mRNA_H-elongata_contig109113.737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109113.737.1
Unique NamemRNA_H-elongata_contig109113.737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: D7FWD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.390e-29
Identity = 54/74 (72.97%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:   16 TAGSKSLQTYDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAIQSKT 237
            TAGS++LQ+YD+VAAVPCCQRSFE+LC  SDVDVIS+P G+RLP +I KKN DAAL+RGAVFE++YSQAIQ+ +
Sbjct:  123 TAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVSYSQAIQNSS 196
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: A0A7S2SF94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SF94_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.010e-10
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   28 KSLQTYDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAIQ 228
            K  +TY++VA  P  QR++EL C Q  VDV+S+   +RL   I +K VDAAL +GA FE+ Y QA++
Sbjct:   46 KIAETYNVVAIQPTSQRTWELACEQHGVDVVSLDCTQRLRFHITRKQVDAALEKGAKFELLYGQAMK 112
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: A0A7S2WPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPG3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.890e-10
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:   28 KSLQTYDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAIQ 228
            K  +TY++VA  P  QR++EL C Q  VDV+S+   +RL   I +K VDAAL +GA FE+ Y QA++
Sbjct:  119 KIAETYNVVAIQPTSQRTWELACEQHGVDVVSLDCTQRLRFHITRKQVDAALEKGAKFELLYGQAMK 185
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: A0A8H4CZK5_9ASCO (Uncharacterized protein n=2 Tax=[Candida] haemuloni TaxID=45357 RepID=A0A8H4CZK5_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 1.810e-7
Identity = 26/69 (37.68%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   43 YDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAIQSKTRGES 249
            +D++A  P  +++ +L     D+D++S+P+G RLP  IK K V  AL +G  FEI YS  I      E+
Sbjct:  106 FDLIAVQPSTEKALQLTTTNLDIDIVSLPMGTRLPFFIKHKTVGQALEKGMKFEICYSGLISGPASYET 174
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: A0A835LMY9_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LMY9_9MAGN)

HSP 1 Score: 55.1 bits (131), Expect = 3.650e-7
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   34 LQTYDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAI 225
            L+TYD+VAA P  Q +F+ +C  ++VD+I+M   + +P  IK   + A + RG  FEITYS  +
Sbjct:  129 LKTYDLVAARPLNQPTFDHVCKYAEVDIIAMDFSQWVPFRIKYPILQAVIKRGIYFEITYSSLL 192
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: A0A7S2N5Q4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2N5Q4_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 4.490e-7
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   43 YDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAIQ 228
            Y++ AA P    ++  +C +S+ DVIS+PL  +L   I++K+VDA L RG +FEI ++ A++
Sbjct:   14 YNVFAARPLTADAWRAVCERSEFDVISLPLHDKLLFPIRRKDVDALLQRGCIFEIEFAPALR 75
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: A0A2P7YGW2_9ASCO (Uncharacterized protein n=3 Tax=Metschnikowiaceae incertae sedis TaxID=2937349 RepID=A0A2P7YGW2_9ASCO)

HSP 1 Score: 53.5 bits (127), Expect = 2.160e-6
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   43 YDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAIQSKTRGE 246
            +D++   P  +++ +L     D+D++S+P+G RLP  IK K V  AL +G  FEI Y   I    + E
Sbjct:   85 FDLIGVQPTTEKALQLTTANLDIDIVSLPMGTRLPFFIKHKTVGQALEKGMKFEICYLGLISGPAQYE 152
[Close]
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Match: A0A7S3CLF9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CLF9_9SPIT)

HSP 1 Score: 50.4 bits (119), Expect = 1.480e-5
Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   82 FELLCCQSDVDVISMPLGRRLPISIKKKNVDAALARGAVFEITYSQAI 225
            FE +C ++D D++S+  G R P   +K ++  ALARGAV E+ Y QA+
Sbjct:   85 FEQVCVKTDCDIVSVDCGERSPFFFQKSHIKQALARGAVIELNYGQAL 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109113.737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FWD2_ECTSI1.390e-2972.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SF94_9STRA2.010e-1047.76Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WPG3_9STRA3.890e-1047.76Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8H4CZK5_9ASCO1.810e-737.68Uncharacterized protein n=2 Tax=[Candida] haemulon... [more]
A0A835LMY9_9MAGN3.650e-742.19Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A7S2N5Q4_9DINO4.490e-740.32Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A2P7YGW2_9ASCO2.160e-635.29Uncharacterized protein n=3 Tax=Metschnikowiaceae ... [more]
A0A7S3CLF9_9SPIT1.480e-543.75Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109113contigH-elongata_contig109113:1062..2071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue9e-24
Seed eggNOG ortholog2880.D7FWD2
Preferred nameRPP30
KEGG koko:K03539,ko:K07881
KEGG Pathwayko03008,ko03013,ko04152,map03008,map03013,map04152
GOsGO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
EggNOG free text desc.ribonuclease P activity
EggNOG OGsCOG1603@1,KOG2363@2759
EC3.1.26.5
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.6398616-CDS-H-elongata_contig109113:1061..12291622929618.6398616-CDS-H-elongata_contig109113:1061..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109113 1062..1229 +
1691679093.5308757-CDS-H-elongata_contig109113:1061..12291691679093.5308757-CDS-H-elongata_contig109113:1061..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109113 1062..1229 +
1622929618.6578057-CDS-H-elongata_contig109113:1984..20711622929618.6578057-CDS-H-elongata_contig109113:1984..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109113 1985..2071 +
1691679093.5430746-CDS-H-elongata_contig109113:1984..20711691679093.5430746-CDS-H-elongata_contig109113:1984..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109113 1985..2071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109113.737.1prot_H-elongata_contig109113.737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109113 1062..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109113.737.1

>prot_H-elongata_contig109113.737.1 ID=prot_H-elongata_contig109113.737.1|Name=mRNA_H-elongata_contig109113.737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MNRRQTAGSKSLQTYDIVAAVPCCQRSFELLCCQSDVDVISMPLGRRLPI
SIKKKNVDAALARGAVFEITYSQAIQSKTRGESR*
back to top

mRNA from alignment at H-elongata_contig109113:1062..2071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109113.737.1 ID=mRNA_H-elongata_contig109113.737.1|Name=mRNA_H-elongata_contig109113.737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1010bp|location=Sequence derived from alignment at H-elongata_contig109113:1062..2071+ (Himanthalia elongata Himel1 dioecious)
ATGAATCGACGACAGACCGCCGGAAGCAAGAGCCTCCAGACCTACGATAT
CGTGGCGGCCGTCCCGTGCTGCCAGCGGTCGTTCGAGCTTCTCTGCTGCC
AAAGCGATGTCGATGTCATCTCGATGCCCCTCGGCAGACGCCTGCCCATT
TCTATAAAAAAAAAGAACGTGAGTCTGCTGCTGTTGTTGCTGCGACTGTG
GGCTGTCTCTGCTGCTGGTCATATTTTACGTTCCTTTATGTGCAAGCGCG
CAAAACGTTCCCATAATTTTCATATCATATCATATATATATATATATATA
TATATATAGACACAAAAGTAGTATTTCGTTTATATTTTAGGGGGGGCGGG
AAGGGGTCTAATAATAGTATGTTTCAGCCTCATAAAGGGGGGGGATAGTG
GGGGGGCGAGGGATCTGTCTTTGAATTGGAGACCGAGCGTAGTCCGTCCG
CTGAAGTTGATTGCCGCTTGCCTCTCTCCGATTTTTGTGAAAACTTTTTT
TTTCTTCTGTTTTTTCTTCTGTTTTTTTTCTCCTTTTTTTCTTTCAAGCC
CGAAACATCCTATTGTCTTTGATCATACGTTTTCCTTCTTTTTTTTTACC
CTGGAACATGATGTGATCACCATGCTTGCGCGCATCTTGTGGAACTTTTT
TGTTTTTTTCCTCACGTCGGAACAGACCTTTTGCAATAATAATGGAATGT
TAACTCTACCGTGCAACATACCAACTAAAATATTATATATATACTAGTAT
ATATTTTTTAAATAATATATATAAATATAAATATGTATATATACAGTAGA
CATAAACATGGGCATATTTTAGAAAATATTTGTAGATATTGTCTTAGGTA
TTATAGGAAATTCTTACGATTACCACCATGTCTTGTCTTAACTGTGTCTT
CTCTTGTTCCACCGAGCCAACAGGTAGATGCCGCATTAGCGAGAGGCGCA
GTGTTCGAGATTACCTACAGCCAGGCCATACAAAGTAAGACACGCGGCGA
AAGTCGTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109113:1062..2071+

>mRNA_H-elongata_contig109113.737.1 ID=mRNA_H-elongata_contig109113.737.1|Name=mRNA_H-elongata_contig109113.737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig109113:1062..2071+ (Himanthalia elongata Himel1 dioecious)
ATGAATCGACGACAGACCGCCGGAAGCAAGAGCCTCCAGACCTACGATAT
CGTGGCGGCCGTCCCGTGCTGCCAGCGGTCGTTCGAGCTTCTCTGCTGCC
AAAGCGATGTCGATGTCATCTCGATGCCCCTCGGCAGACGCCTGCCCATT
TCTATAAAAAAAAAGAACATGAATCGACGACAGACCGCCGGAAGCAAGAG
CCTCCAGACCTACGATATCGTGGCGGCCGTCCCGTGCTGCCAGCGGTCGT
TCGAGCTTCTCTGCTGCCAAAGCGATGTCGATGTCATCTCGATGCCCCTC
GGCAGACGCCTGCCCATTTCTATAAAAAAAAAGAACGTAGATGCCGCATT
AGCGAGAGGCGCAGTGTTCGAGATTACCTACAGCCAGGCCATACAAAGTA
AGACACGCGGCGAAAGTCGTTAAGTAGATGCCGCATTAGCGAGAGGCGCA
GTGTTCGAGATTACCTACAGCCAGGCCATACAAAGTAAGACACGCGGCGA
AAGTCGTTAA
back to top