSYAYWYPDEDKIQYLYETFPDVISPLEGVKNEHFMVWMRVAGLRQFRKPYGKISQSLAKGTTVTFNV 299
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: D8LE53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE53_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.610e-39 Identity = 84/185 (45.41%), Postives = 114/185 (61.62%), Query Frame = 1
Query: 1 GKTVVPD-EFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSE----ESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
G T D + CDPL I L+PCGLIAN++FNDI T+SS TM E DI+W+SD +F QP GF + C C ++ +S+ ++GC TD+ Y+YPD D TQYLYET+P+++SP+DGV NEHFIVWMR +GL +FRK+YGRI+ L+ DTL+F++
Sbjct: 133 GSTSTSDIDDCDPL----IYNGTLVLHPCGLIANTLFNDIFTVSSGQ-TMEETDIAWDSDVADKFVQPDGFVTTACED------EDGCVACLTDAGLTDSDGGTTFEGC-GVTDST----AYYYPDEDTTQYLYETFPEVISPLDGVKNEHFIVWMRVSGLSSFRKLYGRIDDGLNEGDTLSFDV 301
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: K0TBR7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBR7_THAOC) HSP 1 Score: 146 bits (369), Expect = 8.550e-39 Identity = 77/165 (46.67%), Postives = 102/165 (61.82%), Query Frame = 1
Query: 73 LNPCGLIANSMFNDIITLSS---------ENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
+NPCGLIAN++FND+ITL S ++ + E I+W+SD +F+QP GF CP C DC ++ + E Y D + F+Y+YPD++ TQYLYETYP +VSPIDGV+NEHF+VWMR A LP FRK+YG IE+ + TLTF I
Sbjct: 213 INPCGLIANTLFNDVITLESIVTPDGTVLDDAPLVETGIAWQSDLEWKFRQPEGFRYEE-----CPGGEDEC-DCSQLGADGERLWSCTEPYRDEDGLYFRYYYPDDETTQYLYETYPMVVSPIDGVMNEHFVVWMRVAALPQFRKLYGYIERTIPAGSTLTFAI 371
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A835Z5R6_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R6_9STRA) HSP 1 Score: 140 bits (354), Expect = 3.690e-37 Identity = 83/189 (43.92%), Postives = 109/189 (57.67%), Query Frame = 1
Query: 1 GKTVVPDEFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVT---------MFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
G V D C PL K G+++ LNPCGLIANSMFND+ T+S+ M E I+W +D + RF QP GF G +SC C A Y C TDA+ + Y+YP++ TQYL+ETYPK+VSP++GV NEHF+VWMRTA LPTFRK+YG I+ ++ + F+I
Sbjct: 132 GSNVQGDSLCSPLKKN---GDQW-LNPCGLIANSMFNDVFTVSAAPAPFDATAPAAYMRETGIAWPNDID-RFSQPDGFVKKSCGG------TASCASCLG------AGYTDCGVATDADGKRWAYYYPNDATTQYLHETYPKVVSPLEGVTNEHFMVWMRTAALPTFRKLYGIIDSDIPGGWDVQFDI 303
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A6U4G101_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G101_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.070e-37 Identity = 74/159 (46.54%), Postives = 102/159 (64.15%), Query Frame = 1
Query: 73 LNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASV-VVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENY--TDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
L+PCGLIANS+FND+ITL + + M E+DI+WESD++ +F QP F G G +++C+ S + P D N T + Y+Y + D YLYE +P++++P++GV NEHFIVWMRTAGLP FRK+YGRIEQ++S LTF I
Sbjct: 207 LSPCGLIANSLFNDVITLQNTEIDMAEDDIAWESDKDAKFDQPDDFVKERYTGTGTA--TDAACQTQLSSNGD--VPSDQLSNVGSTTFEGEQWCYFYNNEDDITYLYEVFPEVINPVEGVNNEHFIVWMRTAGLPQFRKLYGRIEQDISEGTQLTFQI 361
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A7S3H619_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H619_9STRA) HSP 1 Score: 139 bits (349), Expect = 6.930e-37 Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 1
Query: 28 CDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVT-----MFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
C+PL K G LNPCGLIANS F DII L S + T M E IS +SDR+ FKQ GFA V V + SC + GC+ YTD N ++ ++YP++D QYLYETYP +SPI GV +EHFIVWM+T+ LPTFRK+YGRIE + D L F+I
Sbjct: 96 CNPLYKN---GSML-LNPCGLIANSFFTDIIALDSASSTPGGLNMSETSISLKSDRDDIFKQVDGFAYVAVSD-----TSVSCVSVGLKA--------GCKAYTDLNGQDYLFYYPNDDTVQYLYETYPDQISPIVGVTDEHFIVWMKTSSLPTFRKLYGRIEGNFNKGDRLVFDI 254
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A7R9U6E4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6E4_9STRA) HSP 1 Score: 137 bits (346), Expect = 8.240e-36 Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = 1
Query: 73 LNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCEN--YTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
L+PCGLIANS+FND+ITL++ +V M E+DISW+SDR+ +F QP F S + + +C E+ E + P + +T ++ ++Y + D+ YLYE YP++++P++GV NEHFIVWMRTAGLP FRK+YGRIE+++ L F I
Sbjct: 168 LSPCGLIANSLFNDVITLTNSDVEMREDDISWQSDRDAKFDQPDDFISERLRNTSASDKAQACI----EQLESDVPDSQVSSIGFTVFEGEDWCFFYRNEDQITYLYEIYPEVINPVEGVNNEHFIVWMRTAGLPQFRKLYGRIEEDIPKGTQLRFQI 321 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig109957.806.1 >prot_H-elongata_contig109957.806.1 ID=prot_H-elongata_contig109957.806.1|Name=mRNA_H-elongata_contig109957.806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp GKTVVPDEFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMFback to top mRNA from alignment at H-elongata_contig109957:376..2008- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig109957.806.1 ID=mRNA_H-elongata_contig109957.806.1|Name=mRNA_H-elongata_contig109957.806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1633bp|location=Sequence derived from alignment at H-elongata_contig109957:376..2008- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig109957:376..2008- >mRNA_H-elongata_contig109957.806.1 ID=mRNA_H-elongata_contig109957.806.1|Name=mRNA_H-elongata_contig109957.806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig109957:376..2008- (Himanthalia elongata Himel1 dioecious)back to top |