mRNA_H-elongata_contig109355.760.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109355.760.1
Unique NamemRNA_H-elongata_contig109355.760.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: D7G4M7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.320e-15
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 SVSPVMFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR 156
            SVSPV FST ADG +++GLS VPD D    RPI+FVGNHQL+ LDLGVI++R
Sbjct:  473 SVSPVFFSTGADGVTVSGLSKVPDGDKSTSRPIIFVGNHQLLALDLGVIVER 524
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A835Z8H3_9STRA (Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.490e-9
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 VSPVMFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR 156
            VSPV FST ADG  + GL  +PD DP+R  PILFV NHQ + +DL +I D+
Sbjct:  376 VSPVFFSTRADGTIVEGLGALPDVDPNR--PILFVANHQYLAMDLSLIYDQ 424
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: F0YDT5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDT5_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.490e-9
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 VSPVMFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR 156
            VSPV FST  DG  + GL GV  P P  KRP+L VGNHQL G+DL V++D 
Sbjct:  390 VSPVFFSTV-DGVPVRGLKGV--PSPGEKRPVLLVGNHQLFGIDLSVLVDE 437
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A6A5P4K6_LUPAL (Acyltransferase (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5P4K6_LUPAL)

HSP 1 Score: 57.0 bits (136), Expect = 3.930e-8
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   16 MFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR 156
            MFST  DGK + GLSGVPD     K P+LFVG H LMGLDL  ++DR
Sbjct:   39 MFSTLEDGKIVEGLSGVPD-----KGPVLFVGYHMLMGLDLIPLVDR 80
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A6A4NND5_LUPAL (Acyltransferase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NND5_LUPAL)

HSP 1 Score: 57.0 bits (136), Expect = 4.140e-8
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   16 MFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR 156
            MFST  DGK + GLSGVPD     K P+LFVG H LMGLDL  ++DR
Sbjct:  196 MFSTLEDGKIVEGLSGVPD-----KGPVLFVGYHMLMGLDLIPLVDR 237
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A7S0SGW0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGW0_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 4.160e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 VSPVMFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR 156
            VSPV FST ADG+ + GL  VP  + DR  P++FVGNHQ + +DLG +I  
Sbjct:  515 VSPVFFSTRADGRIIPGLDAVPLGEGDR--PVIFVGNHQTLAVDLGFLIQE 563
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A4P1QUP9_LUPAN (Hydrolase_4 domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1QUP9_LUPAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.990e-7
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   16 MFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR 156
            MFST  DGK + GLSGVPD     K P+LFVG H L+G+DL  ++DR
Sbjct:  446 MFSTLEDGKIVEGLSGVPD-----KGPVLFVGYHMLLGIDLIPLVDR 487
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A8K0IRI6_COCNU (Uncharacterized protein n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0IRI6_COCNU)

HSP 1 Score: 54.3 bits (129), Expect = 3.490e-7
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 VSPVMFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDL 138
            +SPVMFST  DGK + GLSGVP+  P     +L VGNH LMGL+L
Sbjct:  188 ISPVMFSTMQDGKIVRGLSGVPNDGP-----VLLVGNHMLMGLEL 227
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A7H4LNL5_WHEAT (Acyltransferase n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LNL5_WHEAT)

HSP 1 Score: 54.3 bits (129), Expect = 3.700e-7
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 VSPVMFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIID 153
            +SPVM ST   GK + GL+G+PD     K PILFVGNHQL+G+++  + D
Sbjct:  196 LSPVMLSTLETGKIVRGLTGIPD-----KGPILFVGNHQLLGIEVPSLFD 240
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BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Match: A0A7S3ZGH9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZGH9_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 4.860e-7
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    7 SPVMFSTAADGKSLAGLSGVPDPDPDRKRP----ILFVGNHQLMGLDLGVIIDR 156
            SPV +ST ADG+ + GL  VP PD     P     L VGNHQL GLDLG+II+ 
Sbjct:  158 SPVFYSTNADGEVIPGLGHVPWPDNAEGSPDAPATLLVGNHQLYGLDLGMIINE 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109355.760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M7_ECTSI9.320e-1567.31AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A835Z8H3_9STRA2.490e-956.86Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID... [more]
F0YDT5_AURAN2.490e-958.82Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6A5P4K6_LUPAL3.930e-861.70Acyltransferase (Fragment) n=1 Tax=Lupinus albus T... [more]
A0A6A4NND5_LUPAL4.140e-861.70Acyltransferase n=1 Tax=Lupinus albus TaxID=3870 R... [more]
A0A7S0SGW0_9CHLO4.160e-852.94Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A4P1QUP9_LUPAN1.990e-757.45Hydrolase_4 domain-containing protein n=1 Tax=Lupi... [more]
A0A8K0IRI6_COCNU3.490e-760.00Uncharacterized protein n=1 Tax=Cocos nucifera Tax... [more]
A0A7H4LNL5_WHEAT3.700e-752.00Acyltransferase n=1 Tax=Triticum aestivum TaxID=45... [more]
A0A7S3ZGH9_9EUKA4.860e-753.70Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109355contigH-elongata_contig109355:284..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog2880.D7G4M7
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
EggNOG free text desc.fatty alcohol metabolic process
EggNOG OGs2QQUD@2759,COG0204@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.460255-UTR-H-elongata_contig109355:283..2981622929621.460255-UTR-H-elongata_contig109355:283..298Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109355 284..298 +
1691679094.70275-UTR-H-elongata_contig109355:283..2981691679094.70275-UTR-H-elongata_contig109355:283..298Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109355 284..298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.4758134-CDS-H-elongata_contig109355:298..4421622929621.4758134-CDS-H-elongata_contig109355:298..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109355 299..442 +
1691679094.7179127-CDS-H-elongata_contig109355:298..4421691679094.7179127-CDS-H-elongata_contig109355:298..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109355 299..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109355.760.1prot_H-elongata_contig109355.760.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109355 299..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109355.760.1

>prot_H-elongata_contig109355.760.1 ID=prot_H-elongata_contig109355.760.1|Name=mRNA_H-elongata_contig109355.760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MFSTAADGKSLAGLSGVPDPDPDRKRPILFVGNHQLMGLDLGVIIDR*
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mRNA from alignment at H-elongata_contig109355:284..442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109355.760.1 ID=mRNA_H-elongata_contig109355.760.1|Name=mRNA_H-elongata_contig109355.760.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig109355:284..442+ (Himanthalia elongata Himel1 dioecious)
AGCGTGAGCCCGGTGATGTTCTCAACCGCAGCCGATGGCAAGAGCCTGGC
GGGACTTTCTGGGGTACCTGATCCTGATCCTGACCGAAAAAGGCCCATCC
TTTTCGTGGGCAACCATCAGCTGATGGGGCTCGACCTCGGCGTGATTATC
GATAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig109355:284..442+

>mRNA_H-elongata_contig109355.760.1 ID=mRNA_H-elongata_contig109355.760.1|Name=mRNA_H-elongata_contig109355.760.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig109355:284..442+ (Himanthalia elongata Himel1 dioecious)
ATGTTCTCAACCGCAGCCGATGGCAAGAGCCTGGCGGGACTTTCTGGGGT
ACCTGATCCTGATCCTGACCGAAAAAGGCCCATCCTTTTCGTGGGCAACC
ATCAGCTGATGGGGCTCGACCTCGGCGTGATTATCGATAGGTGAATGTTC
TCAACCGCAGCCGATGGCAAGAGCCTGGCGGGACTTTCTGGGGTACCTGA
TCCTGATCCTGACCGAAAAAGGCCCATCCTTTTCGTGGGCAACCATCAGC
TGATGGGGCTCGACCTCGGCGTGATTATCGATAGGTGA
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