mRNA_H-elongata_contig109620.779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109620.779.1
Unique NamemRNA_H-elongata_contig109620.779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: D7FZ00_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ00_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 8.550e-21
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 PSDAIHFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            P DA HFPG GYTV +HYVGKLE D +VFDSS  R  PL CK+G+GQLIRG
Sbjct:   23 PGDATHFPGKGYTVSVHYVGKLETDHSVFDSSHARHAPLQCKIGLGQLIRG 73          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: A0A0B7NMV8_9FUNG (Peptidylprolyl isomerase n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NMV8_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 1.650e-10
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1
Query:    7 DAIHFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            D  H P  G  + +HYVG LE D TVFDSSR R+ P  CK+GV Q+I+G
Sbjct:   12 DGEHVPKKGDEITIHYVGTLE-DGTVFDSSRNRREPFKCKIGVKQVIQG 59          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: A0A7S1XVX2_9STRA (Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVX2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.990e-10
Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 PSDAIHFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            P DA+HFP  G TVR+HY GKLE D T FDSSR+R       VG G +I G
Sbjct:   72 PGDAVHFPSQGQTVRIHYEGKLE-DGTEFDSSRKRGRAFEFLVGSGMVIPG 121          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: A0A7Z2RDT8_9PSED (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pseudomonas TaxID=286 RepID=A0A7Z2RDT8_9PSED)

HSP 1 Score: 59.3 bits (142), Expect = 5.120e-10
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 PSDAIHFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            P D ++FP  G  V LHY+G L  D  VFDS+R+R +PL  ++GVGQ+I G
Sbjct:   13 PGDGVNFPSAGDIVTLHYIGTL-TDGKVFDSTRDRNSPLTMRIGVGQVIIG 62          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: H2AXQ7_KAZAF (Peptidylprolyl isomerase n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AXQ7_KAZAF)

HSP 1 Score: 57.4 bits (137), Expect = 5.490e-9
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   28 NGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            NG TV +HY GKLE    VFDSS ER+ PL  ++GVGQ+IRG
Sbjct:   50 NGDTVVVHYTGKLEESDEVFDSSYEREKPLTFQLGVGQVIRG 91          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: A0A1A8X228_9APIC (Peptidylprolyl isomerase n=4 Tax=Plasmodium ovale TaxID=36330 RepID=A0A1A8X228_9APIC)

HSP 1 Score: 57.4 bits (137), Expect = 2.690e-8
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   16 HFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            + P  G  V +HYVGKLE+D TVFDSSR+R  P    +G G++I+G
Sbjct:   32 NIPKKGNEVTVHYVGKLESDGTVFDSSRDRNVPFKFHLGQGEVIKG 77          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: W6L5C4_9TRYP (Peptidylprolyl isomerase n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6L5C4_9TRYP)

HSP 1 Score: 55.1 bits (131), Expect = 1.980e-7
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   22 PGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            P +G  V +HYVG+LE+D +VFDSSRER  P    +G GQ+I+G
Sbjct:   55 PVSGAKVIVHYVGRLESDGSVFDSSRERGEPFEFTLGKGQVIKG 98          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: A0A077TRZ2_PLACH (Peptidylprolyl isomerase n=12 Tax=Plasmodium (Vinckeia) TaxID=418101 RepID=A0A077TRZ2_PLACH)

HSP 1 Score: 54.7 bits (130), Expect = 2.500e-7
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   16 HFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            + P  G  V +HYVGKLE+D ++FDSSR+R  P    +G G++I+G
Sbjct:   32 NIPKKGNEVTVHYVGKLESDGSIFDSSRQRDVPFKFHLGNGEVIKG 77          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: K6UF11_PLACD (Peptidylprolyl isomerase n=14 Tax=Plasmodium TaxID=5820 RepID=K6UF11_PLACD)

HSP 1 Score: 53.9 bits (128), Expect = 4.700e-7
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   16 HFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            + P  G  V +HYVGKLE +  VFDSSRER  P    +G G++I+G
Sbjct:   30 YIPKKGNEVTVHYVGKLERNGKVFDSSRERNVPFKFHLGQGEVIKG 75          
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Match: A0A1G2M458_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_01_FULL_46_22b TaxID=1802301 RepID=A0A1G2M458_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 5.320e-7
Identity = 26/41 (63.41%), Postives = 26/41 (63.41%), Query Frame = 1
Query:   31 GYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIRG 153
            G T  LHYVGKL AD T FDSS ER  PL    G GQLI G
Sbjct:   45 GKTAALHYVGKLAADGTQFDSSLERSQPLVFVFGQGQLIAG 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109620.779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FZ00_ECTSI8.550e-2170.59Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A0B7NMV8_9FUNG1.650e-1055.10Peptidylprolyl isomerase n=1 Tax=Parasitella paras... [more]
A0A7S1XVX2_9STRA2.990e-1056.86Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva ... [more]
A0A7Z2RDT8_9PSED5.120e-1050.98Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pseudo... [more]
H2AXQ7_KAZAF5.490e-961.90Peptidylprolyl isomerase n=1 Tax=Kazachstania afri... [more]
A0A1A8X228_9APIC2.690e-852.17Peptidylprolyl isomerase n=4 Tax=Plasmodium ovale ... [more]
W6L5C4_9TRYP1.980e-754.55Peptidylprolyl isomerase n=1 Tax=Phytomonas sp. is... [more]
A0A077TRZ2_PLACH2.500e-747.83Peptidylprolyl isomerase n=12 Tax=Plasmodium (Vinc... [more]
K6UF11_PLACD4.700e-750.00Peptidylprolyl isomerase n=14 Tax=Plasmodium TaxID... [more]
A0A1G2M458_9BACT5.320e-763.41Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109620contigH-elongata_contig109620:1769..2107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FZ00
KEGG koko:K09568
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-06_002180.1
Exons2
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929623.191973-CDS-H-elongata_contig109620:1768..18311622929623.191973-CDS-H-elongata_contig109620:1768..1831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109620 1769..1831 +
1691679095.4881158-CDS-H-elongata_contig109620:1768..18311691679095.4881158-CDS-H-elongata_contig109620:1768..1831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109620 1769..1831 +
1622929623.2070613-CDS-H-elongata_contig109620:2011..21071622929623.2070613-CDS-H-elongata_contig109620:2011..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109620 2012..2107 +
1691679095.5107543-CDS-H-elongata_contig109620:2011..21071691679095.5107543-CDS-H-elongata_contig109620:2011..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109620 2012..2107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109620.779.1prot_H-elongata_contig109620.779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109620 1769..2107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109620.779.1

>prot_H-elongata_contig109620.779.1 ID=prot_H-elongata_contig109620.779.1|Name=mRNA_H-elongata_contig109620.779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
PSDAIHFPGNGYTVRLHYVGKLEADQTVFDSSRERKTPLHCKVGVGQLIR
GE*
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mRNA from alignment at H-elongata_contig109620:1769..2107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109620.779.1 ID=mRNA_H-elongata_contig109620.779.1|Name=mRNA_H-elongata_contig109620.779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig109620:1769..2107+ (Himanthalia elongata Himel1 dioecious)
CCCAGTGATGCCATTCATTTTCCCGGCAATGGCTACACCGTCCGCCTTCA CTATGTTGGCAAGGTCAGTGATGATATTCTCAATCCTACGATTAGTGGCT GCTGCGAGGATGGAACGTGAAATATATTATGATTTGTTCCCTACTTCGTA GTTCGTAGATGGACTAGTTTTAGAGACTGAGCCTAGACGTACGTGCGGCG CGCACCTCCCGAACCGCGCTGCTTCGTTGGGCTCTCTGCGAAGTTAGAAG CGGATCAGACGGTTTTCGATTCCAGTCGGGAGAGGAAGACGCCGCTACAT TGTAAGGTTGGAGTCGGACAACTCATTCGCGGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig109620:1769..2107+

>mRNA_H-elongata_contig109620.779.1 ID=mRNA_H-elongata_contig109620.779.1|Name=mRNA_H-elongata_contig109620.779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig109620:1769..2107+ (Himanthalia elongata Himel1 dioecious)
CCCAGTGATGCCATTCATTTTCCCGGCAATGGCTACACCGTCCGCCTTCA
CTATGTTGGCAAGCCCAGTGATGCCATTCATTTTCCCGGCAATGGCTACA
CCGTCCGCCTTCACTATGTTGGCAAGTTAGAAGCGGATCAGACGGTTTTC
GATTCCAGTCGGGAGAGGAAGACGCCGCTACATTGTAAGGTTGGAGTCGG
ACAACTCATTCGCGGTGAGTGATTAGAAGCGGATCAGACGGTTTTCGATT
CCAGTCGGGAGAGGAAGACGCCGCTACATTGTAAGGTTGGAGTCGGACAA
CTCATTCGCGGTGAGTGA
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