mRNA_H-elongata_contig109155.743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109155.743.1
Unique NamemRNA_H-elongata_contig109155.743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109155.743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109155contigH-elongata_contig109155:856..1508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size653
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109155.743.1prot_H-elongata_contig109155.743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109155 891..1415 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.5384622-UTR-H-elongata_contig109155:855..8901622929619.5384622-UTR-H-elongata_contig109155:855..890Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109155 856..890 +
1691679093.7981462-UTR-H-elongata_contig109155:855..8901691679093.7981462-UTR-H-elongata_contig109155:855..890Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109155 856..890 +
1622929619.5652773-UTR-H-elongata_contig109155:1415..15081622929619.5652773-UTR-H-elongata_contig109155:1415..1508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109155 1416..1508 +
1691679093.814443-UTR-H-elongata_contig109155:1415..15081691679093.814443-UTR-H-elongata_contig109155:1415..1508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109155 1416..1508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.550113-CDS-H-elongata_contig109155:890..14151622929619.550113-CDS-H-elongata_contig109155:890..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109155 891..1415 +
1691679093.8051345-CDS-H-elongata_contig109155:890..14151691679093.8051345-CDS-H-elongata_contig109155:890..1415Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109155 891..1415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109155.743.1

>prot_H-elongata_contig109155.743.1 ID=prot_H-elongata_contig109155.743.1|Name=mRNA_H-elongata_contig109155.743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MFPSRHESSREVILTRVRHISRYDYSRSICCGGGRYIFRSSTDLLYIPCL
VFLLLHLHILGGSACGLGLTPHGATAVRQSPQHDSPQLSKENIRPDRVNW
TWTTSNRRFMGGSLAASTLPGRTHKRSRSRTSQTGAPILVRKYHRGVCTS
VVFSRVGINATSVPCRFQPMVYYC*
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mRNA from alignment at H-elongata_contig109155:856..1508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109155.743.1 ID=mRNA_H-elongata_contig109155.743.1|Name=mRNA_H-elongata_contig109155.743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=653bp|location=Sequence derived from alignment at H-elongata_contig109155:856..1508+ (Himanthalia elongata Himel1 dioecious)
TTTCCGCCTCTTTAGTCAAGCCCTCGCCGAAAGTCATGTTCCCTTCTCGG
CATGAGTCAAGCCGAGAGGTTATATTAACTCGAGTAAGACACATTAGTCG
CTACGACTACAGCAGAAGTATTTGCTGTGGCGGCGGTAGATATATATTCA
GGTCGTCAACCGATTTGCTCTACATCCCCTGTCTAGTTTTCCTGTTGTTG
CACTTGCATATTCTCGGTGGATCGGCGTGCGGGCTTGGCTTGACGCCTCA
TGGCGCAACAGCGGTACGCCAATCACCTCAGCATGATAGCCCACAGTTAT
CGAAAGAAAATATTCGTCCTGATCGCGTCAACTGGACCTGGACGACTAGC
AATCGACGTTTTATGGGTGGGTCTCTTGCCGCGTCGACTCTACCGGGCAG
AACTCATAAACGGTCACGGTCACGAACTTCTCAGACAGGAGCACCAATCT
TGGTGAGAAAATATCACAGAGGCGTGTGCACATCGGTCGTATTCAGCAGG
GTGGGTATAAACGCAACTAGCGTGCCGTGTCGTTTTCAGCCCATGGTATA
TTACTGCTAGCCATAACCTAACTGCCTTTCTTTATGGATTTGTCGGCCTT
GGCAGACACCGGTTTCGTATCAAGAGCACTATTTAATTAACCCTTTAGAA
CCT
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Coding sequence (CDS) from alignment at H-elongata_contig109155:856..1508+

>mRNA_H-elongata_contig109155.743.1 ID=mRNA_H-elongata_contig109155.743.1|Name=mRNA_H-elongata_contig109155.743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig109155:856..1508+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCCTTCTCGGCATGAGTCAAGCCGAGAGGTTATATTAACTCGAGT
AAGACACATTAGTCGCTACGACTACAGCAGAAGTATTTGCTGTGGCGGCG
GTAGATATATATTCAGGTCGTCAACCGATTTGCTCTACATCCCCTGTCTA
GTTTTCCTGTTGTTGCACTTGCATATTCTCGGTGGATCGGCGTGCGGGCT
TGGCTTGACGCCTCATGGCGCAACAGCGGTACGCCAATCACCTCAGCATG
ATAGCCCACAGTTATCGAAAGAAAATATTCGTCCTGATCGCGTCAACTGG
ACCTGGACGACTAGCAATCGACGTTTTATGGGTGGGTCTCTTGCCGCGTC
GACTCTACCGGGCAGAACTCATAAACGGTCACGGTCACGAACTTCTCAGA
CAGGAGCACCAATCTTGGTGAGAAAATATCACAGAGGCGTGTGCACATCG
GTCGTATTCAGCAGGGTGGGTATAAACGCAACTAGCGTGCCGTGTCGTTT
TCAGCCCATGGTATATTACTGCTAGATGTTCCCTTCTCGGCATGAGTCAA
GCCGAGAGGTTATATTAACTCGAGTAAGACACATTAGTCGCTACGACTAC
AGCAGAAGTATTTGCTGTGGCGGCGGTAGATATATATTCAGGTCGTCAAC
CGATTTGCTCTACATCCCCTGTCTAGTTTTCCTGTTGTTGCACTTGCATA
TTCTCGGTGGATCGGCGTGCGGGCTTGGCTTGACGCCTCATGGCGCAACA
GCGGTACGCCAATCACCTCAGCATGATAGCCCACAGTTATCGAAAGAAAA
TATTCGTCCTGATCGCGTCAACTGGACCTGGACGACTAGCAATCGACGTT
TTATGGGTGGGTCTCTTGCCGCGTCGACTCTACCGGGCAGAACTCATAAA
CGGTCACGGTCACGAACTTCTCAGACAGGAGCACCAATCTTGGTGAGAAA
ATATCACAGAGGCGTGTGCACATCGGTCGTATTCAGCAGGGTGGGTATAA
ACGCAACTAGCGTGCCGTGTCGTTTTCAGCCCATGGTATATTACTGCTAG
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