mRNA_H-elongata_contig109779.789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109779.789.1
Unique NamemRNA_H-elongata_contig109779.789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: D7G0Z8_ECTSI (Pribosyltran domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z8_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 2.430e-71
Identity = 108/117 (92.31%), Postives = 114/117 (97.44%), Query Frame = 1
Query:    1 NENRRSQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            +++RRSQHRYQI+AAEAMEG+  RLEELHPDRFRFHKTSW KFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERV+KEGQV
Sbjct:   18 HKSRRSQHRYQILAAEAMEGLGERLEELHPDRFRFHKTSWGKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVVKEGQV 134          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A7S2I9D5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I9D5_9STRA)

HSP 1 Score: 183 bits (465), Expect = 3.450e-55
Identity = 86/114 (75.44%), Postives = 100/114 (87.72%), Query Frame = 1
Query:   10 RRSQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            +R   +YQI++AEA E MA+R+EE +PDRF FH T W KFPDGTDNIEIGGF P+N++SGEHVLFLASFHNN+V+LSQFQVMICLLQ F+ESLTVVLPYYP GTM+RV KEGQV
Sbjct:    8 KRQSKQYQIISAEACESMAKRMEEEYPDRFTFHPTKWGKFPDGTDNIEIGGFLPHNLLSGEHVLFLASFHNNEVSLSQFQVMICLLQSFIESLTVVLPYYPVGTMDRVTKEGQV 121          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A835YPL2_9STRA (Phosphoribosyltransferase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL2_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.490e-55
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 1
Query:    1 NENRRSQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            ++++R+  RYQI+AA+AME MAR LE  +P RFRFH T+W KFPDGTD IEIGGFTP+NVISGEHVLFL SFHNNDVTLSQFQVMI LLQ FVE LTVVLPYYPTGTMERV +EGQV
Sbjct:   17 HKSKRTSKRYQIIAAKAMEPMARLLEANYPARFRFHPTAWGKFPDGTDCIEIGGFTPHNVISGEHVLFLGSFHNNDVTLSQFQVMIALLQNFVEDLTVVLPYYPTGTMERVTREGQV 133          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A7S0GEW9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEW9_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.010e-54
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 1
Query:   28 YQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            Y+I+AA+  E MA ++EE++PDRF FHKTSW KFPDGTDNIEIGGFTP+N+ISGEHVLFLASFHNND TLSQFQVMICLLQ F+ESLTVVLPYYP GTMERV KEG V
Sbjct:   84 YRIIAADEHESMAGKMEEIYPDRFTFHKTSWGKFPDGTDNIEIGGFTPHNLISGEHVLFLASFHNNDSTLSQFQVMICLLQSFIESLTVVLPYYPVGTMERVTKEGIV 191          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A7S4R782_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R782_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.200e-53
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    7 NRRSQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            ++R   +Y+I++AEA E MA+R+EE HPDRF FH T W+KFPDGTDNIEIGGF P+N++SGEHVLFLASFHNNDVT+SQFQV+I LLQ FVESLT+VLPYYP GTMERV KEG V
Sbjct:   63 SKRQSMQYRIISAEACETMAKRIEEAHPDRFTFHPTKWSKFPDGTDNIEIGGFHPHNLLSGEHVLFLASFHNNDVTMSQFQVIIVLLQSFVESLTIVLPYYPVGTMERVTKEGTV 177          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A7S3DQJ1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQJ1_9STRA)

HSP 1 Score: 178 bits (452), Expect = 2.600e-52
Identity = 86/114 (75.44%), Postives = 97/114 (85.09%), Query Frame = 1
Query:   10 RRSQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            RR    YQI+AA+  E MA+R+EE +PDRF FH T W KFPDGTD IEIGGF P+N++SGEHVLFLASFHNNDVTLSQFQVMICLLQ F+ESLTVVLP+ P GTMERVI+EGQV
Sbjct:   84 RRESIHYQIIAAKETEAMAKRMEESYPDRFTFHPTQWEKFPDGTDQIEIGGFYPHNLLSGEHVLFLASFHNNDVTLSQFQVMICLLQSFIESLTVVLPFSPVGTMERVIREGQV 197          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A7S2R758_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R758_9STRA)

HSP 1 Score: 176 bits (446), Expect = 8.470e-52
Identity = 83/112 (74.11%), Postives = 95/112 (84.82%), Query Frame = 1
Query:   16 SQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            S+ RYQI++AE  E MA  LE  +P+RF FHKTSW KFPDGTDNIE+GGFTP+NVI+GE VLFLASFHNNDVTLSQFQVM+ LLQ F++ L VVLPYYP GTMER +KEGQV
Sbjct:   64 SRKRYQIISAEIWEDMALNLEATYPERFHFHKTSWGKFPDGTDNIEVGGFTPHNVIAGERVLFLASFHNNDVTLSQFQVMVMLLQSFIDELVVVLPYYPVGTMERTVKEGQV 175          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: W7TDA8_9STRA (Phosphoribosyltransferase n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDA8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.420e-51
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1
Query:   19 QHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            + RYQI+AA   E MARRL+  +P+RFRFH T W KFPDGTDNIE+GGF P+NV++GEHVLFLASFHNNDVTLSQFQVM+ LLQ F+ESLT+VLP+YP GTMERV KEGQV
Sbjct:  122 ERRYQIIAAPVCEPMARRLQIQYPERFRFHPTYWGKFPDGTDNIEVGGFQPHNVMAGEHVLFLASFHNNDVTLSQFQVMVMLLQSFIESLTIVLPFYPVGTMERVSKEGQV 232          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A7S2UY42_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY42_9STRA)

HSP 1 Score: 173 bits (438), Expect = 6.270e-51
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 1
Query:   13 RSQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            R   RYQI+AA+A E +A +LE  +P+ FRFH T W KFPDGTD IE+GGF P NVISG HVLFLASFHNNDVTLSQFQVM+ LLQ FVESLTVVLPYYPTGTMERV +EGQV
Sbjct:   30 RENRRYQIIAAKAFEELAEQLERNYPNEFRFHPTLWDKFPDGTDKIEVGGFQPNNVISGSHVLFLASFHNNDVTLSQFQVMVMLLQSFVESLTVVLPYYPTGTMERVTQEGQV 142          
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Match: A0A7S1ZH29_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZH29_TRICV)

HSP 1 Score: 169 bits (427), Expect = 6.070e-50
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 1
Query:   64 ARRLEELHPDRFRFHKTSWAKFPDGTDNIEIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVLPYYPTGTMERVIKEGQV 351
            A+R+EE +PDRF FH T W KFPDGTD+IEIGGFTP+N++SGEHVLFLASFHNNDVTLSQFQVMICLLQ FVESLTVVLPYYP GTMERV KEG V
Sbjct:    1 AQRMEENYPDRFSFHPTKWGKFPDGTDSIEIGGFTPHNLLSGEHVLFLASFHNNDVTLSQFQVMICLLQSFVESLTVVLPYYPVGTMERVTKEGTV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109779.789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Z8_ECTSI2.430e-7192.31Pribosyltran domain-containing protein n=1 Tax=Ect... [more]
A0A7S2I9D5_9STRA3.450e-5575.44Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A835YPL2_9STRA4.490e-5577.78Phosphoribosyltransferase-like protein n=1 Tax=Tri... [more]
A0A7S0GEW9_9STRA2.010e-5480.56Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4R782_9STRA3.200e-5373.91Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S3DQJ1_9STRA2.600e-5275.44Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2R758_9STRA8.470e-5274.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TDA8_9STRA4.420e-5174.77Phosphoribosyltransferase n=3 Tax=Nannochloropsis ... [more]
A0A7S2UY42_9STRA6.270e-5175.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZH29_TRICV6.070e-5083.33Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109779contigH-elongata_contig109779:78..1273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue9.4e-56
Seed eggNOG ortholog2880.D7G0Z8
EggNOG free text desc.ribose phosphate diphosphokinase activity
EggNOG OGsCOG0462@1,KOG1448@2759
Ec32 ortholog descriptionPhosphoribosyltransferase-like
Ec32 orthologEc-23_003970.1
COG Functional cat.EF
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109779.789.1prot_H-elongata_contig109779.789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109779 78..1273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.2692728-CDS-H-elongata_contig109779:77..1791622929624.2692728-CDS-H-elongata_contig109779:77..179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109779 78..179 -
1691679095.9056423-CDS-H-elongata_contig109779:77..1791691679095.9056423-CDS-H-elongata_contig109779:77..179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109779 78..179 -
1622929624.2874086-CDS-H-elongata_contig109779:585..6811622929624.2874086-CDS-H-elongata_contig109779:585..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109779 586..681 -
1691679095.9146276-CDS-H-elongata_contig109779:585..6811691679095.9146276-CDS-H-elongata_contig109779:585..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109779 586..681 -
1622929624.3056488-CDS-H-elongata_contig109779:1120..12731622929624.3056488-CDS-H-elongata_contig109779:1120..1273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109779 1121..1273 -
1691679095.9277596-CDS-H-elongata_contig109779:1120..12731691679095.9277596-CDS-H-elongata_contig109779:1120..1273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109779 1121..1273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109779.789.1

>prot_H-elongata_contig109779.789.1 ID=prot_H-elongata_contig109779.789.1|Name=mRNA_H-elongata_contig109779.789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
NENRRSQHRYQIVAAEAMEGMARRLEELHPDRFRFHKTSWAKFPDGTDNI
EIGGFTPYNVISGEHVLFLASFHNNDVTLSQFQVMICLLQYFVESLTVVL
PYYPTGTMERVIKEGQV
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mRNA from alignment at H-elongata_contig109779:78..1273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109779.789.1 ID=mRNA_H-elongata_contig109779.789.1|Name=mRNA_H-elongata_contig109779.789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1196bp|location=Sequence derived from alignment at H-elongata_contig109779:78..1273- (Himanthalia elongata Himel1 dioecious)
AATGAAAATAGACGGAGCCAGCACCGTTATCAGATCGTAGCGGCTGAGGC CATGGAGGGTATGGCTCGCCGTCTCGAGGAGCTCCACCCGGATCGCTTTC GGTTCCACAAAACAAGCTGGGCGAAGTTTCCGGACGGGACGGACAACATC GAGGTACACGGACGCATAATATAAAAGGCGGAGGAAAAAAAAGTAAAGTA AAGCGTTCTTGTATCGTATCTTATACAGTATGATTTGTGTTTTTGTTTGC TCGTGGCGGTTTTGATCACCGTCGATGGCGATGTCGTGTTGCGCGCGTAG ATGGTTGTTGATGGCGTACGGCAGGTGTGTGTGTGTGTGTGTGTGTGTGC ATCGAATGTAGTCTAGTCCTTTGTGCAGTTGGTAGCTCCACCAGCACGCG TACATTTAGGTGTTGCGGATGTCCGCTTGGTATCCTTCAAGTGTTGTTTA AACCGCACCGTTTTCGTGGCGGGCAACAGAGGCGTTACTCCCTTCAATTT TTCTTCGGCTCCCCCCTCCTCGGTCGCCCGATCCGTCCGCCTCTTTCGTC TTTTTATGACATATCTAAAACATGAATCCCGGTAAAGCAAAGATCGGCGG CTTCACGCCTTACAATGTTATCTCAGGCGAACACGTGCTCTTCCTGGCGT CGTTTCACAACAATGACGTCACTCTTAGCCAGTTTCAGGTAAACGCTAGT CACGCGCGGAGAGGGGGGTACAAGACATAAGAGGGAGGGATAGCGCCCGC TGTGTGCGCTCCGCCCTTAAGCATGCAGCAAGCGCTTTTCGATGCGCTAC ATCCTGCTGGATCTACCAAAAATACAAACCAAAAAAATGGTGCCGCTCGC CCCGCCCCTCAAGTACTTGATTTGAGATAGGGTAGCCGCTGTAGCTTTCT CCGCCCGCCCTCGGCGCGATTTCGTTTTGCGTCGTTGGTCGAAACTAGAC AAACTGTTTTTTTCGCTGTTCCACCGTGAACACTACCGCTGGTGTTCGTT GATATACATACACCTTGATGTACCAGCATTTGTTCCCTCCAAGAGAGAGA AAAGGCCGGAGTAAAATATTGCATCGGCGCTGATGCTTCTTCAGGTGATG ATTTGCCTCCTCCAATACTTCGTGGAGTCCCTCACGGTGGTGCTTCCTTA CTATCCCACTGGCACGATGGAAAGGGTCATCAAGGAGGGGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig109779:78..1273-

>mRNA_H-elongata_contig109779.789.1 ID=mRNA_H-elongata_contig109779.789.1|Name=mRNA_H-elongata_contig109779.789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig109779:78..1273- (Himanthalia elongata Himel1 dioecious)
AATGAAAATAGACGGAGCCAGCACCGTTATCAGATCGTAGCGGCTGAGGC
CATGGAGGGTATGGCTCGCCGTCTCGAGGAGCTCCACCCGGATCGCTTTC
GGTTCCACAAAACAAGCTGGGCGAAGTTTCCGGACGGGACGGACAACATC
GAGAATGAAAATAGACGGAGCCAGCACCGTTATCAGATCGTAGCGGCTGA
GGCCATGGAGGGTATGGCTCGCCGTCTCGAGGAGCTCCACCCGGATCGCT
TTCGGTTCCACAAAACAAGCTGGGCGAAGTTTCCGGACGGGACGGACAAC
ATCGAGATCGGCGGCTTCACGCCTTACAATGTTATCTCAGGCGAACACGT
GCTCTTCCTGGCGTCGTTTCACAACAATGACGTCACTCTTAGCCAGTTTC
AGATCGGCGGCTTCACGCCTTACAATGTTATCTCAGGCGAACACGTGCTC
TTCCTGGCGTCGTTTCACAACAATGACGTCACTCTTAGCCAGTTTCAGGT
GATGATTTGCCTCCTCCAATACTTCGTGGAGTCCCTCACGGTGGTGCTTC
CTTACTATCCCACTGGCACGATGGAAAGGGTCATCAAGGAGGGGCAGGTG
GTGATGATTTGCCTCCTCCAATACTTCGTGGAGTCCCTCACGGTGGTGCT
TCCTTACTATCCCACTGGCACGATGGAAAGGGTCATCAAGGAGGGGCAGG
TG
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