mRNA_H-elongata_contig109385.762.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109385.762.1
Unique NamemRNA_H-elongata_contig109385.762.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.190e-40
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV 255
            LLINGATGIAVGMATNIPPHNLGEVV+ATIALIR P + DDQ+FR+LPAPDFPTGG IMGL+GARKLY+TSNGGVT+RATTH EV
Sbjct:  324 LLINGATGIAVGMATNIPPHNLGEVVAATIALIRNPELPDDQLFRLLPAPDFPTGGRIMGLAGARKLYTTSNGGVTLRATTHIEV 408          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.430e-33
Identity = 59/84 (70.24%), Postives = 74/84 (88.10%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 252
            LL+NGATGIAVGMATNIPPHNLGE+  A +ALI++P + +  +F+I+PAPDFP+GG IMGL+GARK+Y+TSNG VT+RATTH E
Sbjct:  146 LLLNGATGIAVGMATNIPPHNLGELTDACVALIKDPELPEADLFKIVPAPDFPSGGTIMGLAGARKMYTTSNGSVTLRATTHIE 229          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: W7TLA9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLA9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.370e-31
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 252
            LL+NGATGIAVGMATN+PPHNLGEV+  T+ALI +P +SDD++ R++PAPDFPTGG IMGL G RKLY+  +G + +RA TH E
Sbjct:  291 LLLNGATGIAVGMATNVPPHNLGEVLDGTLALIEDPSLSDDKLLRLIPAPDFPTGGDIMGLEGPRKLYTNGSGSIVMRAKTHME 374          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A0G4GL74_9ALVE (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GL74_9ALVE)

HSP 1 Score: 124 bits (311), Expect = 3.490e-31
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 252
            LL+NGATGIAVGMATNIPPHNLGE+VSA IALI E  + DD +F+++P PDFPTGG I+G  GARKLY+TS GGV +RA  H E
Sbjct:  228 LLLNGATGIAVGMATNIPPHNLGELVSACIALIDERELPDDDLFQLVPGPDFPTGGIILGTQGARKLYTTSGGGVRVRARVHVE 311          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A0G4ESH9_VITBC (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESH9_VITBC)

HSP 1 Score: 123 bits (309), Expect = 6.490e-31
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 252
            LL+NGATGIAVGMATNIPPH LGE+V A IALI+ P +SD+++F ++PAPDFPTG  I+GL G RKLY T NG V +RA TH E
Sbjct:  184 LLLNGATGIAVGMATNIPPHQLGELVDACIALIKNPSLSDERLFSLIPAPDFPTGALIVGLEGVRKLYKTGNGAVVMRARTHVE 267          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A7S4F4W1_CHRCT (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F4W1_CHRCT)

HSP 1 Score: 122 bits (307), Expect = 1.210e-30
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV 255
            LL+NGATGIAVGMATN PPHNLGE+V A   ++++P +SD+++F I+PAPDFP+GG IMGLSGAR++YST  G V +RA  HTE+
Sbjct:  262 LLLNGATGIAVGMATNCPPHNLGELVDALQVILKDPEVSDEKLFSIIPAPDFPSGGTIMGLSGARQMYSTGRGSVVVRAKAHTEM 346          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A2V3IEH5_9FLOR (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEH5_9FLOR)

HSP 1 Score: 119 bits (299), Expect = 1.450e-29
Identity = 53/84 (63.10%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 252
            LL+NG +GIAVGMATNIPPHNLGE+VSA  ALI +P +SD+++F  +PAPDFPTGG I+G  GA+++Y T  G +T+RA  HTE
Sbjct:  224 LLVNGGSGIAVGMATNIPPHNLGELVSALTALIEDPDVSDERLFEFVPAPDFPTGGLILGTDGAKEMYRTGRGRITVRALAHTE 307          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: UPI001D035179 (DNA gyrase subunit A n=1 Tax=Pseudogemmobacter sp. CC-YST710 TaxID=2755041 RepID=UPI001D035179)

HSP 1 Score: 119 bits (298), Expect = 1.980e-29
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 252
            +L+NGA GIAVGMATNIPPHNLGEVV AT+A+I  P IS +Q+  I+PAPDFPTGG I+G SGARK Y    G V IRA THTE
Sbjct:  180 MLVNGAGGIAVGMATNIPPHNLGEVVDATLAMIGNPDISTEQLMEIIPAPDFPTGGQILGRSGARKAYLEGRGSVIIRAKTHTE 263          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A257ZSW4_9RHOB (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Rhodobacterales bacterium 12-65-15 TaxID=1970555 RepID=A0A257ZSW4_9RHOB)

HSP 1 Score: 113 bits (283), Expect = 6.260e-29
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTE 252
            +L+NGA GIAVGMATNIPPHNLGEV+  T+ALI  P IS + +  I+PAPDFPTGG I+G SGARK Y    G V IRA TH E
Sbjct:  180 MLVNGAGGIAVGMATNIPPHNLGEVIDGTLALIDNPDISMEALMEIIPAPDFPTGGLILGRSGARKAYLEGRGSVIIRAKTHIE 263          
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Match: A0A7S0JD38_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JD38_9EUKA)

HSP 1 Score: 112 bits (280), Expect = 1.310e-28
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAPDFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV 255
            LL+NGA GIAVGMATN PPHNLGE+V A  AL+R+  ++D+ +F ++ APDFP+GG IMG SGAR++Y+T  G + IRAT HTE+
Sbjct:  179 LLLNGAAGIAVGMATNCPPHNLGELVDALQALLRDRTVADEVLFSLVRAPDFPSGGTIMGSSGARQMYATGRGSILIRATAHTEL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109385.762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKP9_9PHAE3.190e-4085.88DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectoca... [more]
A0A836CKD9_9STRA4.430e-3370.24DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribon... [more]
W7TLA9_9STRA1.370e-3166.67DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Monodo... [more]
A0A0G4GL74_9ALVE3.490e-3170.24DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chrome... [more]
A0A0G4ESH9_VITBC6.490e-3167.86DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrel... [more]
A0A7S4F4W1_CHRCT1.210e-3064.71DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chryso... [more]
A0A2V3IEH5_9FLOR1.450e-2963.10DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Gracil... [more]
UPI001D0351791.980e-2969.05DNA gyrase subunit A n=1 Tax=Pseudogemmobacter sp.... [more]
A0A257ZSW4_9RHOB6.260e-2965.48DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
A0A7S0JD38_9EUKA1.310e-2861.18Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109385contigH-elongata_contig109385:527..1790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue1.8e-35
Seed eggNOG ortholog2880.D8LPZ0
Preferred nameGYRA
KEGG koko:K02469,ko:K03164
KEGG Pathwayko01524,map01524
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0009295,GO:0009507,GO:0009536,GO:0016592,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0070013
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
Ec32 ortholog descriptionDNA gyrase subunit A
Ec32 orthologEc-15_001600.1
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.5589855-CDS-H-elongata_contig109385:526..6181622929621.5589855-CDS-H-elongata_contig109385:526..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109385 527..618 -
1691679094.740364-CDS-H-elongata_contig109385:526..6181691679094.740364-CDS-H-elongata_contig109385:526..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109385 527..618 -
1622929621.5791585-CDS-H-elongata_contig109385:1624..17901622929621.5791585-CDS-H-elongata_contig109385:1624..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109385 1625..1790 -
1691679094.7557135-CDS-H-elongata_contig109385:1624..17901691679094.7557135-CDS-H-elongata_contig109385:1624..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109385 1625..1790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109385.762.1prot_H-elongata_contig109385.762.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109385 527..1790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109385.762.1

>prot_H-elongata_contig109385.762.1 ID=prot_H-elongata_contig109385.762.1|Name=mRNA_H-elongata_contig109385.762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LLINGATGIAVGMATNIPPHNLGEVVSATIALIREPGISDDQIFRILPAP
DFPTGGCIMGLSGARKLYSTSNGGVTIRATTHTEV*
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mRNA from alignment at H-elongata_contig109385:527..1790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109385.762.1 ID=mRNA_H-elongata_contig109385.762.1|Name=mRNA_H-elongata_contig109385.762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1264bp|location=Sequence derived from alignment at H-elongata_contig109385:527..1790- (Himanthalia elongata Himel1 dioecious)
CTGCTGATCAACGGCGCCACCGGAATTGCCGTCGGCATGGCCACGAACAT CCCCCCGCACAACCTGGGAGAGGTGGTCTCCGCCACAATCGCCTTGATCC GCGAGCCCGGGATATCGGACGACCAGATTTTCCGCATTCTTCCTGCTCCT GACTTCCCCACGGGAGGTGTAGTAGTCTGCGACCACCGGAATGCAGGGGG GGTATTCGATTCGGAGGGGCACGAGGGTAATGCCGTCGGGGTCGTTATGA ACACCTGTTCGTCAGCTTCGCCCGTCATAGTTTTTCTCCTTTGAGAGTTC GTGCTGTGTTAACAGACTTGGGCGTGTTGCGCTCGTGCCTCAGGTGGCAC ATATGCATGGAATCACACCCCGGGGATATGAGTTTAGCACTCCCTCTCAA TGCCACAGGCCACACACATTCAGAAACCCACACCCCTGGGATAAAATATT AAAGCCCCGTCTCAATGCCGCAGGCCACATACATTCATGGAATTACATCC CGGGGATAAAAGATGAAAATCCCCTCTCTATCGTTTTCTCGTGAACGACG GAACAGGCCGCTTCGGCGTCGCGAGCCGTCTATATACGGGGAAGATCTCA CCAATGTCCCAAATATCGTTTTCGTTCACGGGCCGTATGGAATAACTGCT ACTCATAGTTGCTGAGACAATTGAAAGGGGACGCCCGTAAGCCATCCTCC ATCCCCCAGGGGGGTGCTTCCACCATTTGTCACCCTCCGGGGTGTTTGAC AGACTTAAGTCTTTGGTTCGGCCTTAAAATCTGAAGCGGGGGGGGGGGTA CTTTGGTTTTACGGATGTCGTATCGTAACGGATATAGGCCCCGCATCATT ATCCCAGTAATGCCGGTACGAAGCGGTATTCCGTGATTCCGTGGCTTGCG CTTCGTGAGGATAGCACCAAAGCTTTTAGCCATTATCCTTGTGACCACGG GCTGGATTTTGACATCAGCTTATGTGAGAATTCAATTCAATTCAATTCAA TTACCCCCCCATGCCTTAATGTTCCGTGCCATAAGAGCTAACCCGGAAAA GGGAGGGTGTTTGTGTGTGTGTGTGTCGAAGAGGACGGGTGTCCGCGTAT CGTGGTCACTCGAGCGGACCTTGACTCTCCGACCTCCTGCTCTGCCTCTC TCTCCTTGTCGTTCGAACCCAGGGTGCATCATGGGGCTGAGCGGAGCGCG CAAGCTGTACTCGACGTCGAACGGAGGAGTCACCATCCGTGCCACCACGC ACACGGAGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig109385:527..1790-

>mRNA_H-elongata_contig109385.762.1 ID=mRNA_H-elongata_contig109385.762.1|Name=mRNA_H-elongata_contig109385.762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig109385:527..1790- (Himanthalia elongata Himel1 dioecious)
CTGCTGATCAACGGCGCCACCGGAATTGCCGTCGGCATGGCCACGAACAT
CCCCCCGCACAACCTGGGAGAGGTGGTCTCCGCCACAATCGCCTTGATCC
GCGAGCCCGGGATATCGGACGACCAGATTTTCCGCATTCTTCCTGCTCCT
GACTTCCCCACGGGAGCTGCTGATCAACGGCGCCACCGGAATTGCCGTCG
GCATGGCCACGAACATCCCCCCGCACAACCTGGGAGAGGTGGTCTCCGCC
ACAATCGCCTTGATCCGCGAGCCCGGGATATCGGACGACCAGATTTTCCG
CATTCTTCCTGCTCCTGACTTCCCCACGGGAGGGTGCATCATGGGGCTGA
GCGGAGCGCGCAAGCTGTACTCGACGTCGAACGGAGGAGTCACCATCCGT
GCCACCACGCACACGGAGGTGTGAGGTGCATCATGGGGCTGAGCGGAGCG
CGCAAGCTGTACTCGACGTCGAACGGAGGAGTCACCATCCGTGCCACCAC
GCACACGGAGGTGTGA
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