mRNA_H-elongata_contig109892.800.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109892.800.1
Unique NamemRNA_H-elongata_contig109892.800.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.390e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 114
            MSGDL+GSRISLISRKDIRWEGILVQVDRENASVTLQ+
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 38
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.130e-14
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 114
            MSGDL+GSRISLISRKDIRWEGILVQVDRENASVTLQ+
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 38
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.310e-7
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    4 SGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQ 111
            S  LIGSRISLIS+KDIR+EGIL  +D EN+SVTLQ
Sbjct:    3 SQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQ 38
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: W7TTD5_9STRA (Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTD5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.820e-6
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    7 GDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 114
            G LIGS ISL+S KDIR+EG+L  +D+E +SVTLQS
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A4D9D9H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9H3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    7 GDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 114
            G LIGS ISL+S KDIR+EG+L  +D+E +SVTLQS
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A0V0XHR1_TRIPS (Protein LSM14-like protein A n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0XHR1_TRIPS)

HSP 1 Score: 46.2 bits (108), Expect = 1.190e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQSG 117
            M+  L+GS+ISLIS+ +IR+EGIL  VD E +S+ L  G
Sbjct:    1 MNAPLLGSKISLISKSEIRYEGILYTVDPEQSSIALAKG 39
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A6H5L3S6_9PHAE (LSM14 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S6_9PHAE)

HSP 1 Score: 45.4 bits (106), Expect = 3.560e-5
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   13 LIGSRISLISRKDIRWEGILVQVDRENASVTLQSG 117
            L+GSRISLIS+K+IR+EG L  ++  +AS+ LQ+G
Sbjct:   10 LVGSRISLISKKNIRYEGTLYNINTSDASLALQNG 44
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: L5JQY9_PTEAL (Protein LSM14 like protein A n=1 Tax=Pteropus alecto TaxID=9402 RepID=L5JQY9_PTEAL)

HSP 1 Score: 47.0 bits (110), Expect = 4.120e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   16 IGSRISLISRKDIRWEGILVQVDRENASVTLQSGEP 123
            IGS+ISLIS+ +IR+EGIL  +D EN++V L  G P
Sbjct:    8 IGSKISLISKAEIRYEGILYTIDTENSTVALAKGTP 43
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A8J6DXJ6_GALPY (Protein LSM14 A n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6DXJ6_GALPY)

HSP 1 Score: 47.0 bits (110), Expect = 4.930e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   16 IGSRISLISRKDIRWEGILVQVDRENASVTLQSGEP 123
            IGS+ISLIS+ +IR+EGIL  +D EN++V L  G P
Sbjct:    8 IGSKISLISKAEIRYEGILYTIDTENSTVALAKGTP 43
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BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 47.4 bits (111), Expect = 6.930e-5
Identity = 19/38 (50.00%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 114
            M+  L+G RISL+S+K+IR+EG+L  ++ +NA+V LQ+
Sbjct:    1 MTNPLLGKRISLVSKKNIRYEGVLYSINEQNATVALQN 38
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FK17_ECTSI7.390e-1594.74Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE1.130e-1494.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C876_9STRA3.310e-775.00Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
W7TTD5_9STRA1.820e-666.67Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gadi... [more]
A0A4D9D9H3_9STRA2.230e-666.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0V0XHR1_TRIPS1.190e-553.85Protein LSM14-like protein A n=1 Tax=Trichinella p... [more]
A0A6H5L3S6_9PHAE3.560e-557.14LSM14 domain-containing protein n=1 Tax=Ectocarpus... [more]
L5JQY9_PTEAL4.120e-558.33Protein LSM14 like protein A n=1 Tax=Pteropus alec... [more]
A0A8J6DXJ6_GALPY4.930e-558.33Protein LSM14 A n=1 Tax=Galemys pyrenaicus TaxID=2... [more]
A0A1Z5JPN3_FISSO6.930e-550.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109892contigH-elongata_contig109892:1784..1915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D7FK17
Preferred nameLSM14A
KEGG koko:K18749
GOsGO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG1073@1,KOG1073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.6236866-CDS-H-elongata_contig109892:1783..19151622929625.6236866-CDS-H-elongata_contig109892:1783..1915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109892 1784..1915 +
1691679096.4110951-CDS-H-elongata_contig109892:1783..19151691679096.4110951-CDS-H-elongata_contig109892:1783..1915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109892 1784..1915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109892.800.1prot_H-elongata_contig109892.800.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109892 1784..1915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109892.800.1

>prot_H-elongata_contig109892.800.1 ID=prot_H-elongata_contig109892.800.1|Name=mRNA_H-elongata_contig109892.800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQSGEPSS*
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mRNA from alignment at H-elongata_contig109892:1784..1915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109892.800.1 ID=mRNA_H-elongata_contig109892.800.1|Name=mRNA_H-elongata_contig109892.800.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig109892:1784..1915+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGGCGATCTGATAGGAAGCCGTATCAGCCTCATCTCGAGGAAGGA
CATACGCTGGGAAGGAATCCTCGTCCAAGTCGATCGGGAGAATGCATCCG
TCACCCTCCAGAGCGGTGAGCCATCATCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig109892:1784..1915+

>mRNA_H-elongata_contig109892.800.1 ID=mRNA_H-elongata_contig109892.800.1|Name=mRNA_H-elongata_contig109892.800.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig109892:1784..1915+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGGCGATCTGATAGGAAGCCGTATCAGCCTCATCTCGAGGAAGGA
CATACGCTGGGAAGGAATCCTCGTCCAAGTCGATCGGGAGAATGCATCCG
TCACCCTCCAGAGCGGTGAGCCATCATCATAAATGTCGGGCGATCTGATA
GGAAGCCGTATCAGCCTCATCTCGAGGAAGGACATACGCTGGGAAGGAAT
CCTCGTCCAAGTCGATCGGGAGAATGCATCCGTCACCCTCCAGAGCGGTG
AGCCATCATCATAA
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