mRNA_H-elongata_contig10910.735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10910.735.1
Unique NamemRNA_H-elongata_contig10910.735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10910.735.1 vs. uniprot
Match: D7FJJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ5_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.850e-92
Identity = 173/311 (55.63%), Postives = 208/311 (66.88%), Query Frame = 1 
Query:    1 ASQASATDLRLWSSYVQLLTILGDRDEAIKIAEKALSLVQALPESKKRMSAEMFWVAFRLHAGLPLTPRDLHVGEDSPPHAHPGAGAALGSLFERGENGGGKRDQALLMLCSFAEGRFVRPKKKANNIKKKLKRDGKASTSGGSDGSDGSAAISPPRLMAARRLMADRVARLAEEELPREDGISSLPHGLLDMTPSFMYHSIAWVWLEYLTRGPDEAEKAMAACLTMVKIKINNEAQTGDSEDDGGRSPGGDESR--LRGAASGYTPYTWDVVPGDTALGVCLERMHRSFSEVAVMAQRYDSATTGPRRVR 927
            ASQASATDLRLWSSYVQLL +LG   EAIK+AEKALS+VQALPE KK  SAE+FW+ FRLHAGLPL+PRD H GED            +G+LFE G  G   R+ ALLMLCSFAEG F RPK K+    K+ KRDGK S++        S  I+PPRL+AAR+LMADRVAR A +E+ R+     +  G LDMTP FMYH+IAWVW+E+L+ G D AE AM+ CL + +        TG  E  G  +     S   + G ++G  PY W+VVP  TALGVCLERMHR FSE+  +AQRY+    GPRRVR
Sbjct:  517 ASQASATDLRLWSSYVQLLALLGSTQEAIKVAEKALSMVQALPEDKKGFSAELFWLTFRLHAGLPLSPRDPHPGEDD---------ETVGNLFETGNKGRHGREMALLMLCSFAEGGFKRPKSKS----KRSKRDGKGSSAE-------SILITPPRLLAARKLMADRVAREAAQEVQRD-----VADGALDMTPPFMYHAIAWVWMEFLSVGLDAAEDAMSKCLGLAQPSTT---PTGSGEASGVAAESSSSSNFGIGGTSTGNKPYIWNVVPEHTALGVCLERMHRGFSELMTLAQRYNPVDAGPRRVR 799
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BLAST of mRNA_H-elongata_contig10910.735.1 vs. uniprot
Match: A0A6H5JC63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC63_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 4.150e-86
Identity = 165/312 (52.88%), Postives = 203/312 (65.06%), Query Frame = 1 
Query:    1 ASQASATDLRLWSSYVQLLTILGDRDEAIKIAEKALSLVQALPESKKRMSAEMFWVAFRLHAGLPLTPRDLHVGEDSPPHAHPGAGAALGSLFERGENGGGKRDQALLMLCSFAEGRFVRPKKKANNIKKKLKRDGKASTSGGSDGSDGSAAISPPRLMAARRLMADRVARLAEEELPREDGISSLPHGLLDMTPSFMYHSIAWVWLEYLTRGPDEAEKAMAACLTMVK---IKINNEAQTGDSEDDGGRSPGGDESRLRGAASGYTPYTWDVVPGDTALGVCLERMHRSFSEVAVMAQRYDSATTGPRRVR 927
            ASQASATDLRLWSSYVQLL +LG   EAIK+AEKALS+VQALPE KK  SAE+FW+ FRLHAGLPL+PRD H GED            +G+LFE G  G   R+ ALLMLCSFAEG F RPK K+    K+ KRDGK S++           I+PPRL+AAR+LMADRVAR A +E+ R+  ++    G LDMTP FMYH+IAWVW+E+++ G   A+ AM+ CL + +                          +  + G ++G  PYTW+VVP  TALGVCLERMHR FSE+  +AQRY+    GPRRVR
Sbjct: 1057 ASQASATDLRLWSSYVQLLALLGSTQEAIKVAEKALSMVQALPEDKKGFSAELFWLTFRLHAGLPLSPRDPHPGEDD---------ETVGNLFETGNKGRNGREMALLMLCSFAEGGFKRPKSKS----KRSKRDGKGSSAE-------PILITPPRLLAARKLMADRVAREAAQEVQRDADVAD---GALDMTPPFMYHAIAWVWMEFISVGLGAAQDAMSKCLELAQPSXXXXXXXXXXXXXXXXXXXXXXXXKFGIGGTSTGNKPYTWNVVPEHTALGVCLERMHRGFSELMTLAQRYNPVDAGPRRVR 1345
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BLAST of mRNA_H-elongata_contig10910.735.1 vs. uniprot
Match: A0A835ZIY3_9STRA (NRDE-2, necessary for RNA interference-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.120e-23
Identity = 98/314 (31.21%), Postives = 134/314 (42.68%), Query Frame = 1 
Query:    1 ASQASATDLRLWSSYVQLLTILGDRDEAIKIAEKALSLVQALPESKKRMSAEMFWVAFRLHAGLPLTPRDLHVGEDSP---PHAHPGAGAALGSLFE--RGENGGGKRDQALLMLCSFAEGRFVRPKKKANNIKKKLKRDGKASTSGGSDGSDGSAAISPPRLMAARRLMADRVARLAEEELPREDGISSLPHGLLDMTPSFMYHSIAWVWLEYLTRGPDEAEKAMAACLTMVKIKINNEAQTGDSEDDGGRSPGGDESRLRGAASGYTPYTWDVVPGDTALGVCLERMHRSFSEVAVMAQRYDSATTGPRRVR 927
            AS+ASATDLRLW +YV+L   LG    A++ A +AL+ V+ALP +++R +  +FW AFRL AGLPL+              P A  G+ A+ G + E       G  RD AL +L S AEG + +P   A     +                         RL+ ARRL A+ + R  E E  R           LD TP F Y++ A  WL+  T G   A  AM + L  + +         D+     R+P      ++G      PY W +     A  V  ER H +  E    A     A   PR  R
Sbjct: 1221 ASEASATDLRLWCAYVELEDALGAPATALRAARRALASVEALPPAQRRHAPALFWAAFRLTAGLPLSAAXXXXXXXXXXXTPQAPAGSNASGGCVAELCSPTGSGAARDAALHLLLSMAEGSYEKPPAVAAAAALQXXXXXXXXXXXXX--------XXXXRLVRARRLFAEHLTR--EAEALRSAXXXXXXXXGLDATPPFFYYAAALTWLQLATDGALAAAAAMQSALLQLLVGQTPANAPQDAPAAAARTPTSRSPHVQGLG----PYEWQLASDAGARAVAAERCHLALCEALAAAAAAGDAAA-PRAER 1519
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10910.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJJ5_ECTSI1.850e-9255.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC63_9PHAE4.150e-8652.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZIY3_9STRA2.120e-2331.21NRDE-2, necessary for RNA interference-domain-cont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10910contigH-elongata_contig10910:455..2662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.8
Seed ortholog evalue2.3e-80
Seed eggNOG ortholog2880.D7FJJ5
GOsGO:0001672,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010847,GO:0016043,GO:0016246,GO:0016441,GO:0016458,GO:0019219,GO:0019222,GO:0031047,GO:0031048,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031445,GO:0032991,GO:0033043,GO:0033044,GO:0035194,GO:0040029,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0071013,GO:0071840,GO:0080090,GO:1902275,GO:1902494,GO:1902679,GO:1902802,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.NRDE-2, necessary for RNA interference, domain containing
EggNOG OGsKOG1972@1,KOG1972@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006350.1
Exons5
Model size939
Cds size939
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10910.735.1prot_H-elongata_contig10910.735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10910 455..2662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.1386526-CDS-H-elongata_contig10910:454..6091622929618.1386526-CDS-H-elongata_contig10910:454..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 455..609 -
1691679093.364449-CDS-H-elongata_contig10910:454..6091691679093.364449-CDS-H-elongata_contig10910:454..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 455..609 -
1622929618.213064-CDS-H-elongata_contig10910:1159..14021622929618.213064-CDS-H-elongata_contig10910:1159..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 1160..1402 -
1691679093.3748107-CDS-H-elongata_contig10910:1159..14021691679093.3748107-CDS-H-elongata_contig10910:1159..1402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 1160..1402 -
1622929618.231529-CDS-H-elongata_contig10910:1634..17761622929618.231529-CDS-H-elongata_contig10910:1634..1776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 1635..1776 -
1691679093.3841124-CDS-H-elongata_contig10910:1634..17761691679093.3841124-CDS-H-elongata_contig10910:1634..1776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 1635..1776 -
1622929618.2509847-CDS-H-elongata_contig10910:2041..23201622929618.2509847-CDS-H-elongata_contig10910:2041..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 2042..2320 -
1691679093.3994207-CDS-H-elongata_contig10910:2041..23201691679093.3994207-CDS-H-elongata_contig10910:2041..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 2042..2320 -
1622929618.2747068-CDS-H-elongata_contig10910:2542..26621622929618.2747068-CDS-H-elongata_contig10910:2542..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 2543..2662 -
1691679093.409804-CDS-H-elongata_contig10910:2542..26621691679093.409804-CDS-H-elongata_contig10910:2542..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10910 2543..2662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10910.735.1

>prot_H-elongata_contig10910.735.1 ID=prot_H-elongata_contig10910.735.1|Name=mRNA_H-elongata_contig10910.735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
ASQASATDLRLWSSYVQLLTILGDRDEAIKIAEKALSLVQALPESKKRMS
AEMFWVAFRLHAGLPLTPRDLHVGEDSPPHAHPGAGAALGSLFERGENGG
GKRDQALLMLCSFAEGRFVRPKKKANNIKKKLKRDGKASTSGGSDGSDGS
AAISPPRLMAARRLMADRVARLAEEELPREDGISSLPHGLLDMTPSFMYH
SIAWVWLEYLTRGPDEAEKAMAACLTMVKIKINNEAQTGDSEDDGGRSPG
GDESRLRGAASGYTPYTWDVVPGDTALGVCLERMHRSFSEVAVMAQRYDS
ATTGPRRVRPWV*
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mRNA from alignment at H-elongata_contig10910:455..2662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10910.735.1 ID=mRNA_H-elongata_contig10910.735.1|Name=mRNA_H-elongata_contig10910.735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2208bp|location=Sequence derived from alignment at H-elongata_contig10910:455..2662- (Himanthalia elongata Himel1 dioecious)
GCGAGTCAGGCGAGCGCGACAGATCTACGACTGTGGAGCTCCTACGTGCA
GCTCCTTACGATCCTGGGAGATCGTGACGAGGCCATCAAGATTGCAGAGA
AAGCCCTCTCCCTGGTGCAGGTGGGGCAAGAAGGTCAAGTCGGGGGTAGG
AACTGACCACAGCCACGGGCTCTCCTGTTTTATCTTCTTTTACGCGTCCT
GCATATCGAAAATTATAGGTACGGTAGTATACTTTTGCTCATACCATTCT
ACAAGAAGCCTCAGTATTCACGTAGAGCATTGCCGTTCCTGCGTGCGTCC
TGCAGTCCTTAAACCCTTGACCCGTCCCCTAACCCCTGACAGGCGTTACC
CGAAAGCAAGAAACGTATGTCTGCCGAGATGTTCTGGGTTGCCTTTCGTC
TTCACGCTGGTCTGCCCCTTACTCCGCGCGACCTTCACGTGGGCGAGGAC
AGCCCGCCTCATGCTCACCCTGGCGCTGGTGCAGCCTTGGGCAGCCTCTT
CGAACGCGGCGAAAACGGGGGCGGTAAGCGGGATCAGGCCCTCCTCATGC
TGTGCAGCTTCGCCGAGGGCCGCTTCGTTCGGCCAAAGAAGAAGGCGAAT
AATATAAAGAAAAAACTCAAGGTGTGACCTGGGCCTAATTCGTCGCTTTG
CCCCGTCATGTTGTACTAAGACCCGCCGCCCGTCCGTAGGGTTGTTCGAA
CGATGCAGGGGCTGGCGTGCGATCGTCTATCCTTAAGGGGTTAAAGAGGT
TTCCCAACTCTGTTGTTTCCTTCCTGATCTACGTCAAAATGCCACCGAGC
TAACCTGGGTCATATGATGTTATACTTCGTATACTGTGTTTAAATGTTTT
GTTGTTGTTGTTGTTGTTATTGTGGTTATTGAGCAGCGAGATGGCAAAGC
TTCGACTTCCGGTGGTTCCGATGGTTCCGACGGTTCGGCAGCAATATCGC
CACCTCGTCTGATGGCGGCAAGGAGGCTGATGGCTGATCGTGTTGCTCGG
TTAGCGGAAGAAGAGCTTCCTCGAGAGGGTGAGGATGCAGGGATGAACCC
CAGTAGGTTCGAACCGTCCGGACACGCTATCCTTCTGGTTCTCGAATAAA
ATAATGGTTGGTGATTCCGCGCCGTTTCGTGACTGAGGTTCCAAAGCCGT
TTCGTTTTCGACGATAGCGAATGAGCACTAAATCGGATATTCCAGCCGCC
TCTTAAGGGAATTGACGTGACCACTGCATGGTCTGTACTCCCCCGCATCA
TCGGCGACAGACGGCATTTCGAGCCTGCCCCATGGTCTTTTGGACATGAC
GCCATCCTTCATGTATCACTCCATCGCTTGGGTCTGGCTGGAGTATCTCA
CCAGAGGACCGGACGAAGCCGAAAAGGCCATGGCGGCATGCCTGACCATG
GTGAAGATCAAGATAAACAACGAAGCGCAGACCGGTGACAGCGAGGACGA
CGGTGGTCGCTCCCCGGGAGGAGATGAGTCTCGGCTGAGAGGAGCAGCGA
GCGGTGAGCACTTAAGCCCATTCTTGGCCGGTAGTCCGGTTGCCCTGTAG
GAGGTGTTTGTTTCTTGGCGCTCGACCCTTCGCGGGAGTATATGAACAGA
ATCTCTGGGGTCTAATGGTCGCCCCAATCGGGAAAACTCATCGCGAGCGT
CAGAGGAGCTCGGGTGGTGAGGCAGTCTTTAGCCACACATGTTTATCCTC
TGCCGTTGAACAATGTGCGATCCAGCTGTTTGTGTTGTTGGGGCAAGACC
TTTGGCTGGTCCACTCGTTTCGAAATACGATATGTCCAGCTAATGATCGC
CTCTTTGCCGGGGTTGATCGAAACCGTCGCACTTTTGGCGGACCCGGACA
TGGACATGAAACCCTTGCATGATCTTGCTCCAAAGTTTTGGTGGCGGATG
CATCACGGTGCTGCAGATGATGTTGACGGTATTTCACGGAGCAATGATGT
TGACGGTTGTGTGGTTGTTTCTGTTAATTGACAGTCTCGGATTGCGAATG
CGTACTTTCTCTCTCCTTGCGTACCATTTTGTTTTTCTCTTTCCTGAAAC
AAGGCTACACCCCCTACACATGGGACGTGGTTCCTGGTGACACGGCCCTC
GGCGTGTGTCTGGAGCGCATGCACAGGTCTTTCAGCGAAGTTGCCGTGAT
GGCACAACGCTACGACTCCGCGACAACCGGGCCGCGCCGGGTGAGGCCCT
GGGTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig10910:455..2662-

>mRNA_H-elongata_contig10910.735.1 ID=mRNA_H-elongata_contig10910.735.1|Name=mRNA_H-elongata_contig10910.735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig10910:455..2662- (Himanthalia elongata Himel1 dioecious)
GCGAGTCAGGCGAGCGCGACAGATCTACGACTGTGGAGCTCCTACGTGCA
GCTCCTTACGATCCTGGGAGATCGTGACGAGGCCATCAAGATTGCAGAGA
AAGCCCTCTCCCTGGTGCAGGCGAGTCAGGCGAGCGCGACAGATCTACGA
CTGTGGAGCTCCTACGTGCAGCTCCTTACGATCCTGGGAGATCGTGACGA
GGCCATCAAGATTGCAGAGAAAGCCCTCTCCCTGGTGCAGGCGTTACCCG
AAAGCAAGAAACGTATGTCTGCCGAGATGTTCTGGGTTGCCTTTCGTCTT
CACGCTGGTCTGCCCCTTACTCCGCGCGACCTTCACGTGGGCGAGGACAG
CCCGCCTCATGCTCACCCTGGCGCTGGTGCAGCCTTGGGCAGCCTCTTCG
AACGCGGCGAAAACGGGGGCGGTAAGCGGGATCAGGCCCTCCTCATGCTG
TGCAGCTTCGCCGAGGGCCGCTTCGTTCGGCCAAAGAAGAAGGCGAATAA
TATAAAGAAAAAACTCAAGGCGTTACCCGAAAGCAAGAAACGTATGTCTG
CCGAGATGTTCTGGGTTGCCTTTCGTCTTCACGCTGGTCTGCCCCTTACT
CCGCGCGACCTTCACGTGGGCGAGGACAGCCCGCCTCATGCTCACCCTGG
CGCTGGTGCAGCCTTGGGCAGCCTCTTCGAACGCGGCGAAAACGGGGGCG
GTAAGCGGGATCAGGCCCTCCTCATGCTGTGCAGCTTCGCCGAGGGCCGC
TTCGTTCGGCCAAAGAAGAAGGCGAATAATATAAAGAAAAAACTCAAGCG
AGATGGCAAAGCTTCGACTTCCGGTGGTTCCGATGGTTCCGACGGTTCGG
CAGCAATATCGCCACCTCGTCTGATGGCGGCAAGGAGGCTGATGGCTGAT
CGTGTTGCTCGGTTAGCGGAAGAAGAGCTTCCTCGAGAGGCGAGATGGCA
AAGCTTCGACTTCCGGTGGTTCCGATGGTTCCGACGGTTCGGCAGCAATA
TCGCCACCTCGTCTGATGGCGGCAAGGAGGCTGATGGCTGATCGTGTTGC
TCGGTTAGCGGAAGAAGAGCTTCCTCGAGAGGACGGCATTTCGAGCCTGC
CCCATGGTCTTTTGGACATGACGCCATCCTTCATGTATCACTCCATCGCT
TGGGTCTGGCTGGAGTATCTCACCAGAGGACCGGACGAAGCCGAAAAGGC
CATGGCGGCATGCCTGACCATGGTGAAGATCAAGATAAACAACGAAGCGC
AGACCGGTGACAGCGAGGACGACGGTGGTCGCTCCCCGGGAGGAGATGAG
TCTCGGCTGAGAGGAGCAGCGAGCGACGGCATTTCGAGCCTGCCCCATGG
TCTTTTGGACATGACGCCATCCTTCATGTATCACTCCATCGCTTGGGTCT
GGCTGGAGTATCTCACCAGAGGACCGGACGAAGCCGAAAAGGCCATGGCG
GCATGCCTGACCATGGTGAAGATCAAGATAAACAACGAAGCGCAGACCGG
TGACAGCGAGGACGACGGTGGTCGCTCCCCGGGAGGAGATGAGTCTCGGC
TGAGAGGAGCAGCGAGCGGCTACACCCCCTACACATGGGACGTGGTTCCT
GGTGACACGGCCCTCGGCGTGTGTCTGGAGCGCATGCACAGGTCTTTCAG
CGAAGTTGCCGTGATGGCACAACGCTACGACTCCGCGACAACCGGGCCGC
GCCGGGTGAGGCCCTGGGTCTAGGCTACACCCCCTACACATGGGACGTGG
TTCCTGGTGACACGGCCCTCGGCGTGTGTCTGGAGCGCATGCACAGGTCT
TTCAGCGAAGTTGCCGTGATGGCACAACGCTACGACTCCGCGACAACCGG
GCCGCGCCGGGTGAGGCCCTGGGTCTAG
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