mRNA_H-elongata_contig109535.773.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109535.773.1
Unique NamemRNA_H-elongata_contig109535.773.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig109535.773.1 vs. uniprot
Match: D7FX97_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX97_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.690e-15
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 CCIFHKKRAFDESDSXXXXXXXXXXXREKRWAQPRPGKPKAHQLYHG 141
            CCIFHKKR FDESDSXXXXXXXXXXX  +RWAQP+PG+PKAHQLYHG
Sbjct:    9 CCIFHKKRNFDESDSXXXXXXXXXXXXXRRWAQPKPGRPKAHQLYHG 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109535.773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX97_ECTSI5.690e-1587.23Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109535contigH-elongata_contig109535:1621..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-26_004070.1
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929622.4886918-CDS-H-elongata_contig109535:1620..17641622929622.4886918-CDS-H-elongata_contig109535:1620..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109535 1621..1764 +
1691679095.2888057-CDS-H-elongata_contig109535:1620..17641691679095.2888057-CDS-H-elongata_contig109535:1620..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109535 1621..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109535.773.1prot_H-elongata_contig109535.773.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109535 1621..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109535.773.1

>prot_H-elongata_contig109535.773.1 ID=prot_H-elongata_contig109535.773.1|Name=mRNA_H-elongata_contig109535.773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
CCIFHKKRAFDESDSDESDSDCDDEEREKRWAQPRPGKPKAHQLYHG*
back to top

mRNA from alignment at H-elongata_contig109535:1621..1764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109535.773.1 ID=mRNA_H-elongata_contig109535.773.1|Name=mRNA_H-elongata_contig109535.773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig109535:1621..1764+ (Himanthalia elongata Himel1 dioecious)
TGCTGTATCTTCCACAAGAAGCGCGCCTTCGACGAGAGCGACAGTGACGA
GAGCGACTCCGACTGTGACGACGAGGAGAGGGAAAAGCGCTGGGCGCAGC
CCAGGCCGGGGAAGCCAAAGGCCCACCAGCTCTACCACGGCTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109535:1621..1764+

>mRNA_H-elongata_contig109535.773.1 ID=mRNA_H-elongata_contig109535.773.1|Name=mRNA_H-elongata_contig109535.773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig109535:1621..1764+ (Himanthalia elongata Himel1 dioecious)
TGCTGTATCTTCCACAAGAAGCGCGCCTTCGACGAGAGCGACAGTGACGA
GAGCGACTCCGACTGTGACGACGAGGAGAGGGAAAAGCGCTGGGCGCAGC
CCAGGCCGGGGAAGCCAAAGGCCCACCAGCTCTACCACGGCTGATGCTGT
ATCTTCCACAAGAAGCGCGCCTTCGACGAGAGCGACAGTGACGAGAGCGA
CTCCGACTGTGACGACGAGGAGAGGGAAAAGCGCTGGGCGCAGCCCAGGC
CGGGGAAGCCAAAGGCCCACCAGCTCTACCACGGCTGA
back to top