mRNA_H-elongata_contig109571.775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109571.775.1
Unique NamemRNA_H-elongata_contig109571.775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A7S2EVH2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVH2_TRICV)

HSP 1 Score: 134 bits (337), Expect = 1.870e-37
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   10 QRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            +R++QLD   TY++TL GHEYV NEDFDKA ACFR AIR+D RHYNAWYGLG+IY RQEKYD+AEYHFRRALSINPQS
Sbjct:   47 RRSVQLDPSFTYSHTLSGHEYVSNEDFDKAAACFRDAIRSDDRHYNAWYGLGAIYFRQEKYDLAEYHFRRALSINPQS 124
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A7S4N5K4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5K4_9STRA)

HSP 1 Score: 131 bits (330), Expect = 7.730e-34
Identity = 57/78 (73.08%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:   10 QRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            +R+++LD   TY++TL GHEYV NEDFDKAV C+R A+R+D RHYNAWYGLG+IY+RQEKYD+AEYHFRRALS+NPQS
Sbjct:  844 RRSVRLDPTFTYSHTLSGHEYVANEDFDKAVQCYRDALRSDGRHYNAWYGLGAIYYRQEKYDLAEYHFRRALSVNPQS 921
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A7S1GJ14_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJ14_CYCTE)

HSP 1 Score: 124 bits (311), Expect = 1.520e-33
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:   10 QRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            +R+IQLD   TY++TL GHE+  NEDF KAVAC+R AIR D RHYNAWYGLG++YHRQEK+D+AEYHF++A  INPQS
Sbjct:   47 RRSIQLDPSFTYSHTLSGHEHYANEDFVKAVACYRDAIRADERHYNAWYGLGTVYHRQEKFDLAEYHFQKACEINPQS 124
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A7S3F8Q8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F8Q8_9VIRI)

HSP 1 Score: 126 bits (317), Expect = 2.430e-33
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 RVAQRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            R  QRA+QL    TYA+TLCGHEY  NED+DK + C+R AIR D RHYNAWYGLG+IY RQEKYD+AE+HFRRAL+INP+S
Sbjct:  148 RFFQRALQLRPGFTYAHTLCGHEYFTNEDYDKGLTCYRGAIRIDARHYNAWYGLGAIYLRQEKYDLAEHHFRRALNINPRS 228
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A061R3K8_9CHLO (Anaphase-promoting complex subunit 3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3K8_9CHLO)

HSP 1 Score: 129 bits (325), Expect = 3.090e-33
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:    1 RVAQRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            R+ QRA+QLD + TYA+TLCGHE++ NEDFDK +AC+R A+R DRRH+NAWYGLG IY RQEKY++AE HFRRAL INP S
Sbjct:  484 RLFQRALQLDPDFTYAHTLCGHEHLANEDFDKGLACYRNAVRIDRRHFNAWYGLGQIYLRQEKYELAENHFRRALHINPSS 564
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: W7T759_9STRA (Tetratricopeptide TPR-1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T759_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.310e-33
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:   10 QRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            QRAI +D    YAYTLCGHEYV N D DKAVAC+R A+R D RHYNAWYGLG+IY RQEKY++AEYHF RALSIN  S
Sbjct:   88 QRAIAVDPSFVYAYTLCGHEYVCNGDLDKAVACYRYALRLDDRHYNAWYGLGTIYFRQEKYELAEYHFSRALSINTAS 165
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A7S4QN69_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QN69_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.990e-33
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   10 QRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDR--RHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            +R+IQ+DS  TY+YTL GHEYV NEDFDKAV+C+R AIRTD   RHYNAWYGLG+IY RQEKYD+AEYHF++AL+INPQS
Sbjct:  808 RRSIQVDSSFTYSYTLSGHEYVSNEDFDKAVSCYRDAIRTDGCGRHYNAWYGLGAIYFRQEKYDLAEYHFQKALTINPQS 887
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A7S2UWI3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWI3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.020e-33
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:   10 QRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            +RAIQ+     YA+TLCGHEYV NEDFD+A+AC+R A+R D+RHYNAWYGLG+IY RQEKY++AEYHFRRAL+I+P S
Sbjct:  141 KRAIQVCPWFYYAHTLCGHEYVANEDFDRAMACYRDALRLDKRHYNAWYGLGTIYQRQEKYELAEYHFRRALAIHPSS 218
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: B8BVV5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVV5_THAPS)

HSP 1 Score: 125 bits (313), Expect = 7.490e-33
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   13 RAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            R+IQLD   TYA+T+CGHEY+ NEDF+KA++C+R AIR D RHYNAWYGLG+IY RQEK+D+AEYHF+RAL IN QS
Sbjct:  156 RSIQLDPTYTYAHTMCGHEYMSNEDFEKAISCYRDAIRVDCRHYNAWYGLGAIYFRQEKFDLAEYHFQRALDINRQS 232
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BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Match: A0A1Z5K6F8_FISSO (Anaphase-promoting complex subunit 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6F8_FISSO)

HSP 1 Score: 125 bits (315), Expect = 6.510e-32
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:   10 QRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNAWYGLGSIYHRQEKYDMAEYHFRRALSINPQS 243
            +R++QLD   TY +TLCG+EY+ NEDF+ A+ACFR AIRT+ RHYNAWYGLG IYHRQEKYD+AEYHF RA  I+P S
Sbjct:  444 KRSLQLDPNFTYTHTLCGYEYMANEDFEPAMACFRQAIRTNERHYNAWYGLGCIYHRQEKYDLAEYHFERACQIHPTS 521
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109571.775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2EVH2_TRICV1.870e-3778.21Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4N5K4_9STRA7.730e-3473.08Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1GJ14_CYCTE1.520e-3369.23Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3F8Q8_9VIRI2.430e-3370.37Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A061R3K8_9CHLO3.090e-3370.37Anaphase-promoting complex subunit 3 n=1 Tax=Tetra... [more]
W7T759_9STRA3.310e-3373.08Tetratricopeptide TPR-1 n=2 Tax=Nannochloropsis ga... [more]
A0A7S4QN69_9STRA4.990e-3375.00Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2UWI3_9STRA6.020e-3370.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8BVV5_THAPS7.490e-3371.43Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5K6F8_FISSO6.510e-3269.23Anaphase-promoting complex subunit 3 n=2 Tax=Fistu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109571contigH-elongata_contig109571:320..1237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.2e-26
Seed eggNOG ortholog35128.Thaps39726
Preferred nameCDC27
KEGG koko:K03350
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000398,GO:0000819,GO:0001775,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007091,GO:0007275,GO:0007338,GO:0007343,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009504,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009896,GO:0009933,GO:0009948,GO:0009949,GO:0009952,GO:0009987,GO:0010014,GO:0010015,GO:0010033,GO:0010071,GO:0010154,GO:0010467,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016567,GO:0016740,GO:0017156,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022622,GO:0030071,GO:0030154,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034641,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0045055,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048316,GO:0048364,GO:0048507,GO:0048508,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048829,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051276,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060467,GO:0060468,GO:0060471,GO:0061458,GO:0061630,GO:0061659,GO:0062033,GO:0065001,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0080154,GO:0090068,GO:0090304,GO:0090421,GO:0097159,GO:0098813,GO:0099402,GO:0140014,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:2000241,GO:2000242,GO:2001252
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs2XCC8@2836,COG0457@1,KOG1126@2759
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929622.5772548-CDS-H-elongata_contig109571:319..4661622929622.5772548-CDS-H-elongata_contig109571:319..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109571 320..466 -
1691679095.327629-CDS-H-elongata_contig109571:319..4661691679095.327629-CDS-H-elongata_contig109571:319..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109571 320..466 -
1622929622.665927-CDS-H-elongata_contig109571:1141..12371622929622.665927-CDS-H-elongata_contig109571:1141..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109571 1142..1237 -
1691679095.341721-CDS-H-elongata_contig109571:1141..12371691679095.341721-CDS-H-elongata_contig109571:1141..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109571 1142..1237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109571.775.1prot_H-elongata_contig109571.775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109571 320..1237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109571.775.1

>prot_H-elongata_contig109571.775.1 ID=prot_H-elongata_contig109571.775.1|Name=mRNA_H-elongata_contig109571.775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
RVAQRAIQLDSEMTYAYTLCGHEYVVNEDFDKAVACFRMAIRTDRRHYNA
WYGLGSIYHRQEKYDMAEYHFRRALSINPQS
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mRNA from alignment at H-elongata_contig109571:320..1237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109571.775.1 ID=mRNA_H-elongata_contig109571.775.1|Name=mRNA_H-elongata_contig109571.775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=918bp|location=Sequence derived from alignment at H-elongata_contig109571:320..1237- (Himanthalia elongata Himel1 dioecious)
CGGGTCGCGCAGAGGGCCATCCAGCTCGATTCAGAGATGACGTACGCCTA
CACGCTGTGTGGCCACGAGTACGTGGTCAACGAAGACTTCGATAAGGTTC
GAGGCGCACGTCCGCAGGGTGGTTCTTTTTGTCGTATTATCGAATTATGC
AGGGTGGTTCTTGTTTTGTGTAGTATGTGGATGGGTAAGTTGCCGTACTT
GACACCTGATTGTGTGTTAATGTATGTTAGTATTTATATATGTCACCTGC
TTGTTCCTAATCATGCTTGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTATTTATTCACCCTTTTGGAACTAGATTTCAATTTTTATATTGAATT
TAGTATGTAAAAAACAGATCGAGGTTCCATACGGGTTAATTTGCACATAA
CGCACAATCCGGCTCTTTCACGCTAGCTCTTCAAGGCTACTCTCCTATTG
ATCCTCCCAATGGGGGTTTCAATAATATTTGCTACAAAAACCTCTATTAA
TGATATTAATGATCAGACGTGACATAGGAGACATACTATATCTACATTTT
GTATCTGAGCCATCAATAATCAATACCTTGCGCTTCCTTTTCTACTTCCT
TGTTGAACGTATAGCATATAGCTTCGGTCGGCCCCTAAAGGACCAACACT
TTCACGTCTACCTTTTTTCTACTGCCACTGTGTGCGTGTAATTACCGTGT
CTTATGTGTAAAATATGTATTGTTCTTTGATGCATGTGTCTGTGGGGTGG
GGATTTTCACTGCCCTGGCAGGCAGTGGCATGCTTTCGCATGGCGATCAG
GACGGACCGCCGCCACTATAATGCCTGGTACGGCCTGGGATCTATTTACC
ACCGCCAGGAGAAGTACGACATGGCCGAGTATCACTTCCGAAGAGCTCTG
AGCATCAACCCGCAGTCC
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Coding sequence (CDS) from alignment at H-elongata_contig109571:320..1237-

>mRNA_H-elongata_contig109571.775.1 ID=mRNA_H-elongata_contig109571.775.1|Name=mRNA_H-elongata_contig109571.775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig109571:320..1237- (Himanthalia elongata Himel1 dioecious)
CGGGTCGCGCAGAGGGCCATCCAGCTCGATTCAGAGATGACGTACGCCTA
CACGCTGTGTGGCCACGAGTACGTGGTCAACGAAGACTTCGATAAGCGGG
TCGCGCAGAGGGCCATCCAGCTCGATTCAGAGATGACGTACGCCTACACG
CTGTGTGGCCACGAGTACGTGGTCAACGAAGACTTCGATAAGGCAGTGGC
ATGCTTTCGCATGGCGATCAGGACGGACCGCCGCCACTATAATGCCTGGT
ACGGCCTGGGATCTATTTACCACCGCCAGGAGAAGTACGACATGGCCGAG
TATCACTTCCGAAGAGCTCTGAGCATCAACCCGCAGTCCGCAGTGGCATG
CTTTCGCATGGCGATCAGGACGGACCGCCGCCACTATAATGCCTGGTACG
GCCTGGGATCTATTTACCACCGCCAGGAGAAGTACGACATGGCCGAGTAT
CACTTCCGAAGAGCTCTGAGCATCAACCCGCAGTCC
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