mRNA_H-elongata_contig10985.795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10985.795.1
Unique NamemRNA_H-elongata_contig10985.795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10985.795.1 vs. uniprot
Match: D8LG94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG94_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 7.680e-33
Identity = 120/255 (47.06%), Postives = 143/255 (56.08%), Query Frame = 1 
Query:   58 AADGDASIKARGESIRSRERRERLELEAKEWPKLGAVTEHEKRED-------LADLHASMLRAAKDPMPFMAVEGNRLREKKG---------GRRYSSHIAVGDKVDARFGGGAESFPAVVTKTFQGGLLNLLYDDGERESRVPLSLVRMRGRG-----DSSDGTGSDTELDPNVGPNGAVRRFTGAASSAHPGARTSGGDRRDGWKVMMQKPKKNSKERXXXXXXXXXXXXXXXXXXXXXXXXVAAREALRKKL 759
            AA GDA+    GE   S+ RR + +L+A+EWP LG   +HE +E        LA LHA ML+AA+      +   N+    K           RR S  I VGD+V+ RF  GAE FPAVVTK   GG +NLLYDDGERE+RVPL+LVR RG       DS  G  SD                 GA +   P A+     + DGW+VM+QKPKK   ER      XXXXXXXXXXXXXXXXX +AAREALRKKL
Sbjct:   64 AAAGDAAPGRAGEDGSSQNRRAKHQLDAQEWPTLGETPQHEAQEXXXXXXXXLAALHAEMLKAARSHAGGSSSSDNKGMAGKAMAAGDGRESARRNSGRIGVGDRVEGRFEAGAEWFPAVVTKLLHGGFVNLLYDDGERETRVPLALVRHRGATAAMTMDSDSGDSSDE----------------GAEAPRLPTAKQRS-KQADGWEVMVQKPKKTRVERVESRIEXXXXXXXXXXXXXXXXXELAAREALRKKL 301
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BLAST of mRNA_H-elongata_contig10985.795.1 vs. uniprot
Match: A0A1V9YSA0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YSA0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.030e-5
Identity = 26/74 (35.14%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  277 KKGGRRYSSHIAVGDKVDARFGGGAESFPAVVTKTFQGGLLNLLYDDGERESRVPLSLVRMRGRGDSSDGTGSD 498
            K G  + ++ + VG KV+AR+ G ++ +P  + K    G  ++ YDDGE+E R+ + L+R+ G    +DG+G+D
Sbjct:  319 KMGSPKKNTALKVGTKVEARYKGKSKYYPGKIAKAHSDGSYDIDYDDGEKEKRIEMDLIRVLGG--ENDGSGND 390
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10985.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG94_ECTSI7.680e-3347.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9YSA0_9STRA9.030e-535.14Uncharacterized protein (Fragment) n=1 Tax=Achlya ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10985contigH-elongata_contig10985:4761..7751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1372
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10985.795.1prot_H-elongata_contig10985.795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10985 5540..7141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.1635764-UTR-H-elongata_contig10985:4760..49401622929625.1635764-UTR-H-elongata_contig10985:4760..4940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10985 4761..4940 +
1691679096.196125-UTR-H-elongata_contig10985:4760..49401691679096.196125-UTR-H-elongata_contig10985:4760..4940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10985 4761..4940 +
1622929625.1780686-UTR-H-elongata_contig10985:5506..55391622929625.1780686-UTR-H-elongata_contig10985:5506..5539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10985 5507..5539 +
1691679096.2060783-UTR-H-elongata_contig10985:5506..55391691679096.2060783-UTR-H-elongata_contig10985:5506..5539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10985 5507..5539 +
1622929625.2419574-UTR-H-elongata_contig10985:7141..77511622929625.2419574-UTR-H-elongata_contig10985:7141..7751Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10985 7142..7751 +
1691679096.26251-UTR-H-elongata_contig10985:7141..77511691679096.26251-UTR-H-elongata_contig10985:7141..7751Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10985 7142..7751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.1952016-CDS-H-elongata_contig10985:5539..57041622929625.1952016-CDS-H-elongata_contig10985:5539..5704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10985 5540..5704 +
1691679096.2276664-CDS-H-elongata_contig10985:5539..57041691679096.2276664-CDS-H-elongata_contig10985:5539..5704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10985 5540..5704 +
1622929625.2114244-CDS-H-elongata_contig10985:6250..64871622929625.2114244-CDS-H-elongata_contig10985:6250..6487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10985 6251..6487 +
1691679096.2388906-CDS-H-elongata_contig10985:6250..64871691679096.2388906-CDS-H-elongata_contig10985:6250..6487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10985 6251..6487 +
1622929625.2262053-CDS-H-elongata_contig10985:6994..71411622929625.2262053-CDS-H-elongata_contig10985:6994..7141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10985 6995..7141 +
1691679096.2479904-CDS-H-elongata_contig10985:6994..71411691679096.2479904-CDS-H-elongata_contig10985:6994..7141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10985 6995..7141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10985.795.1

>prot_H-elongata_contig10985.795.1 ID=prot_H-elongata_contig10985.795.1|Name=mRNA_H-elongata_contig10985.795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
MLRAAKDPMPFMAVEGNRLREKKGGRRYSSHIAVGDKVDARFGGGAESFP
AVVTKTFQGGLLNLLYDDGERESRVPLSLVRMRGRGDSSDGTGSDTELDP
NVGPNGAVRRFTGAASSAHPGARTSGGDRRDGWKVMMQKPKKNSKERAEA
RVEASSNAKNRLKRQKKREKEVAAREALRKKL*
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mRNA from alignment at H-elongata_contig10985:4761..7751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10985.795.1 ID=mRNA_H-elongata_contig10985.795.1|Name=mRNA_H-elongata_contig10985.795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2991bp|location=Sequence derived from alignment at H-elongata_contig10985:4761..7751+ (Himanthalia elongata Himel1 dioecious)
GGAGGAAAGAAGTCGGAGAATAATCGACAGCCGGTGGTCAATTCCAGCAC
AACACATGCAGCTGACGGAGACGCCAGCATCAAGGCGAGAGGTGAATCGA
TACGATCTCGCGAGAGGAGAGAGAGGCTAGAGCTGGAAGCCAAGGAGTGG
CCGAAACTCGGTGCGGTAACGGAACATGAGGTGCGGTAACGGTTACCGGT
CGGCGCTTATGAGAACACCAGCACACCATTAACTGCTATACAACACATGT
TATTGTGGAGGTGCTATACAATCATTACAATCATTATGCCACCACATGCT
TCTCGTGTTGATCTTGAATGGCTTTCAAGGTAGCTCTCTTGGGTGCACAG
CCGGCTGAGCTGCTACTGCCTGCAAGCATCGTTCCGTGCCATTTTCCCCG
TCCCTCGAGCTGGAGCACGCAAACCAGACACACAAGAGTTTGTATACCAT
TTATAGACTGTATATGTCAATATAAAGTACCTGTGTAACAAGGCAGTCTG
TCGAGGTTCTGTACTGCATATACATGAGATATGATATATTTGGTTCGATT
ATATACAGTATTATATATTAATAATTCGCTTGGCACTGTTTTGGTCGGAA
CTGTGGAACTGTGGAACTGTGGAGGGTTAGGCATCGTGACATCATGGTGC
CGTCATGGTGCCATAAAGCCGTTCTCGTTTCCATCTCTTTACGCAATCGT
ATCGTATCGTACAAAAATGTTTTGAAAATTATGTTCCGTACTGAAGAAAA
GGGAGGACCTCGCGGATCTTCACGCTTCAATGTTACGAGCCGCCAAGGAT
CCGATGCCCTTCATGGCTGTAGAAGGCAACCGGCTCCGGGAAAAGAAGGG
AGGTAGACGCTACAGCAGCCACATCGCCGTGGGCGACAAGGTGGATGCAC
GCTTCGGGGGAGGCGCAGAATCCTTCCCAGCGGTGGTAACAAAGGTCCGC
CGAGCAGTCACAGTACACACGCATGCTTCATGTTTGATGGGAAACTGTGT
GTATGCGTGTGTGTGCATGTTATCCTATCCCATTTATTCTGGACGTCAGA
TTTGTGGACGATACACTACACTCCACTACACTACACTGCACTACACTCCA
CTGCACTACACTACTAGTTGTTGGGCCTGATGTGAGAAAAAATCCAAGTT
CTTGTGACTGCGCCGAGATTCGAACTCACGTTCCAACGTCAGAATGTTTC
GGAGTTACCAACTGAACCACCGGGGTGTATCCAAGGCTGGTTGGGTGTGC
ATGCTTGCGCTTGGTTTCGCTGACTGTACTGGCTTTCGCCTGACGAGTCT
GGCAATATCTCTGCATCAGATTTTAGGACTAAACCAAACTCAAAGAGTTG
CTTAATCCTAACCTTTAGGACTCAAAATGTCCCTGACGTGGGGCAGGTGT
TCGGCCCCTGAACTGAACAACCTGACCGCTGGATGGCATGCGCTCTATGA
TGCTGTATTGACCTGTGTGATATTATCCGCCGCCCTCCAGACATTCCAAG
GTGGCCTTCTGAATCTACTCTACGACGACGGAGAGAGAGAAAGCAGGGTG
CCTCTGTCCCTCGTGCGAATGCGCGGGCGAGGAGATTCGTCGGACGGGAC
CGGATCCGATACCGAATTGGATCCAAACGTTGGCCCTAACGGCGCGGTAC
GCAGGTTTACGGGAGCTGCCAGCAGTGCCCACCCCGGGGCTAGGACTTCG
GGTGGCGATCGAAGGGACGGATGGAAGGTAGGAGGTCGAGACGAATGGTC
GATTTTTGTTTCACGACATGATAACTCCTCACCTATGGACATCGAAGATA
ATCGATAATCGATAATCGCGCATAGTGTGAGTGCAAAATTCCACCAAAAC
CACGCGTGTTTACCTTGTTGGTATTCTAAATGCATCTGTATGTATTTATG
GTGACGACGTCATCACATTTAGCAAAGTAAGGATCAACCGGATTTGGTTT
ATTTCTGGTCGTGGTCAGCTGAACAGAAAAAATAATTTTCCCTTTCCACG
TTCGCGCCTGAGATTTTGGTCTCGCGAGACGGGTTCAGCAGTCCCGTCCC
GCGTCAGCCTGCTCATTCTCTCAACTCAGGCTAAATACGGTACGAGCCTT
TAGTATGTGTTGATGTATGATGTATGATGTATGATGTATTTACTTAGCTA
CCTTCTCAACGCCGCCATTACGATCGCCATTACGACCGCCATTACGATCG
CCATTACGATCGCCATTACGATTTGGTCCTTCAGGTGATGATGCAGAAGC
CAAAAAAGAACTCAAAGGAGCGCGCCGAAGCCCGCGTGGAAGCTAGTTCC
AACGCGAAAAACCGTTTGAAACGGCAGAAAAAGCGGGAGAAAGAGGTCGC
AGCGAGGGAGGCGTTGCGAAAGAAGCTCTGAAAGAATGGAAACGATTTTA
GACTATCCTCTTTAAATAGGGCGCTGTAGGACGACTACTGTATCCTATTT
GAGCACCACAGCTATGCTGGAGGAAAAAATTCCGAAATTTCTCTGCGGGG
ATTGGGGGGAGTGGCTGCGATATATACGATAGATGCAAGGGACGACCCAT
GGCACTAGTAACATAGCTTGTAGCGGGAACGGGAATTCCGCCCCGCTCCG
AATTTGAGAAATGCGTCTCCGTTCCGTCTAAAATTCGTTTTCCCAACTAT
CGGCGACTGGAGTCCTATACCGTCCCGTCCCGTTAGAGCCTTTTAATAGA
GATTTCCGTCTAATGTGGTATGGATTATCTTGGGACTGCAGATTCCTGTT
CATTTCTGTTCTTCTTTCCCTACAGTATAAGGACAGTATAAGGACAGTAT
CCCTACAGTATAAGGAGTGGGAAGTTCTTGACGGTTAGGGCTCGACATAC
ATGCCCCTGTCTTGATGACTTCACGATGAGTCAGCCATGGATGAAAGAAA
GACCAGGGTGGGACCCTCTTAGACCAAGTTGGGACATCCGACTGTGACAG
GAAATCATGACAGTGTAATAGCTTTATAGTGTAACAGTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig10985:4761..7751+

>mRNA_H-elongata_contig10985.795.1 ID=mRNA_H-elongata_contig10985.795.1|Name=mRNA_H-elongata_contig10985.795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig10985:4761..7751+ (Himanthalia elongata Himel1 dioecious)
ATGTTACGAGCCGCCAAGGATCCGATGCCCTTCATGGCTGTAGAAGGCAA
CCGGCTCCGGGAAAAGAAGGGAGGTAGACGCTACAGCAGCCACATCGCCG
TGGGCGACAAGGTGGATGCACGCTTCGGGGGAGGCGCAGAATCCTTCCCA
GCGGTGGTAACAAAGATGTTACGAGCCGCCAAGGATCCGATGCCCTTCAT
GGCTGTAGAAGGCAACCGGCTCCGGGAAAAGAAGGGAGGTAGACGCTACA
GCAGCCACATCGCCGTGGGCGACAAGGTGGATGCACGCTTCGGGGGAGGC
GCAGAATCCTTCCCAGCGGTGGTAACAAAGACATTCCAAGGTGGCCTTCT
GAATCTACTCTACGACGACGGAGAGAGAGAAAGCAGGGTGCCTCTGTCCC
TCGTGCGAATGCGCGGGCGAGGAGATTCGTCGGACGGGACCGGATCCGAT
ACCGAATTGGATCCAAACGTTGGCCCTAACGGCGCGGTACGCAGGTTTAC
GGGAGCTGCCAGCAGTGCCCACCCCGGGGCTAGGACTTCGGGTGGCGATC
GAAGGGACGGATGGAAGACATTCCAAGGTGGCCTTCTGAATCTACTCTAC
GACGACGGAGAGAGAGAAAGCAGGGTGCCTCTGTCCCTCGTGCGAATGCG
CGGGCGAGGAGATTCGTCGGACGGGACCGGATCCGATACCGAATTGGATC
CAAACGTTGGCCCTAACGGCGCGGTACGCAGGTTTACGGGAGCTGCCAGC
AGTGCCCACCCCGGGGCTAGGACTTCGGGTGGCGATCGAAGGGACGGATG
GAAGGTGATGATGCAGAAGCCAAAAAAGAACTCAAAGGAGCGCGCCGAAG
CCCGCGTGGAAGCTAGTTCCAACGCGAAAAACCGTTTGAAACGGCAGAAA
AAGCGGGAGAAAGAGGTCGCAGCGAGGGAGGCGTTGCGAAAGAAGCTCTG
AGTGATGATGCAGAAGCCAAAAAAGAACTCAAAGGAGCGCGCCGAAGCCC
GCGTGGAAGCTAGTTCCAACGCGAAAAACCGTTTGAAACGGCAGAAAAAG
CGGGAGAAAGAGGTCGCAGCGAGGGAGGCGTTGCGAAAGAAGCTCTGA
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