mRNA_H-elongata_contig109932.804.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 299 bits (765), Expect = 1.700e-99 Identity = 140/193 (72.54%), Postives = 163/193 (84.46%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIMGSSDGGSDG 597
+DECG+WVTALCPYGE GCPD+EGDYDIVMPEPMSGTSGSGYKVRVADVDD++S DCSDEFYL+A EAP GD+ GP + VTSP GD A AG+EYTVE+DYDNG+GS V RF+IDLY + GSGDCGT++ LCDKP+IGCKDSMGDYD+ IPED + GMY IRVG FEDD+++ CS EFEI+G+ D DG
Sbjct: 51 EDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDG 243
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 298 bits (764), Expect = 1.850e-99 Identity = 140/183 (76.50%), Postives = 157/183 (85.79%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEI 567
+D+CG+WVTALCPYGE GCPD+EGDYDIVMPEPM GTSGSGYKVRV D+ DEE ADCSDEFYLLAS EAP VGD DGP+LEVTSP GD+A EYTVE+DYDNGVGS VDRF+IDLY +DG GDCGTYV ++CDKP+IGCKDSMGDYD+ IP DTD G YKIRV RFEDD+++ CSG F I
Sbjct: 63 EDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 297 bits (761), Expect = 3.640e-99 Identity = 140/188 (74.47%), Postives = 159/188 (84.57%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIMGSSD 582
+D CG+WVTALCPYGE GCPD+EGDYDIVMPEPMSG S SGYKVRV DV DE+S DCSD FYL+ASE+APD G G L VTSP +GD A AG+EYTVE+DYDNGVGSKVDRFSIDLY++DG GDCGTYV+++CDKPSIGCKDSMGDYD+ IP DT+ G YKIRVGRFED+ ++ CSG F IMG D
Sbjct: 62 EDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDD 249
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 295 bits (755), Expect = 3.180e-98 Identity = 137/188 (72.87%), Postives = 161/188 (85.64%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIMGSSD 582
+DECGEWVTALCPYGE GCPD+EGDYDIVMPEPMSGTSGSGYKVRVADVDDE+S+DCSDEFYL+A +AP D+ GP + VTSP GD A AG+EYTVE+DYDNG+GS V RF+IDLY + GSGDCGT++ LCDKP+IGCKDSMGDYD+ IPED + GMY IRVG FED++++ CS EFEI+G+ D
Sbjct: 64 EDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADD 251
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 300 bits (768), Expect = 5.680e-97 Identity = 147/196 (75.00%), Postives = 160/196 (81.63%), Query Frame = 1
Query: 10 DAW----QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIMGSSDG 585
D W +DECGEWVTALCPYG GCPD+EGDYDIVMPEPMSGTSGSGYKVRVADVD + ADCSDEFYL+AS EAP VG D P L VTSP GD A AG EYTVE+DYDNGVGS+VDRF IDLY G+GDCGT+V NLCDK +IGCKDSMGDYD+ IPE DGMY IRVGRFEDD ++ CSGEFEI+GSS G
Sbjct: 6 DGWDLRVEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSG 201
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 263 bits (672), Expect = 1.050e-85 Identity = 126/185 (68.11%), Postives = 146/185 (78.92%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIMG 573
+DECG+WVTALCPYG+ GCPD++GDYD+VMPEPM GTS SGYKV V D DE CS +F L+AS EAPD D G + VTSP DGD AMAG EYTVE+DYDNG+GS V+RF+IDLY S GSGDCGTYV+ +CDKPSIGCKDS GDYD+ IP T+ GMY IRVG FEDD ++ CS FEI+G
Sbjct: 62 EDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVG 244
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 258 bits (658), Expect = 1.500e-83 Identity = 124/187 (66.31%), Postives = 146/187 (78.07%), Query Frame = 1
Query: 22 DECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIMGSSD 582
D CG+WVTALCPYG GCPDS GDYDI+MPEPMSGTS SGYKV V + +DE CSD+F L+ASE+AP+ G+ G SL VTSP DGD AMAG+ YTVEWDY+NG GS DRF++DLYL G+GDCGTYV+ LCD+PSIGC DS GDYD+ IP DT GMY IRVG F+D+ ++DCS FE+ S D
Sbjct: 63 DVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDD 247
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 253 bits (645), Expect = 1.410e-81 Identity = 125/185 (67.57%), Postives = 144/185 (77.84%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLY-LSDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIM 570
+DECG+WVTALCPYG GCPD++GDYDIVMPEPM+GTS SGYKV V D +DE S CS +F L+AS +AP G+ G SL VTSP DGD AMAG YTVEWDY+NG+GS DRF+IDLY G+GDCGTYV+ LCDKPSIGC DS GDYD+ IP DT GMY +RVG F DD +FDCS FEI+
Sbjct: 62 EDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 249 bits (635), Expect = 6.370e-81 Identity = 121/188 (64.36%), Postives = 145/188 (77.13%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYL-SDGSGDCGTYVSNLCDKPSIGCKDSMGDYDITIPEDTDDGMYKIRVGRFEDDTIFDCSGEFEIMGSS 579
+D+CG+WVTALCPYG GCPD++GDYDIVMPEPM GTS SGYK+ V D +DE S CS +F L+AS +AP G+ G SL V SP DGD+AMAG+ YTVEWDY+NG+GS DRF+IDLY G+GDCGTYV+ LCDKP+IGC DS GDYD+ IP DT GMY +RVG F D+ +FDCS FEI+ S
Sbjct: 2 EDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTS-SGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDS 187
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 246 bits (628), Expect = 3.740e-79 Identity = 114/145 (78.62%), Postives = 129/145 (88.97%), Query Frame = 1
Query: 19 QDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVRVADVDDEESADCSDEFYLLASEEAPDVGDSDGPSLEVTSPDDGDVAMAGDEYTVEWDYDNGVGSKVDRFSIDLYLSDGSGDCGTYVSNLCDKPSIGCKDS 453
+D+CG+WVTALCPYGE GCPD+EGDYDIVMPEPMSGTSGSGYKVRV D+ DEE ADCSDEFYL+AS EAP VGD DGP+LEVTSP GD+A EYTVE+DYDNGVGS+VDRF+IDLY +DG GDCGTYV ++CDKP+IGCKDS
Sbjct: 64 EDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109932.804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig109932.804.1 >prot_H-elongata_contig109932.804.1 ID=prot_H-elongata_contig109932.804.1|Name=mRNA_H-elongata_contig109932.804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp MDHDAWQDECGEWVTALCPYGETGCPDSEGDYDIVMPEPMSGTSGSGYKVback to top mRNA from alignment at H-elongata_contig109932:610..2104+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig109932.804.1 ID=mRNA_H-elongata_contig109932.804.1|Name=mRNA_H-elongata_contig109932.804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1495bp|location=Sequence derived from alignment at H-elongata_contig109932:610..2104+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig109932:610..2104+ >mRNA_H-elongata_contig109932.804.1 ID=mRNA_H-elongata_contig109932.804.1|Name=mRNA_H-elongata_contig109932.804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig109932:610..2104+ (Himanthalia elongata Himel1 dioecious)back to top |