mRNA_H-elongata_contig109939.805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109939.805.1
Unique NamemRNA_H-elongata_contig109939.805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: A0A6H5KMD5_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMD5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.340e-30
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQLPKIEPLAAKLKEIGAPR 216
            LA RKPETSGMLR+CE+LDVRVLAYSPLAQGLLTGKYS DF+PSGPR R+FK +LP + PL  KLKEIG PR
Sbjct:  274 LANRKPETSGMLRLCEDLDVRVLAYSPLAQGLLTGKYSKDFVPSGPRGRVFKKKLPAVAPLVDKLKEIGTPR 345          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: A0A836CJF6_9STRA (Aldo/keto reductase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJF6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.660e-20
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQLPKIEPLAAKLKEIGAPR 216
            L +RKPE SG+L  C  L V+VLAYSPLAQGLLTGKYS   LPSGPR R++KS +PKI PL A L +I   R
Sbjct:  190 LLSRKPEMSGLLDKCSSLGVKVLAYSPLAQGLLTGKYSEANLPSGPRERMYKSMMPKITPLIATLTQIAQER 261          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: L1IYR3_GUITC (Aldo_ket_red domain-containing protein n=3 Tax=Geminigeraceae TaxID=589343 RepID=L1IYR3_GUITC)

HSP 1 Score: 85.1 bits (209), Expect = 5.850e-18
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQLPKIEPLAAKLKEIG 207
            L  R PE +G+   C+EL V++LAYSPLAQG LTG+YSS  LPSGPR R+F+ ++ K++PL + LK IG
Sbjct:  195 LLHRTPEMNGVKEACDELGVKILAYSPLAQGCLTGRYSSTNLPSGPRGRIFEQRMDKVDPLLSALKRIG 263          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: A0A1F8RSB6_9CHLR (2,5-didehydrogluconate reductase n=1 Tax=Chloroflexi bacterium RBG_16_68_14 TaxID=1797660 RepID=A0A1F8RSB6_9CHLR)

HSP 1 Score: 81.6 bits (200), Expect = 7.250e-17
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQLPKIEPLAAKLKEIGAPR 216
            L  R PE SG+L  C EL V ++AYSPLAQGLLTGKYS    PSG R R  + +L KIEP+ A L+EIG  R
Sbjct:  169 LLERAPERSGLLDACRELGVTLIAYSPLAQGLLTGKYSKASPPSGMRGRRMRKRLTKIEPVVASLREIGEAR 240          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: UPI001AC25E54 (Pyridoxine 4-dehydrogenase n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001AC25E54)

HSP 1 Score: 78.6 bits (192), Expect = 1.380e-15
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQ-LPKIEPLAAKLKEIG 207
            L  RKPETSG+++VC +L V ++AYSP+A+G+LTGKY+ D +P G R R++  Q L KI+PL   L EIG
Sbjct:  187 LLDRKPETSGLVKVCRDLGVTLIAYSPIAKGMLTGKYTPDNVPPGMRGRMYNRQYLGKIQPLIGLLNEIG 256          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: A0A6U4NZL0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4NZL0_HEMAN)

HSP 1 Score: 78.2 bits (191), Expect = 2.830e-15
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQLPKIEPLAAKLKEIG 207
            L  R  E +G+   CE+L V +LAYSPLAQGLLTG+YSS  LP GPRA + K +  +++PL   LKE+G
Sbjct:  248 LLHRNIERNGVKEACEDLGVNILAYSPLAQGLLTGRYSSTNLPKGPRANIMKGRFSELDPLLVGLKEVG 316          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: A0A7S0VLR8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VLR8_9CRYP)

HSP 1 Score: 73.9 bits (180), Expect = 3.640e-15
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQLPKIEPLAAKLKEIG 207
            L  R  E +G+   CEEL V +LAYSPLAQG+LTG+YS+  LP GPRA + + +  +++PL   LKE+G
Sbjct:   34 LLHRNIEKNGVKEACEELGVGILAYSPLAQGVLTGRYSASNLPKGPRANIMRGRFDELDPLLDGLKEMG 102          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: A0A6U1LWV5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1LWV5_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 3.750e-15
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQ-LPKIEPLAAKLKEIGAPRSD 222
            L  R PET+G+L VC+E  + ++AYSPLAQG+LTGKYS    PSGPR   F  Q L  +EPL + LK+IG+  SD
Sbjct:  238 LMYRAPETNGVLGVCKEKGITLVAYSPLAQGILTGKYSLSNRPSGPRNATFTDQRLRSVEPLLSLLKDIGSAHSD 312          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: J3MII3_ORYBR (Aldo_ket_red domain-containing protein n=12 Tax=Poaceae TaxID=4479 RepID=J3MII3_ORYBR)

HSP 1 Score: 75.9 bits (185), Expect = 1.830e-14
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQ-LPKIEPLAAKLKEIGA 210
            L  R PE +G+   C+EL + ++AYSP+AQG+LTGKY+ D  P+GPR R++  + L K++PL  ++KEIGA
Sbjct:  233 LIYRNPEENGVKAACDELGITLIAYSPIAQGILTGKYTPDNPPTGPRGRIYTPEFLTKLQPLINRIKEIGA 303          
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Match: A0A061DKV5_THECC (NAD(P)-linked oxidoreductase superfamily protein isoform 3 n=2 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DKV5_THECC)

HSP 1 Score: 74.7 bits (182), Expect = 2.340e-14
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 LATRKPETSGMLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQ-LPKIEPLAAKLKEIG 207
            L  R PE +G+   C+EL + ++AYSP+AQG LTGKY+ + LP+GPR+R++  + L K++PL  ++KEIG
Sbjct:  136 LIYRAPEQNGVKAACDELGITLIAYSPIAQGALTGKYTPENLPTGPRSRIYTPEFLTKLQPLVNRIKEIG 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109939.805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMD5_9PHAE1.340e-3079.17Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A836CJF6_9STRA2.660e-2063.89Aldo/keto reductase family protein n=1 Tax=Tribone... [more]
L1IYR3_GUITC5.850e-1856.52Aldo_ket_red domain-containing protein n=3 Tax=Gem... [more]
A0A1F8RSB6_9CHLR7.250e-1758.332,5-didehydrogluconate reductase n=1 Tax=Chlorofle... [more]
UPI001AC25E541.380e-1554.29Pyridoxine 4-dehydrogenase n=1 Tax=Thermoflexales ... [more]
A0A6U4NZL0_HEMAN2.830e-1553.62Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0VLR8_9CRYP3.640e-1550.72Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6U1LWV5_9CHLO3.750e-1554.67Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
J3MII3_ORYBR1.830e-1449.30Aldo_ket_red domain-containing protein n=12 Tax=Po... [more]
A0A061DKV5_THECC2.340e-1448.57NAD(P)-linked oxidoreductase superfamily protein i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109939contigH-elongata_contig109939:295..1094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1e-19
Seed eggNOG ortholog2880.D8LGX8
KEGG rclassRC00116
KEGG koko:K05275
KEGG ReactionR01708
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
EC1.1.1.65
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionaldo/keto reductase family protein
Ec32 orthologEc-14_001520.1
Exons2
Model size225
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109939.805.1prot_H-elongata_contig109939.805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109939 295..1064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.1392446-CDS-H-elongata_contig109939:294..3881622929626.1392446-CDS-H-elongata_contig109939:294..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109939 295..388 -
1691679096.555112-CDS-H-elongata_contig109939:294..3881691679096.555112-CDS-H-elongata_contig109939:294..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109939 295..388 -
1622929626.1576724-CDS-H-elongata_contig109939:963..10641622929626.1576724-CDS-H-elongata_contig109939:963..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109939 964..1064 -
1691679096.5720525-CDS-H-elongata_contig109939:963..10641691679096.5720525-CDS-H-elongata_contig109939:963..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109939 964..1064 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.1737242-UTR-H-elongata_contig109939:1064..10941622929626.1737242-UTR-H-elongata_contig109939:1064..1094Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109939 1065..1094 -
1691679096.5904145-UTR-H-elongata_contig109939:1064..10941691679096.5904145-UTR-H-elongata_contig109939:1064..1094Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109939 1065..1094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109939.805.1

>prot_H-elongata_contig109939.805.1 ID=prot_H-elongata_contig109939.805.1|Name=mRNA_H-elongata_contig109939.805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MLRVCEELDVRVLAYSPLAQGLLTGKYSSDFLPSGPRARLFKSQLPKIEP
LAAKLKEIGAPRSD*
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mRNA from alignment at H-elongata_contig109939:295..1094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109939.805.1 ID=mRNA_H-elongata_contig109939.805.1|Name=mRNA_H-elongata_contig109939.805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=800bp|location=Sequence derived from alignment at H-elongata_contig109939:295..1094- (Himanthalia elongata Himel1 dioecious)
CTTGCTACCAGGAAGCCTGAGACTAGCGGAATGCTCCGGGTCTGCGAAGA GCTGGACGTGCGGGTGCTGGCCTACAGTCCATTGGCGCAGGGCCTCCTTA CGGGCAAGTACTCGAGCGACTTTCTGCCCAGGTAGGCATATGTGTGTGTG TGTGTGTGTGTGTATGTATTTATTAACTTGTATATAAATAACCGCGCCAT CCGACACTGTCATACTTTTGGTCATTCTGTGCGTATATATGTTTATATGT GGTTATCACACATAGCAGTATAGTATAGTATAGTATAGTATAGATCAACC GGATATGGCCACCAATCCTGCTCCCTAGTGTTCAGCTGAACAGCGAAAAA TATATTTTCCCCGTTCGCGCCTGAGAATTTGGTCTCGCGAGTCGGGTTCA GCAATCCCGTCCCGCGTCAGCCCGCTCAATCTCTCAATCCAGGCTGAATC TGGTGCGTACTCCCGGGATCCTCTTGATCCTCTCGTTTTCCGCGACGATG TTCATCTCTACCGTCACCTGCCATTGGTCAATCCCGAGTTCATCAAGTTA CGTGCATAGTGTTAGCTTGCGTTTTATACATAAAAAAGGATGCACACGCA CCGAAGCCCCCCCCCTCCTGCACCATTTTCACCCCCTCTGCCTCCCCAAG CTAACTTCCCCCGCTCGTCTCCATGCGTCGATCATGTTTATTTTTCTTCA CCCCAGCGGACCTAGAGCCAGGCTATTCAAGAGCCAGCTTCCCAAGATCG AGCCTTTGGCCGCGAAGCTCAAGGAAATCGGAGCCCCCAGGTCGGACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig109939:295..1094-

>mRNA_H-elongata_contig109939.805.1 ID=mRNA_H-elongata_contig109939.805.1|Name=mRNA_H-elongata_contig109939.805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig109939:295..1094- (Himanthalia elongata Himel1 dioecious)
ATGCTCCGGGTCTGCGAAGAGCTGGACGTGCGGGTGCTGGCCTACAGTCC
ATTGGCGCAGGGCCTCCTTACGGGCAAGTACTCGAGCGACTTTCTGCCCA
GATGCTCCGGGTCTGCGAAGAGCTGGACGTGCGGGTGCTGGCCTACAGTC
CATTGGCGCAGGGCCTCCTTACGGGCAAGTACTCGAGCGACTTTCTGCCC
AGCGGACCTAGAGCCAGGCTATTCAAGAGCCAGCTTCCCAAGATCGAGCC
TTTGGCCGCGAAGCTCAAGGAAATCGGAGCCCCCAGGTCGGACTAACGGA
CCTAGAGCCAGGCTATTCAAGAGCCAGCTTCCCAAGATCGAGCCTTTGGC
CGCGAAGCTCAAGGAAATCGGAGCCCCCAGGTCGGACTAA
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