mRNA_H-elongata_contig109749.783.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109749.783.1
Unique NamemRNA_H-elongata_contig109749.783.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109749.783.1 vs. uniprot
Match: D7FHB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB8_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.990e-15
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    7 VRLCEKRDVEKWLTTKALKANGLWRLGKFDEGLRLCFEV 123
            VRLCEKRDVE+WLTTKALKANGLWRLGK+DE L LC +V
Sbjct:   32 VRLCEKRDVERWLTTKALKANGLWRLGKYDEALELCLDV 70
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BLAST of mRNA_H-elongata_contig109749.783.1 vs. uniprot
Match: A0A6H5L125_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L125_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.450e-15
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    7 VRLCEKRDVEKWLTTKALKANGLWRLGKFDEGLRLCFEV 123
            VRLCEKRDVE+WLTTKALKANGLWRLGK+DE L LC  V
Sbjct:   28 VRLCEKRDVERWLTTKALKANGLWRLGKYDEALELCLHV 66
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BLAST of mRNA_H-elongata_contig109749.783.1 vs. uniprot
Match: W7T2L8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2L8_9STRA)

HSP 1 Score: 45.8 bits (107), Expect = 2.750e-5
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 LQVRLCEKRDVEKWLTTKALKANGLWRLGKFDEGLRLCFEV 123
            + ++LC K+D+E+W   K LKA+ L R+G+ +E L LC EV
Sbjct:   24 MAIKLCGKKDMERWDIVKTLKAHALERMGRVEEALDLCREV 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109749.783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHB8_ECTSI3.990e-1584.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L125_9PHAE7.450e-1584.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7T2L8_9STRA2.750e-546.34Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109749contigH-elongata_contig109749:2056..2178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1e-12
Seed eggNOG ortholog2880.D7FHB8
Preferred nameNAA25
KEGG koko:K17973
GOsGO:0000001,GO:0000003,GO:0000278,GO:0000281,GO:0000323,GO:0000902,GO:0000904,GO:0000910,GO:0000912,GO:0000915,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005794,GO:0005829,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0006911,GO:0006928,GO:0006935,GO:0006955,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007409,GO:0007411,GO:0008092,GO:0008150,GO:0008152,GO:0008154,GO:0009605,GO:0009653,GO:0009888,GO:0009987,GO:0010324,GO:0010467,GO:0010591,GO:0010592,GO:0010631,GO:0010941,GO:0012505,GO:0016043,GO:0016192,GO:0016477,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0019953,GO:0022008,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030042,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030707,GO:0030855,GO:0030865,GO:0030866,GO:0031032,GO:0031175,GO:0031248,GO:0031252,GO:0031344,GO:0031346,GO:0031365,GO:0031414,GO:0031416,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033267,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043523,GO:0043524,GO:0043543,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044703,GO:0044837,GO:0044877,GO:0048308,GO:0048311,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051261,GO:0051301,GO:0051493,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051704,GO:0060429,GO:0060491,GO:0060548,GO:0061024,GO:0061564,GO:0061640,GO:0065007,GO:0071704,GO:0071840,GO:0090130,GO:0090132,GO:0090723,GO:0097374,GO:0097435,GO:0097458,GO:0097485,GO:0098657,GO:0099024,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0150034,GO:1901214,GO:1901215,GO:1901564,GO:1902407,GO:1902410,GO:1902493,GO:1902494,GO:1902743,GO:1902745,GO:1903047,GO:1903475,GO:1990234,GO:1990761
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG2053@1,KOG2053@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929623.7166066-CDS-H-elongata_contig109749:2055..21781622929623.7166066-CDS-H-elongata_contig109749:2055..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109749 2056..2178 -
1691679095.6742857-CDS-H-elongata_contig109749:2055..21781691679095.6742857-CDS-H-elongata_contig109749:2055..2178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109749 2056..2178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109749.783.1prot_H-elongata_contig109749.783.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109749 2056..2178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109749.783.1

>prot_H-elongata_contig109749.783.1 ID=prot_H-elongata_contig109749.783.1|Name=mRNA_H-elongata_contig109749.783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
LQVRLCEKRDVEKWLTTKALKANGLWRLGKFDEGLRLCFEV
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mRNA from alignment at H-elongata_contig109749:2056..2178-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109749.783.1 ID=mRNA_H-elongata_contig109749.783.1|Name=mRNA_H-elongata_contig109749.783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig109749:2056..2178- (Himanthalia elongata Himel1 dioecious)
CTTCAGGTTCGACTCTGCGAAAAGCGGGACGTTGAAAAATGGCTGACGAC
CAAGGCCCTCAAGGCCAACGGTCTGTGGAGGCTCGGAAAGTTCGACGAGG
GGCTCCGCCTCTGCTTTGAAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig109749:2056..2178-

>mRNA_H-elongata_contig109749.783.1 ID=mRNA_H-elongata_contig109749.783.1|Name=mRNA_H-elongata_contig109749.783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig109749:2056..2178- (Himanthalia elongata Himel1 dioecious)
CTTCAGGTTCGACTCTGCGAAAAGCGGGACGTTGAAAAATGGCTGACGAC
CAAGGCCCTCAAGGCCAACGGTCTGTGGAGGCTCGGAAAGTTCGACGAGG
GGCTCCGCCTCTGCTTTGAAGTGCTTCAGGTTCGACTCTGCGAAAAGCGG
GACGTTGAAAAATGGCTGACGACCAAGGCCCTCAAGGCCAACGGTCTGTG
GAGGCTCGGAAAGTTCGACGAGGGGCTCCGCCTCTGCTTTGAAGTG
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