mRNA_H-elongata_contig109399.763.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109399.763.1
Unique NamemRNA_H-elongata_contig109399.763.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 2.020e-60
Identity = 99/109 (90.83%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            VLRACERALLWDEAVYL+KED Q+DSAVKTMI+HCVCF HELFLDCV KVRNQEVNY+AI FYLEQHPLKLVRLLTVLTPNLDHSRVVHQLR+AENLPLA+DYLKSVQK
Sbjct: 1334 VLRACERALLWDEAVYLYKEDAQYDSAVKTMIDHCVCFKHELFLDCVTKVRNQEVNYKAITFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRKAENLPLAIDYLKSVQK 1442
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.140e-51
Identity = 85/109 (77.98%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            VLRACERALLWDEAVYL+KEDGQ DSAV+ MIEHC  + H+LF++CV+KVRNQE+ YRAI FY+EQHPL LVRLL VLTP+LDH+RVVHQLR+AENLPLA +YL+SVQK
Sbjct: 1376 VLRACERALLWDEAVYLYKEDGQHDSAVRAMIEHCTAWKHDLFIECVQKVRNQEIYYRAIGFYMEQHPLDLVRLLKVLTPHLDHARVVHQLRKAENLPLATEYLQSVQK 1484
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A4D9DAY4_9STRA (Clathrin heavy chain n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAY4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 6.510e-50
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            +LRACE+ALLWDE VYL+KEDGQ D+AVKTMIEH + F HELFLDC++K RNQEV YRAIAFYLEQ P+ L RLLT+LTPNLDH+RVVHQLRRAENLPL + YLKSVQK
Sbjct: 1369 MLRACEKALLWDETVYLYKEDGQPDNAVKTMIEHPIAFYHELFLDCIQKARNQEVYYRAIAFYLEQQPMLLERLLTLLTPNLDHARVVHQLRRAENLPLVLPYLKSVQK 1477
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A024U3J7_9STRA (Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024U3J7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.650e-49
Identity = 80/109 (73.39%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL VDYLK VQK
Sbjct: 1360 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSDNLPLVVDYLKDVQK 1468
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A225V906_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V906_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.030e-49
Identity = 79/109 (72.48%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F+H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL V+YLK VQK
Sbjct:  956 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFSHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSKNLPLVVEYLKDVQK 1064
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A2P4XMC0_9STRA (Clathrin heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMC0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.700e-49
Identity = 78/109 (71.56%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H + F+H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL V+YLK VQK
Sbjct:  620 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPIAFSHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSKNLPLVVEYLKDVQK 728
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A5D6XWJ0_9STRA (Clathrin-link domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWJ0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.240e-49
Identity = 80/109 (73.39%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            VLRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F+H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+  NLPL V+YLK VQK
Sbjct: 1363 VLRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFSHDLFLDCIQKVRNQEIHYKAIHFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKTSNLPLVVEYLKDVQK 1471
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: K3WLC2_GLOUD (Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 RepID=K3WLC2_GLOUD)

HSP 1 Score: 175 bits (444), Expect = 1.060e-48
Identity = 80/109 (73.39%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            VLRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+  NLPL V+YLK VQK
Sbjct: 1363 VLRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKTHNLPLVVEYLKDVQK 1471
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 175 bits (443), Expect = 1.460e-48
Identity = 80/109 (73.39%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            VLRACE+ L WD AVY +KEDGQFD+AV+TM++H V F H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+A NLPL V+YLK VQK
Sbjct: 1766 VLRACEKGLHWDHAVYXYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKANNLPLVVEYLKDVQK 1874
[Close]
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A3R6ZXA9_9STRA (Clathrin-link domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZXA9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.460e-48
Identity = 78/109 (71.56%), Postives = 98/109 (89.91%), Query Frame = 1 
Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 327
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F H+LFLDC+++VRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL V+YLK VQK
Sbjct: 1896 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQRVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSDNLPLVVEYLKDVQK 2004
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI2.020e-6090.83Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZH1_9STRA2.140e-5177.98Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A4D9DAY4_9STRA6.510e-5078.90Clathrin heavy chain n=2 Tax=Monodopsidaceae TaxID... [more]
A0A024U3J7_9STRA1.650e-4973.39Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxI... [more]
A0A225V906_9STRA3.030e-4972.48Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho... [more]
A0A2P4XMC0_9STRA3.700e-4971.56Clathrin heavy chain n=1 Tax=Phytophthora palmivor... [more]
A0A5D6XWJ0_9STRA4.240e-4973.39Clathrin-link domain-containing protein n=1 Tax=Py... [more]
K3WLC2_GLOUD1.060e-4873.39Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 ... [more]
A0A2D4BEN2_PYTIN1.460e-4873.39Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re... [more]
A0A3R6ZXA9_9STRA1.460e-4871.56Clathrin-link domain-containing protein n=8 Tax=Ap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109399contigH-elongata_contig109399:445..1372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.3e-51
Seed eggNOG ortholog2880.D7FWD1
Preferred nameCLTC
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.6206367-CDS-H-elongata_contig109399:444..5911622929621.6206367-CDS-H-elongata_contig109399:444..591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109399 445..591 +
1691679094.774837-CDS-H-elongata_contig109399:444..5911691679094.774837-CDS-H-elongata_contig109399:444..591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109399 445..591 +
1622929621.63606-CDS-H-elongata_contig109399:1192..13721622929621.63606-CDS-H-elongata_contig109399:1192..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109399 1193..1372 +
1691679094.7970564-CDS-H-elongata_contig109399:1192..13721691679094.7970564-CDS-H-elongata_contig109399:1192..1372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109399 1193..1372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109399.763.1prot_H-elongata_contig109399.763.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109399 445..1372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109399.763.1

>prot_H-elongata_contig109399.763.1 ID=prot_H-elongata_contig109399.763.1|Name=mRNA_H-elongata_contig109399.763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKV
RNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLA
VDYLKSVQK
back to top

mRNA from alignment at H-elongata_contig109399:445..1372+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109399.763.1 ID=mRNA_H-elongata_contig109399.763.1|Name=mRNA_H-elongata_contig109399.763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig109399:445..1372+ (Himanthalia elongata Himel1 dioecious)
GTCCTTCGTGCCTGCGAGCGCGCTCTGCTGTGGGACGAGGCGGTGTACCT
TTTCAAGGAGGACGGTCAATTCGACAGTGCCGTGAAGACGATGATCGAGC
ATTGCGTGTGCTTCAACCATGAGTTGTTCCTTGACTGCGTGAAGAAGGTA
ATCCATATTAAAATAGAAGGAAATGTGAACATTAAGCTAGACATGTCATC
ATCGGTATTGTACATCGACTGCGTCCAAAAGGTACCCTATTTTAAAATTT
CGATACTGTACCTTGATTGCGTCATTAAGGTACCCCTATTTTAGACCTTT
TATCTATATTAAAATATTAGGTAATGTTAACATGATGCTATAATAGGCAC
ATATTGTATATAAATAAAATATATAAAAGCCCAGGTAACATTGTTCCCCG
CAAGCAACATCCGAGAGGTAATGCGTGTTTGCGCTCCCACTAAAGTGGTT
TGTACCGCCTCGCTCTGAAAAGAGGGGTTTGGTAGGCAGCCGTACGTTTC
AAGCCGTTAAAGCCCTTAATTATTAAAATATCTCTTCTCTCGTTGTTGGT
CGCTTTTGCAGTCTCCCCAGTTGGCGCTGGCAGCGGTAGCTATTAATAGT
ATATCACACCCTTTCACGAGGTATTCGAAGGCGTTTTAGTTTCAGTAATT
AATTCGACCGTTTCGCCCAAATAGCGCCTCTCCCTACGAAATCCCTTCTT
TCTTGTTTTGTCATCTGTGTTTTCTTCTTGTCTCTCTTGTCTCGACAGGT
TCGAAACCAGGAGGTTAACTACAGGGCGATCGCCTTCTACCTGGAGCAGC
ATCCTCTCAAGCTTGTGCGGCTGCTGACGGTGCTGACCCCTAATCTGGAC
CACAGCCGTGTCGTCCACCAGCTTAGGAGGGCGGAGAACCTGCCCCTTGC
GGTGGACTACCTTAAGTCTGTCCAGAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109399:445..1372+

>mRNA_H-elongata_contig109399.763.1 ID=mRNA_H-elongata_contig109399.763.1|Name=mRNA_H-elongata_contig109399.763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig109399:445..1372+ (Himanthalia elongata Himel1 dioecious)
GTCCTTCGTGCCTGCGAGCGCGCTCTGCTGTGGGACGAGGCGGTGTACCT
TTTCAAGGAGGACGGTCAATTCGACAGTGCCGTGAAGACGATGATCGAGC
ATTGCGTGTGCTTCAACCATGAGTTGTTCCTTGACTGCGTGAAGAAGGTC
CTTCGTGCCTGCGAGCGCGCTCTGCTGTGGGACGAGGCGGTGTACCTTTT
CAAGGAGGACGGTCAATTCGACAGTGCCGTGAAGACGATGATCGAGCATT
GCGTGTGCTTCAACCATGAGTTGTTCCTTGACTGCGTGAAGAAGGTTCGA
AACCAGGAGGTTAACTACAGGGCGATCGCCTTCTACCTGGAGCAGCATCC
TCTCAAGCTTGTGCGGCTGCTGACGGTGCTGACCCCTAATCTGGACCACA
GCCGTGTCGTCCACCAGCTTAGGAGGGCGGAGAACCTGCCCCTTGCGGTG
GACTACCTTAAGTCTGTCCAGAAGGTTCGAAACCAGGAGGTTAACTACAG
GGCGATCGCCTTCTACCTGGAGCAGCATCCTCTCAAGCTTGTGCGGCTGC
TGACGGTGCTGACCCCTAATCTGGACCACAGCCGTGTCGTCCACCAGCTT
AGGAGGGCGGAGAACCTGCCCCTTGCGGTGGACTACCTTAAGTCTGTCCA
GAAG
back to top