mRNA_H-elongata_contig10928.752.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10928.752.1
Unique NamemRNA_H-elongata_contig10928.752.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10928.752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10928contigH-elongata_contig10928:5171..5588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative; AAA family ATP ase
Ec32 orthologEc-24_004440.1
Exons1
Model size419
Cds size288
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.2196124-UTR-H-elongata_contig10928:5170..53001622929620.2196124-UTR-H-elongata_contig10928:5170..5300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10928 5171..5300 +
1691679094.0582323-UTR-H-elongata_contig10928:5170..53001691679094.0582323-UTR-H-elongata_contig10928:5170..5300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10928 5171..5300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.2344537-CDS-H-elongata_contig10928:5300..55881622929620.2344537-CDS-H-elongata_contig10928:5300..5588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10928 5301..5588 +
1691679094.070717-CDS-H-elongata_contig10928:5300..55881691679094.070717-CDS-H-elongata_contig10928:5300..5588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10928 5301..5588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10928.752.1prot_H-elongata_contig10928.752.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10928 5301..5588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10928.752.1

>prot_H-elongata_contig10928.752.1 ID=prot_H-elongata_contig10928.752.1|Name=mRNA_H-elongata_contig10928.752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MDPSPSLDDICRARYDLLLFAAERCQEDAPGVARDSGESKHRRKMLELGA
MGVLEAELETLSVEASVTQGRSISGRELENLKSSLLSLLDRHYNNL
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mRNA from alignment at H-elongata_contig10928:5171..5588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10928.752.1 ID=mRNA_H-elongata_contig10928.752.1|Name=mRNA_H-elongata_contig10928.752.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=418bp|location=Sequence derived from alignment at H-elongata_contig10928:5171..5588+ (Himanthalia elongata Himel1 dioecious)
GGAACAACCGGGTTTGGTTGCCTTCTGCTCGTGGTCAGCTGAACAGGGAA
AATAATTTCCCTGTCCCCGTTCGCGCCTGAGAATACAGTACTTCCAAGGT
AGGGTCGCTTGGGTAGTGCTACTTCCTCTCATGGATCCATCTCCGAGTCT
AGACGATATTTGCCGAGCGAGATATGACCTCCTTCTCTTCGCGGCAGAGC
GCTGCCAGGAAGATGCTCCTGGTGTCGCGCGTGATTCTGGAGAGTCGAAG
CATCGGCGGAAGATGTTGGAGCTTGGGGCCATGGGCGTTCTAGAGGCAGA
ACTGGAGACCCTTTCAGTGGAGGCAAGCGTCACGCAGGGGCGTTCAATCT
CTGGGCGAGAACTTGAAAACTTGAAATCTTCTCTTTTATCCCTGCTGGAT
CGACACTACAACAATCTC
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Coding sequence (CDS) from alignment at H-elongata_contig10928:5171..5588+

>mRNA_H-elongata_contig10928.752.1 ID=mRNA_H-elongata_contig10928.752.1|Name=mRNA_H-elongata_contig10928.752.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig10928:5171..5588+ (Himanthalia elongata Himel1 dioecious)
ATGGATCCATCTCCGAGTCTAGACGATATTTGCCGAGCGAGATATGACCT
CCTTCTCTTCGCGGCAGAGCGCTGCCAGGAAGATGCTCCTGGTGTCGCGC
GTGATTCTGGAGAGTCGAAGCATCGGCGGAAGATGTTGGAGCTTGGGGCC
ATGGGCGTTCTAGAGGCAGAACTGGAGACCCTTTCAGTGGAGGCAAGCGT
CACGCAGGGGCGTTCAATCTCTGGGCGAGAACTTGAAAACTTGAAATCTT
CTCTTTTATCCCTGCTGGATCGACACTACAACAATCTCATGGATCCATCT
CCGAGTCTAGACGATATTTGCCGAGCGAGATATGACCTCCTTCTCTTCGC
GGCAGAGCGCTGCCAGGAAGATGCTCCTGGTGTCGCGCGTGATTCTGGAG
AGTCGAAGCATCGGCGGAAGATGTTGGAGCTTGGGGCCATGGGCGTTCTA
GAGGCAGAACTGGAGACCCTTTCAGTGGAGGCAAGCGTCACGCAGGGGCG
TTCAATCTCTGGGCGAGAACTTGAAAACTTGAAATCTTCTCTTTTATCCC
TGCTGGATCGACACTACAACAATCTC
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