mRNA_H-elongata_contig109878.798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109878.798.1
Unique NamemRNA_H-elongata_contig109878.798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 5.170e-48
Identity = 84/151 (55.63%), Postives = 103/151 (68.21%), Query Frame = 1 
Query:   10 DNFSWAAMPTSGVLAENQEVTIRFWGSPPPPQDPTIPSAVYNGEISAAFHVLSRTAEAGSTTVSSAKYYVATFYYCEAGAFWNGEKCVLCVELASAMVDGVDSLECDMPGVTLVTLPLAAGYWRGDVNSTNVEPCLLDDACKGGRGIVSSN 462
            DNF+W A+P SG L   QEVTI+  G+PPPP DP+ P AVYNGE++A F V++RTA A S   S A     TFYYC AG++W+GE CV C E+   M DG DSLEC +PGVTL TLPLA GYWRGD+  T +  C    AC GG G+ +S+
Sbjct:  895 DNFAWTAVPWSGYLVRGQEVTIQLVGTPPPPPDPSAPFAVYNGEVAAKFRVVTRTAAADSVATSVATEVERTFYYCAAGSYWHGEACVACAEV---MADGEDSLECSVPGVTLDTLPLAEGYWRGDITQTYIRECWNPSACAGGTGVNASS 1042
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BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.550e-46
Identity = 79/153 (51.63%), Postives = 102/153 (66.67%), Query Frame = 1 
Query:   10 DNFSWAAMPTSGVLAENQEVTIRFWGSPPPPQDPTIPSAVYNGEISAAFHVLSRTAEAGSTTVSSAKYYVATFYYCEAGAFWNGEKCVLCVELASAMVDGVDSLECDMPGVTLVTLPLAAGYWRGDVNSTNVEPCLLDDACKGGRGIVSSNST 468
            D F+W A+P SG L   QEVTI+  G+PPPP DP+   AVYNGE++A F V++RTA A S   S A     TFYYC AG++W+GE CV C +  + M DG  SL+C  PG+TL TLPLA GYWRGD+  T +  C    AC GG G+++S+S+
Sbjct:  896 DYFTWTAVPWSGYLVRGQEVTIQLVGTPPPPPDPSAVFAVYNGEVAAEFRVVTRTAAADSAAASVAAGVERTFYYCAAGSYWDGETCVTCAQAMATMADGEGSLDCSAPGITLDTLPLAEGYWRGDITQTYIRKCWNPSACAGGTGVITSSSS 1048
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BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Match: A0A835YMX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.690e-6
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:  235 CEAGAFWNGEKCVLCVELASAMVDGVDSLECDMPGVTLVTLPLAAGYWRGDVN--STNVEPCLLDDACKGG 441
            C+ G +   ++CV C           + L+C +PGVT+ TLPL  G+WRG++     ++ PC   DAC GG
Sbjct:  807 CQKGNYMGADQCVTC---------DTEVLDCQVPGVTIKTLPLRKGWWRGNLTLAQADILPCWNADACIGG 868
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTT7_ECTSI5.170e-4855.63Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JUJ2_9PHAE1.550e-4651.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMX7_9STRA7.690e-636.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109878contigH-elongata_contig109878:127..906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D8LRF9
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size470
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109878.798.1prot_H-elongata_contig109878.798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109878 127..876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.5545213-CDS-H-elongata_contig109878:126..2241622929625.5545213-CDS-H-elongata_contig109878:126..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109878 127..224 -
1691679096.3819308-CDS-H-elongata_contig109878:126..2241691679096.3819308-CDS-H-elongata_contig109878:126..224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109878 127..224 -
1622929625.5704758-CDS-H-elongata_contig109878:536..8761622929625.5704758-CDS-H-elongata_contig109878:536..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109878 537..876 -
1691679096.3924708-CDS-H-elongata_contig109878:536..8761691679096.3924708-CDS-H-elongata_contig109878:536..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109878 537..876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.5849414-UTR-H-elongata_contig109878:876..9061622929625.5849414-UTR-H-elongata_contig109878:876..906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109878 877..906 -
1691679096.3997755-UTR-H-elongata_contig109878:876..9061691679096.3997755-UTR-H-elongata_contig109878:876..906Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109878 877..906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109878.798.1

>prot_H-elongata_contig109878.798.1 ID=prot_H-elongata_contig109878.798.1|Name=mRNA_H-elongata_contig109878.798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MPTSGVLAENQEVTIRFWGSPPPPQDPTIPSAVYNGEISAAFHVLSRTAE
AGSTTVSSAKYYVATFYYCEAGAFWNGEKCVLCVELASAMVDGVDSLECD
MPGVTLVTLPLAAGYWRGDVNSTNVEPCLLDDACKGGRGIVSSNST
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mRNA from alignment at H-elongata_contig109878:127..906-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109878.798.1 ID=mRNA_H-elongata_contig109878.798.1|Name=mRNA_H-elongata_contig109878.798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig109878:127..906- (Himanthalia elongata Himel1 dioecious)
GTTTCGTCTGATAACTTCTCTTGGGCCGCAATGCCGACATCCGGCGTCTT
GGCGGAGAATCAGGAGGTGACGATACGATTTTGGGGCTCTCCTCCTCCGC
CGCAGGATCCAACTATACCTTCGGCGGTTTATAACGGAGAGATATCCGCG
GCGTTCCACGTGTTGTCACGCACGGCGGAGGCCGGATCGACAACGGTGTC
GAGTGCCAAGTATTATGTTGCCACCTTCTACTATTGTGAAGCTGGGGCTT
TCTGGAACGGAGAAAAATGCGTATTATGCGTCGAGTTGGCGTCAGCCATG
GTGGATGGCGTCGACTCCCTTGAGTGCGATATGCCGGGAGTTACGCTGGT
GACGCTTCCGCTGGCGGCAGGTGCGACTGTGAATCTGACTGCGCTACCTG
TTCATTTGTACCTTCCTCCATAATATTTTGTTACCATTGCAAGAACTCCA
GCTGTTCATCGTTGGCATCCCCCCCCCCCCCGTTGGACAATACTTCCCTT
GAGACGATTGTTGACCTTCTCAAAGGTTTTCGATAATCAATTGATATTAT
TGTCGTTTTAGGGTGCTATGTGTGTACGATTGACGCAAACACGTCGTGCT
CAATGTAAATATCGTTAGGTATCACTTTTCCGATATCTTTGTTAGATTGC
GCCCCCTCAATACCCCCAATGCATGTATCAAGGCTACTGGAGAGGCGACG
TAAACAGCACGAACGTTGAGCCATGCCTGCTCGACGACGCCTGCAAGGGT
GGGAGAGGAATTGTCTCTTCCAACTCAACC
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Coding sequence (CDS) from alignment at H-elongata_contig109878:127..906-

>mRNA_H-elongata_contig109878.798.1 ID=mRNA_H-elongata_contig109878.798.1|Name=mRNA_H-elongata_contig109878.798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig109878:127..906- (Himanthalia elongata Himel1 dioecious)
ATGCCGACATCCGGCGTCTTGGCGGAGAATCAGGAGGTGACGATACGATT
TTGGGGCTCTCCTCCTCCGCCGCAGGATCCAACTATACCTTCGGCGGTTT
ATAACGGAGAGATATCCGCGGCGTTCCACGTGTTGTCACGCACGGCGGAG
GCCGGATCGACAACGGTGTCGAGTGCCAAGTATTATGTTGCCACCTTCTA
CTATTGTGAAGCTGGGGCTTTCTGGAACGGAGAAAAATGCGTATTATGCG
TCGAGTTGGCGTCAGCCATGGTGGATGGCGTCGACTCCCTTGAGTGCGAT
ATGCCGGGAGTTACGCTGGTGACGCTTCCGCTGGCGGCAGATGCCGACAT
CCGGCGTCTTGGCGGAGAATCAGGAGGTGACGATACGATTTTGGGGCTCT
CCTCCTCCGCCGCAGGATCCAACTATACCTTCGGCGGTTTATAACGGAGA
GATATCCGCGGCGTTCCACGTGTTGTCACGCACGGCGGAGGCCGGATCGA
CAACGGTGTCGAGTGCCAAGTATTATGTTGCCACCTTCTACTATTGTGAA
GCTGGGGCTTTCTGGAACGGAGAAAAATGCGTATTATGCGTCGAGTTGGC
GTCAGCCATGGTGGATGGCGTCGACTCCCTTGAGTGCGATATGCCGGGAG
TTACGCTGGTGACGCTTCCGCTGGCGGCAGGCTACTGGAGAGGCGACGTA
AACAGCACGAACGTTGAGCCATGCCTGCTCGACGACGCCTGCAAGGGTGG
GAGAGGAATTGTCTCTTCCAACTCAACCGCTACTGGAGAGGCGACGTAAA
CAGCACGAACGTTGAGCCATGCCTGCTCGACGACGCCTGCAAGGGTGGGA
GAGGAATTGTCTCTTCCAACTCAACC
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