mRNA_H-elongata_contig109469.768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109469.768.1
Unique NamemRNA_H-elongata_contig109469.768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: D7FPS7_ECTSI (Phosphoserine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS7_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.930e-38
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
            R QAVCFDVDSTVIAEEGID LADFCGA++ VADLT RAMGGSMPFQDALKARLDLM PS++ V+LC+ EHPPRLSPG
Sbjct:   71 RAQAVCFDVDSTVIAEEGIDVLADFCGAAEAVADLTSRAMGGSMPFQDALKARLDLMTPSQKVVDLCLREHPPRLSPG 148          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: A0A835ZG36_9STRA (Phosphoserine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG36_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.530e-28
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    7 QAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
            QAVCFDVDSTV  EEGID LA FCGA++ VA++TK+AMGG+M FQDA++ RL+LM PS   VE C+ EHPP+LSPG
Sbjct:   53 QAVCFDVDSTVCTEEGIDVLAGFCGAAEAVAEMTKKAMGGNMLFQDAIRMRLELMRPSTAIVERCLREHPPQLSPG 128          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: A0A7S2V4I9_9STRA (Phosphoserine phosphatase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.380e-27
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
               AVCFDVDSTVI EEGID LA++CGA + VA+LT RAMGGSM FQDAL ARLDL+ PSK     C+E+ PP+LSPG
Sbjct:   67 EADAVCFDVDSTVIQEEGIDVLAEYCGAGEKVAELTSRAMGGSMRFQDALAARLDLIRPSKADFLNCLEKQPPKLSPG 144          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: A0A251TYV9_HELAN (Phosphoserine phosphatase n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TYV9_HELAN)

HSP 1 Score: 105 bits (262), Expect = 3.240e-26
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
            +  AVCFDVDSTV  +EGID LA+FCGA K VA+ T RAMGGS+PF++AL ARLDL  PS  TV+  +E+ PPRLSPG
Sbjct:   41 KADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLDLFKPSLSTVQDFLEKRPPRLSPG 118          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: A0A7S2D0K5_9STRA (Phosphoserine phosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0K5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.150e-25
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    7 QAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
            QAVCFDVDSTVI EEGID LA  CGA + VA+LT +AMGG+M FQDAL ARLDL+ PS   +  C+ +HPP+L+PG
Sbjct:   40 QAVCFDVDSTVITEEGIDVLAAHCGAGEAVAELTAKAMGGTMLFQDALAARLDLIRPSMNDITDCLADHPPQLTPG 115          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: A0A804NK24_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804NK24_MAIZE)

HSP 1 Score: 103 bits (256), Expect = 1.620e-25
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
               AVCFDVDSTVI +EGID LADFCGA K VA+ T +AM G++PF++AL ARL L+ PS   VE C+E+ PPR+SPG
Sbjct:   83 NADAVCFDVDSTVILDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEALAARLSLIKPSLSQVEECLEKRPPRISPG 160          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: A0A1J3EL61_NOCCA (Phosphoserine phosphatase, chloroplastic n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3EL61_NOCCA)

HSP 1 Score: 103 bits (258), Expect = 2.810e-25
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
             V+AVCFDVDSTV  +EGID LA+FCGA K VA+ T RAMGGS+PF++AL ARL L  PS   VE  +E+ PPRLSPG
Sbjct:   82 NVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSKVEEFLEKRPPRLSPG 159          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: UPI0010A41D27 (phosphoserine phosphatase, chloroplastic-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A41D27)

HSP 1 Score: 104 bits (259), Expect = 3.050e-25
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
               AVCFDVDSTV   EGID LADFCGA K VA+ T RAMGGS+PF++AL ARL L  PS   V+ C+E+ PPRLSPG
Sbjct:  107 NADAVCFDVDSTVCLGEGIDELADFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFSPSLSQVQDCLEQRPPRLSPG 184          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: D3Z4T3_MOUSE (Phosphoserine phosphatase n=4 Tax=Muroidea TaxID=337687 RepID=D3Z4T3_MOUSE)

HSP 1 Score: 98.6 bits (244), Expect = 3.520e-25
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:   10 AVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
            AVCFDVDSTVI EEGID LA FCG    V+++T+RAMGG++PF+DAL  RL L+ PS+  V+  + EHPP L+PG
Sbjct:   16 AVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTQRLALIQPSRDQVQRLLAEHPPHLTPG 90          
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Match: A0A2J6M244_LACSA (Phosphoserine phosphatase n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6M244_LACSA)

HSP 1 Score: 103 bits (257), Expect = 3.880e-25
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDALKARLDLMVPSKRTVELCVEEHPPRLSPG 234
            + +AVCFDVDSTV  +EGID LA+FCGA K VA+ T RAMGGS+PF++AL ARL L  PS  TVE  +E+ PP+LSPG
Sbjct:   81 KAEAVCFDVDSTVCMDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSTVEDFLEKRPPKLSPG 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109469.768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPS7_ECTSI2.930e-3883.33Phosphoserine phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A835ZG36_9STRA2.530e-2868.42Phosphoserine phosphatase n=1 Tax=Tribonema minus ... [more]
A0A7S2V4I9_9STRA8.380e-2767.95Phosphoserine phosphatase (Fragment) n=1 Tax=Fibro... [more]
A0A251TYV9_HELAN3.240e-2665.38Phosphoserine phosphatase n=2 Tax=Helianthus annuu... [more]
A0A7S2D0K5_9STRA1.150e-2565.79Phosphoserine phosphatase n=1 Tax=Dictyocha specul... [more]
A0A804NK24_MAIZE1.620e-2562.82Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
A0A1J3EL61_NOCCA2.810e-2565.38Phosphoserine phosphatase, chloroplastic n=3 Tax=N... [more]
UPI0010A41D273.050e-2565.38phosphoserine phosphatase, chloroplastic-like n=1 ... [more]
D3Z4T3_MOUSE3.520e-2561.33Phosphoserine phosphatase n=4 Tax=Muroidea TaxID=3... [more]
A0A2J6M244_LACSA3.880e-2564.10Phosphoserine phosphatase n=2 Tax=Lactuca TaxID=42... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109469contigH-elongata_contig109469:261..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue3.5e-30
Seed eggNOG ortholog2880.D7FPS7
Preferred namePSPH
KEGG rclassRC00006,RC00017,RC00036
KEGG koko:K00831,ko:K01079
KEGG ReactionR00582,R04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
GOsGO:0000003,GO:0000287,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004647,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007422,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008049,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016043,GO:0016053,GO:0016311,GO:0016545,GO:0016787,GO:0016788,GO:0016791,GO:0019098,GO:0019752,GO:0019953,GO:0022008,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031175,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033574,GO:0033993,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042578,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045433,GO:0045471,GO:0046394,GO:0046677,GO:0046872,GO:0046983,GO:0048065,GO:0048149,GO:0048468,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0051704,GO:0060179,GO:0061564,GO:0071704,GO:0071840,GO:0097305,GO:0097458,GO:0097485,GO:0120025,GO:0120036,GO:0120039,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901654,GO:1901700
EggNOG free text desc.phosphoserine phosphatase activity
EggNOG OGsCOG0560@1,KOG1615@2759
EC2.6.1.52,3.1.3.3
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphoserine phosphatase
Ec32 orthologEc-18_001570.1
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929622.0442963-CDS-H-elongata_contig109469:260..3811622929622.0442963-CDS-H-elongata_contig109469:260..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109469 261..381 -
1691679095.0487304-CDS-H-elongata_contig109469:260..3811691679095.0487304-CDS-H-elongata_contig109469:260..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109469 261..381 -
1622929622.056167-CDS-H-elongata_contig109469:1228..13411622929622.056167-CDS-H-elongata_contig109469:1228..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109469 1229..1341 -
1691679095.0649958-CDS-H-elongata_contig109469:1228..13411691679095.0649958-CDS-H-elongata_contig109469:1228..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109469 1229..1341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109469.768.1prot_H-elongata_contig109469.768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109469 261..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109469.768.1

>prot_H-elongata_contig109469.768.1 ID=prot_H-elongata_contig109469.768.1|Name=mRNA_H-elongata_contig109469.768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
RVQAVCFDVDSTVIAEEGIDTLADFCGASKGVADLTKRAMGGSMPFQDAL
KARLDLMVPSKRTVELCVEEHPPRLSPG
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mRNA from alignment at H-elongata_contig109469:261..1341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109469.768.1 ID=mRNA_H-elongata_contig109469.768.1|Name=mRNA_H-elongata_contig109469.768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-elongata_contig109469:261..1341- (Himanthalia elongata Himel1 dioecious)
CGCGTGCAGGCAGTCTGCTTCGACGTAGATAGCACCGTTATCGCTGAAGA GGGCATCGATACCCTCGCCGACTTCTGCGGAGCGTCAAAAGGCGTTGCGG ATCTAACCAAACGGTGACAAACCCCTTTCGAAATATTTGGATGCATCGTA CTATTGACTATTGTGTATTACTAGTAAGAGCGGTTTGGTCCTTCGATATT CAGACTTGACCCATAAAAAGCGATAGTAGGTCCTTCGTCGCGGGTGCAAT GCTGCTGGAGTTCTTTTCCTAACCATCGCGAGAACCGCCATTGCACGGAT TGACCAGGTACATCTGTCGCAGCAGGATTATTGCTGTAGAGCCCTGATCT CGTCGCATTCATGGTCTGGGGCGGAATACGCGTGTCCTACCGTATATAGT TTGTATTGTTGGGTTGTCATGATGCCGCAATGGAAAGCAACATCGAATAT TCGAGCTCGTTTGTCCCCGCCCTCGTTGACACTATAGTGTATGTGTTTTG AGTGTATCAAATCGCTCGTATCTCCGACACTAGTGTATGTATTTTTGTCG TTGCGTGTACGTGTACCGCAATATATGTTCAGTAATATGTTCAGTAATAT GTTTAGTACCGTGCGGTGACCACTTTAAGACTGACTTATAAGGGGCCCGA AGCAACCAGTACACATAAAGTCAGTCTCATTTGCGATCCGGGGCTACGCA AAGCTGTCTCAATTTGCCAGGCATATTATAGATAGGGCGACGTACTACAG GCGGCACTGTAAAGGATGTACTGCTTCTGAGGTCCCTTGGGAATAACTCC GGTCAGTTTGACGCGAAATTGTGAGGGCTCGCCTTTTAGGGGGTTGCAAC CTTGCATAGACATCATCACACTTTTAACTTGACCCTTCCTGTCCCCTACC GCCGGGGAACTATGTCGATGTACTCGTGCGGCTGATGGTGGTGATGGTGA TGGCTTGCAGAGCAATGGGGGGCTCCATGCCGTTCCAGGACGCCCTGAAA GCGAGGCTAGACCTCATGGTACCGTCGAAGAGGACGGTGGAGCTCTGTGT CGAGGAGCACCCGCCACGACTCTCACCAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig109469:261..1341-

>mRNA_H-elongata_contig109469.768.1 ID=mRNA_H-elongata_contig109469.768.1|Name=mRNA_H-elongata_contig109469.768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig109469:261..1341- (Himanthalia elongata Himel1 dioecious)
CGCGTGCAGGCAGTCTGCTTCGACGTAGATAGCACCGTTATCGCTGAAGA
GGGCATCGATACCCTCGCCGACTTCTGCGGAGCGTCAAAAGGCGTTGCGG
ATCTAACCAAACGCGCGTGCAGGCAGTCTGCTTCGACGTAGATAGCACCG
TTATCGCTGAAGAGGGCATCGATACCCTCGCCGACTTCTGCGGAGCGTCA
AAAGGCGTTGCGGATCTAACCAAACGAGCAATGGGGGGCTCCATGCCGTT
CCAGGACGCCCTGAAAGCGAGGCTAGACCTCATGGTACCGTCGAAGAGGA
CGGTGGAGCTCTGTGTCGAGGAGCACCCGCCACGACTCTCACCAGGTAGC
AATGGGGGGCTCCATGCCGTTCCAGGACGCCCTGAAAGCGAGGCTAGACC
TCATGGTACCGTCGAAGAGGACGGTGGAGCTCTGTGTCGAGGAGCACCCG
CCACGACTCTCACCAGGT
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