mRNA_H-elongata_contig109603.776.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A6H5LD75_9PHAE (GDP-mannose 4,6-dehydratase n=6 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5LD75_9PHAE) HSP 1 Score: 448 bits (1152), Expect = 5.990e-157 Identity = 213/223 (95.52%), Postives = 219/223 (98.21%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGEGVEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDAGNEHL 687
QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTI+LGNLDAKRDWGHA+DYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVG EITWVGEGVEEYGH K DPENV+V+VDPRYFRPTEVELLLGDCTKAKKELGWVPEISF ELVKDMMK+DIA+VDAGNEHL
Sbjct: 140 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIYLGNLDAKRDWGHAKDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGTEITWVGEGVEEYGHAKGDPENVLVKVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFTELVKDMMKADIAYVDAGNEHL 362
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A8J2SRK3_9STRA (GDP-mannose 4,6-dehydratase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRK3_9STRA) HSP 1 Score: 349 bits (896), Expect = 2.650e-117 Identity = 164/218 (75.23%), Postives = 190/218 (87.16%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGEG--VEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHV 666
QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQ+ YWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARI +GK KT++LGNLDAKRDWGHARDY++GMWLMVQRDEP DYVLSTGECHSVKEF E +F VG+ + W G V+E G DP V+V+VDP+YFRPTEV+LL+GDC+KAKK LGW P+++F+ L ++M+ +D+A +
Sbjct: 187 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQYAYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARISQGKMKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDEPDDYVLSTGECHSVKEFCEVAFARVGITVQWKGAAGSVDEIGVDATDPSRVLVKVDPKYFRPTEVDLLVGDCSKAKKLLGWAPKVTFKALAEEMVDADLAEL 404
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A4D9D4U1_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4U1_9STRA) HSP 1 Score: 347 bits (891), Expect = 6.540e-117 Identity = 160/222 (72.07%), Postives = 195/222 (87.84%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGE--GVEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDAGN 678
QASTSELYGKVQE+PQ ETTPFYPRSPYGVAKQ+ YW+L+NYREAY M L NGILFNHESPRRGPTFVTRKITRAVARI +G QKT++LGNLDAKRDWGHARDY++GMW+M+Q D P D+VL+TGE H V+EFVE++F++VGME+ W GE V E G+ K DPE+V+V++DP+YFRPTEVELLLGD KAKK +GW PE+SF++LVK+M+++DIA V+ G+
Sbjct: 163 QASTSELYGKVQEVPQSETTPFYPRSPYGVAKQYAYWILVNYREAYDMFLVNGILFNHESPRRGPTFVTRKITRAVARIQKGLQKTLYLGNLDAKRDWGHARDYVRGMWMMLQHDTPDDFVLATGETHPVREFVEKAFRHVGMEVEWKGEKGSVHEVGYNKADPEHVLVKIDPQYFRPTEVELLLGDPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGD 384
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: K0T9K6_THAOC (GDP-mannose 4,6-dehydratase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9K6_THAOC) HSP 1 Score: 330 bits (846), Expect = 3.990e-112 Identity = 158/218 (72.48%), Postives = 184/218 (84.40%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGEG--VEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHV 666
QASTSELYGKVQE+PQ ETTPFYPRSPY VAKQ+ +W+L+NYREAYGMHLTNGILFNHESPRRG TFVTRKIT AVARI +G +KT++LGN+DAKRDWGHARDY+KGMW+M+Q D P DYVL+TGE H+V+EFVE++F VG I W GE V+E G DD V+V++DPRYFRPTEVELLLGD +KAKK LGW E+ FE LVKDMMK+D+A V
Sbjct: 18 QASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAFWILVNYREAYGMHLTNGILFNHESPRRGATFVTRKITIAVARISQGLEKTLYLGNIDAKRDWGHARDYVKGMWMMLQHDVPDDYVLATGETHTVREFVEKAFAEVGTTIKWKGETGTVDEIGVDADDESRVLVKIDPRYFRPTEVELLLGDPSKAKKTLGWEAELGFEGLVKDMMKADLAMV 235
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A7S2GBW7_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBW7_9STRA) HSP 1 Score: 333 bits (853), Expect = 3.440e-111 Identity = 157/222 (70.72%), Postives = 187/222 (84.23%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGE--GVEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDAGN 678
QASTSELYGKVQEIPQ ETTPFYPRSPYGVAKQ+ YWM++NYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAV RI +G Q +FLGN+D++RDWGHARDY+KGMWLMVQRDEP D+VL+T ECHSV+EFVE++F+ V M+I W GE V+E G D +V++D +YFRPTEV+LL+GD KAKK LGW PEI+F+ LV +MM+ D+ V+AG+
Sbjct: 160 QASTSELYGKVQEIPQTETTPFYPRSPYGVAKQYAYWMIVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVCRISKGLQDILFLGNIDSQRDWGHARDYVKGMWLMVQRDEPEDFVLATNECHSVREFVEKAFEAVDMKIKWTGEKGSVDEVGVDASDESRALVKIDLQYFRPTEVDLLIGDPAKAKKLLGWEPEITFDGLVTEMMEEDMKLVEAGD 381
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: F0YLN7_AURAN (GDP-mannose 4,6-dehydratase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLN7_AURAN) HSP 1 Score: 332 bits (851), Expect = 4.250e-111 Identity = 155/220 (70.45%), Postives = 188/220 (85.45%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGEG--VEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDA 672
QASTSELYGKVQ IPQ ETTPFYPRSPYGVAKQ+ YWML+NYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAV RI +QKT++LGNLDAKRDWGHARDY++GMWLMVQRD P DYVL+TGECHSV+EFVE SF++VG+++ W GE EE G D + +V+VDP+Y+RPTEV+LL+GD KA+++LGW P+I+F++L +M+ +D+A + A
Sbjct: 143 QASTSELYGKVQAIPQTETTPFYPRSPYGVAKQYAYWMLVNYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVVRIKAQQQKTLYLGNLDAKRDWGHARDYVEGMWLMVQRDVPDDYVLATGECHSVREFVEVSFEHVGIKVKWTGEPGTAEEVGVDAADESHELVKVDPKYYRPTEVDLLVGDAAKARRDLGWKPKITFKKLATEMVDADMAELKA 362
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A835Z0Z6_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Z6_9STRA) HSP 1 Score: 330 bits (847), Expect = 1.410e-110 Identity = 154/221 (69.68%), Postives = 187/221 (84.62%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGE--GVEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDAG 675
QASTSELYGKVQEIPQ ETTPFYPRSPYGVAKQ+ +WM++NYREAYGM L+NGILFNHESPRRGPTFVTRKITRAV RIHR +Q+ ++LGNL+++RDWGHARDY++GMW+M+Q+D P D+VL+TGE HSVKEFVE SF YVG + W GE V+E+G D V+V+VDP YFRPTEV+LL+G KAK+ LGW P+I+F+ LV+DMMK+D+A VD G
Sbjct: 137 QASTSELYGKVQEIPQTETTPFYPRSPYGVAKQYAFWMIVNYREAYGMFLSNGILFNHESPRRGPTFVTRKITRAVCRIHRQRQECLYLGNLESQRDWGHARDYVEGMWMMLQQDTPDDFVLATGEMHSVKEFVEASFAYVGTTVAWKGERGSVDEHGVDAADESRVLVKVDPSYFRPTEVDLLIGSPAKAKRVLGWSPKITFKALVEDMMKADLAEVDTG 357
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A7S2XZ47_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ47_9STRA) HSP 1 Score: 328 bits (841), Expect = 1.590e-109 Identity = 150/221 (67.87%), Postives = 189/221 (85.52%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRD-EPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGEGVEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDAGN 678
QASTSELYGKVQEIPQ E TPFYPRSPYGVAKQF +WML+NYREAY MH NGILFNHESPRRGPTFVTRK+TRAVARIH+G Q+ + LGNLD++RDWGHARDY++GMW+M+QRD E DYVL+TGECHSV+EFVE++F Y+G+ + W G GV+E G + + V+V+++PRYFRPTEV+LL+GD +KAK LGW P+++F+ LV++MM++DI V+ G+
Sbjct: 150 QASTSELYGKVQEIPQTEKTPFYPRSPYGVAKQFSFWMLVNYREAYNMHCINGILFNHESPRRGPTFVTRKVTRAVARIHKGLQQDLQLGNLDSQRDWGHARDYVEGMWMMMQRDGEAEDYVLATGECHSVREFVEKAFHYIGITLGWRGSGVDEVGFDSANEDRVLVKINPRYFRPTEVDLLVGDASKAKNLLGWSPKVTFQALVEEMMQADIDKVEKGD 370
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A7S2VZB8_9STRA (GDP-mannose 4,6-dehydratase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZB8_9STRA) HSP 1 Score: 327 bits (839), Expect = 1.840e-109 Identity = 153/224 (68.30%), Postives = 187/224 (83.48%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGE--GVEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDAGNEH 684
QASTSELYGKVQE+PQ ETTPFYPRSPY VAKQ+ +W+L+NYREAYGM+ TNGILFNHESPRRG TFVTRK+TR VA IH K+K +FLGN+DAKRDWGHARDY++GMWLM+Q+++P DYVL+TGE H+V+EFVE++F VG+ I W G V+E G KDD V+V++DPRYFRPTEVELLLGD TKAKKELGW +F+ELVK+M++ D+ +GNE+
Sbjct: 133 QASTSELYGKVQEVPQSETTPFYPRSPYAVAKQYAFWILVNYREAYGMYCTNGILFNHESPRRGNTFVTRKVTRCVANIHLKKEKCLFLGNIDAKRDWGHARDYVEGMWLMLQQEKPDDYVLATGETHTVREFVEKAFAVVGISIVWKGAFGTVDETGVDKDDESRVLVKIDPRYFRPTEVELLLGDPTKAKKELGWTATTTFDELVKEMVQEDLKLFKSGNEN 356
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Match: A0A482T0S9_9ARCH (GDP-mannose 4,6-dehydratase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T0S9_9ARCH) HSP 1 Score: 320 bits (821), Expect = 3.700e-108 Identity = 150/224 (66.96%), Postives = 184/224 (82.14%), Query Frame = 1
Query: 19 QASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREAYGMHLTNGILFNHESPRRGPTFVTRKITRAVARIHRGKQKTIFLGNLDAKRDWGHARDYIKGMWLMVQRDEPSDYVLSTGECHSVKEFVEESFKYVGMEITWVGEG--VEEYGHVKDDPENVVVRVDPRYFRPTEVELLLGDCTKAKKELGWVPEISFEELVKDMMKSDIAHVDAGNEH 684
QASTSELYGKV+EIPQ E TPFYPRSPYGVAKQ+ YW+++NYREAYGMH TNGILFNHESPRRGPTFVTRKITRAVA+IHRG QKT++LGNLDAKRDWGHA+DY++GMW M+Q ++ DYVL+T E HSV+EF+E++F ++G EI W+GE V+E G D V+V+VDPRYFRPTEV++L+G+ KA K LGW P F +LVK+M+ +DIA +D H
Sbjct: 33 QASTSELYGKVREIPQTEDTPFYPRSPYGVAKQYAYWIVVNYREAYGMHATNGILFNHESPRRGPTFVTRKITRAVAKIHRGLQKTLYLGNLDAKRDWGHAKDYVEGMWRMLQTEQGDDYVLATNETHSVREFIEKAFGHIGTEIKWIGERGTVDETGVDAKDESRVLVKVDPRYFRPTEVDILIGNPAKATKALGWKPTTLFGDLVKEMVDADIAALDNPGSH 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109603.776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig109603.776.1 >prot_H-elongata_contig109603.776.1 ID=prot_H-elongata_contig109603.776.1|Name=mRNA_H-elongata_contig109603.776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp MSPPSDQASTSELYGKVQEIPQKETTPFYPRSPYGVAKQFGYWMLINYREback to top mRNA from alignment at H-elongata_contig109603:95..1506+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig109603.776.1 ID=mRNA_H-elongata_contig109603.776.1|Name=mRNA_H-elongata_contig109603.776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1412bp|location=Sequence derived from alignment at H-elongata_contig109603:95..1506+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig109603:95..1506+ >mRNA_H-elongata_contig109603.776.1 ID=mRNA_H-elongata_contig109603.776.1|Name=mRNA_H-elongata_contig109603.776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig109603:95..1506+ (Himanthalia elongata Himel1 dioecious)back to top |