mRNA_H-elongata_contig109083.731.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A6H5L3G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G6_9PHAE) HSP 1 Score: 112 bits (281), Expect = 8.590e-29 Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 10 QVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREV----------DPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
+VFTWGHG+TGALGHG ED+P PR+V FG R D ++LA+SV+CGAWHT+VLT +GKV+AFGDGFTGQLGLED
Sbjct: 64 KVFTWGHGSTGALGHGVAEDEPTPRMVSGFGRDVDRSATQGTDEQDGPDADVLATSVACGAWHTLVLTKAGKVYAFGDGFTGQLGLED 151
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI) HSP 1 Score: 112 bits (281), Expect = 3.230e-27 Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 10 QVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREV----------DPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
+VFTWGHG+TGALGHG ED+P PR+V FG +R D ++LA+SV+CGAWHT+VLT +GKV AFGDGFTGQLGLED
Sbjct: 1779 KVFTWGHGSTGALGHGVAEDEPTPRMVSGFGRDEARSAPQGAGEQDDPDADILATSVACGAWHTLVLTKAGKVHAFGDGFTGQLGLED 1866
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A0P1B3E4_PLAHL (Regulator of chromosome condensation-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3E4_PLAHL) HSP 1 Score: 69.7 bits (169), Expect = 4.510e-12 Identity = 37/80 (46.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 4 CTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
C +++TWG G G LGHGD D+ PR V Q+ S SCG HTVVLT G VF+FG G G+LGL D
Sbjct: 515 CGELYTWGSGEDGRLGHGDMRDRTVPRKVMTLLRQN---------VVSASCGGAHTVVLTEKGSVFSFGRGRNGRLGLGD 585
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: K3WC09_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC09_GLOUD) HSP 1 Score: 68.9 bits (167), Expect = 7.190e-12 Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 10 QVFTWGHGNTGALGHGDNEDQPQP-RLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLED 243
+VFTWG GN+GALG+G E++ P ++V P+ + R+ +S++CG++HT+V T +GK++ +GD GQLG E+
Sbjct: 246 EVFTWGFGNSGALGNGTRENRLLPDKIVGPWAAEQDRD-GKAAAVTSIACGSYHTLVSTSTGKLYGWGDSAAGQLGAEN 323
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: H3C3U0_TETNG (HECT domain-containing protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C3U0_TETNG) HSP 1 Score: 67.4 bits (163), Expect = 2.920e-11 Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 1 MCTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLG 234
M +VFT+G G G LGHG D+ +PRLV+ G AS +SCG++HT+VL SG ++AFG G GQ+G
Sbjct: 255 MNGEVFTFGEGCHGQLGHGSTADELRPRLVESVGRH----------ASQISCGSYHTLVLGSSGHIWAFGSGNKGQIG 322
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: H3C0L9_TETNG (HECT domain-containing protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C0L9_TETNG) HSP 1 Score: 67.4 bits (163), Expect = 2.920e-11 Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 1 MCTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLG 234
M +VFT+G G G LGHG D+ +PRLV+ G AS +SCG++HT+VL SG ++AFG G GQ+G
Sbjct: 253 MNGEVFTFGEGCHGQLGHGSTADELRPRLVESVGRH----------ASQISCGSYHTLVLGSSGHIWAFGSGNKGQIG 320
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A2P4XMA0_9STRA (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMA0_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 4.020e-11 Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 13 VFTWGHGNTGALGHGDNEDQPQPRLVQ-PFGHQSSREVDPNLLAS------SVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLE 240
VFTWG G++GALGHG+ ++ +P+L++ P+ S+ E D L S S++CG++HT+ T G ++ +GD GQLG+E
Sbjct: 816 VFTWGFGSSGALGHGNQDNCLEPKLLEGPWTKGSNLEFDGEHLTSEASIVTSIACGSYHTLASTSDGVLYGWGDAAAGQLGVE 898
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A662XMD5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMD5_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 7.520e-11 Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 13 VFTWGHGNTGALGHGDNEDQPQP-RLVQPFGHQSSREVDPNL-LASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLE 240
VFTWG G++GALGHGD +++ P RL P+ Q +++ + + ++V+CG++HT+ G ++ +GD GQLG+E
Sbjct: 1376 VFTWGFGSSGALGHGDRDNRLVPQRLAGPWTRQQGEDLEIDAAVVTAVACGSYHTLACLSDGVLYGWGDAAAGQLGIE 1453
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: H3GZM4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZM4_PHYRM) HSP 1 Score: 66.2 bits (160), Expect = 7.550e-11 Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 13 VFTWGHGNTGALGHGDNEDQPQPRLVQ-PFGHQSSREVDPNLLAS------SVSCGAWHTVVLTVSGKVFAFGDGFTGQLGLE 240
VFTWG G++GALGHG+ ++ +PRL++ P+ E D L+S S++CG +HT+ T G ++ +GD GQLG+E
Sbjct: 1482 VFTWGFGSSGALGHGNRDNCLEPRLLEGPWTSSVDVEFDGENLSSESPVVTSIACGGYHTLAATSGGVLYGWGDAAAGQLGVE 1564
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Match: A0A8C6U8S7_9GOBI (Uncharacterized protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6U8S7_9GOBI) HSP 1 Score: 65.1 bits (157), Expect = 1.020e-10 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 4 CTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVSCGAWHTVVLTVSGKVFAFGDGFTGQLG 234
C QV+T+G G+ G LGH ++ +PRLV+ + LAS ++CG HT+VL+ SG+ +AFGDG GQ+G
Sbjct: 173 CGQVWTFGDGSHGQLGHNSTANELKPRLVEGL----------DGLASQIACGRRHTLVLSASGRCWAFGDGVKGQMG 239 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109083.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig109083.731.1 >prot_H-elongata_contig109083.731.1 ID=prot_H-elongata_contig109083.731.1|Name=mRNA_H-elongata_contig109083.731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp MCTQVFTWGHGNTGALGHGDNEDQPQPRLVQPFGHQSSREVDPNLLASSVback to top mRNA from alignment at H-elongata_contig109083:1546..1851- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig109083.731.1 ID=mRNA_H-elongata_contig109083.731.1|Name=mRNA_H-elongata_contig109083.731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig109083:1546..1851- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig109083:1546..1851- >mRNA_H-elongata_contig109083.731.1 ID=mRNA_H-elongata_contig109083.731.1|Name=mRNA_H-elongata_contig109083.731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig109083:1546..1851- (Himanthalia elongata Himel1 dioecious)back to top |