mRNA_H-elongata_contig10903.729.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2N9G942_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G942_FAGSY) HSP 1 Score: 192 bits (488), Expect = 7.660e-49 Identity = 172/608 (28.29%), Postives = 262/608 (43.09%), Query Frame = 1
Query: 1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVPTDNGGK-FEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTG----SISVTRQIVERQTV----EWIDGPEKTGGHDTSSDDRDMK--STGGETILGRETPQLNVQELGQE--------------------------------------------------------QQXXXXXXXXXXXXXXXXXXXXXXXVGQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYIS-PRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRK--ITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
DV GP+ + GG Y + F++D +R+ + + KS+S + IK + +D GG+ F EF+ L I + TP TPQ+N VAER L + ++M + ++ W A+ + N+ T S +PYELW P+ H++ +G + R+S +K+ P+ +C+F+G P TG + S + V R + ++ +T +DR M S E + T NVQE + Q +G KVE YK RLVA+G+ Q G+ Y E +SP SIR+LL+ A D E+ D K AFL I EE+Y+ P M L F +KD+G+A Y +G ++ R+RK R L + Q Y++ ++ +F ++ +K + G+ LSK P EE+E+MRN PY AVG+LM+ TRP E +D R+S+SG V L KGAISW + TA T+E EY+ EA KE +++R+
Sbjct: 506 DVCGPLTHMARGGFFYFITFIDDHSRYGYLYLMKHKSESFEKFKEFRNEVEKQTGKCIKILRSDRGGEYFLDEFKDHLKDNGIISQPTPLGTPQHNGVAERRNRTLLDMVRSMMSMSEFPVS-----FWGYALETAIYLLNRVPTKSVPN--TPYELWTSKKPSLNHIKIWGCPSHVRKS-NVDKLGPRSDRCLFIGYP-KMSTGFYFYNPSEQKVFVSRNAIFLEEDYSLNESRTKVTLEEQNDRPMTVPSENNEEQVIVPTEPSNVQEPRRSIRIIRPPVRLTLLNEIYQMESDGFDNDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTSKVETYKARLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIATHYDYEIWQMDVKTAFLNGFIREEIYMDQPVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFLPFKHGVH-LSKKMCPNTQEEREQMRNCPYASAVGSLMYAMLCTRPRHLLCS----EHYIDHRKSISGFVFTLGKGAISWRRCKQDTTADSTTEVEYIAASEAAKEAVWIRK 1099
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5KBD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD2_9PHAE) HSP 1 Score: 150 bits (379), Expect = 1.820e-37 Identity = 93/251 (37.05%), Postives = 139/251 (55.38%), Query Frame = 1
Query: 937 VHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASA-------------------------VRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
V+ E Y+PT + +S+ +L A A ++ LRHFD K AF+++D+DE +++ FV +L +K++GD R+Y GC R+ A LKI Q Y E + +F ++ G++I +G+ LS+ D+ EE+ ++P+RE +G+LMW AT TRPDIA+A AD+ RRSVSG ++M G ISWFSR +K T+E EY +L + +KEVLFLRQ
Sbjct: 6 VNCGETYAPTVAVSSVSLLAAMACEQNLSLRHFDIKQAFVQSDLDEHVFMRLPEGCGRFVRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAGMRYGLVTWVLHSGGVVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVKLSTTEAEYFSLADVMKEVLFLRQ 249
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2N9EWE6_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EWE6_FAGSY) HSP 1 Score: 152 bits (384), Expect = 5.780e-37 Identity = 97/252 (38.49%), Postives = 141/252 (55.95%), Query Frame = 1
Query: 865 VGQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRT-TMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRK-ITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
+G KVE YK RLVA+G+ Q + Y E +SP SIR+LL+ A D E+ D K AFL I EE+Y+ M L F +KD+G+A Y + ++ R+RK R L + Q Y++ ++ +F ++ +K + LSK + EE+E+MRN PY A+G+LM+ TRPDI A +D +D R+S+SG V L KGAISW S + TA T+E EY+ EA KE +++R+
Sbjct: 118 LGPTGKVETYKARLVAKGYTQKASIDYEETFSPVTMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGYIREEIYMDQSVGAMSSIKMWLSSHFAMKDLGEASYILRIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVRLSKKMCSKTQEEREKMRNCPYALAIGSLMYAMLCTRPDICYA--SD----IDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRK 363
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2P6V0G0_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0G0_9CHLO) HSP 1 Score: 155 bits (393), Expect = 1.590e-36 Identity = 165/687 (24.02%), Postives = 266/687 (38.72%), Query Frame = 1
Query: 1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARR-SVRENKMVPKRKKCVFMGIPCN-------FPTGSISVTRQIVERQTVEWIDGPEKTGGHDTSSDDRDMKS---TGGETILGRETPQLNVQELGQEQQXXXXXXXXXXXXXXXXXXXXXXXV--------GQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRT-----------------------------TMDIFVAELG-------------------------------------------QK----FKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFP-------YREAVGALMWTATMTRPDIASAVRA---------------------------DFEVC-------------------LDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
D+ GP+ +S GG+ Y ++D T V + KSD++ +++ + L +K V +DNGG+F + + HE T P +PQ N AER L EK ++ +P+ LWA A++ + N+ + D K+P+EL++G P HL+ FGA +A S K+ P + +G N +G+I +R + EW D + G + + + + T E + G P +L + + N +E+YK RLV QGF Q EG+ Y E ++P +++R +L+TA A+ +L D K AFL IDEE+Y+SP T+ +A+LG QK F+ +D+G+A +++G + R+R A+ +K+ Q ++ ++ K+ GM A P N K + P Y VG+LM+ + TRPDIA AV A D + +DTRRS +G + GAISW SR++ A+ T+E EY+ +K+ L+LR+
Sbjct: 591 DLCGPLPVASAGGSLYFNTILDDFTGMSFVIPLRHKSDAADSIIHTVTMLQRQAGLPVKRVRSDNGGEFCNSTLSEFYTSQGVLHETTNPYSPQQNGKAERLNRTLWEKARPMLSDA----GLPKH-LWADAIVTANYLRNRSPLSGRD--KTPFELFYGTKPDVSHLRIFGATVFAHTPSALRTKLDPVSQPGCLIGYAANRKGYKILLNSGAIITSRDVTFDD--EWQDDAYRITGRSNVAANAAIANEPTTMKEALSG---PDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQGLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKLNKALYGLKQAPRAWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKY------------GMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWAAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDANHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKKGLWLRK 1253
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A5AHF5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHF5_VITVI) HSP 1 Score: 149 bits (376), Expect = 1.240e-35 Identity = 99/295 (33.56%), Postives = 145/295 (49.15%), Query Frame = 1
Query: 883 VEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYIS-PRTTMDIFVAE---LGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKK-GRKITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVR-----------------------------------------------ADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLR 1611
+E+YK RLVA+GF Q EG+ Y + +SP S+R+++ D EL D K AFL ++DE++Y+ P + + L + F + DMG+A Y +G +I R+R L + Q Y++ ++E+F+++ I L LSK PRN E+E+M+ PY AVG+LM+ T TRPDI+ V +D+ CLD+ +S SG V MLA GAISW S + +TAS T E E+V EA L+LR
Sbjct: 104 IERYKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMTLVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGDLGLLHETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDWVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFVVGMFGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 398
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.440e-34 Identity = 151/535 (28.22%), Postives = 228/535 (42.62%), Query Frame = 1
Query: 1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII-NVPRET-LWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVTRQIVERQT------------------VEW-------IDGPEKTGGHDTSSDDRDM----KSTGGETILGRET-----------PQLNV-----QELGQ-----EQQXXXXXXXXXXXXXXXXXXXXXXXVGQNDKVEKYKYRLVAQGF-WQVEGVHYT-----EKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMR-NFPYREAVGALMWTATMTRPDIA 1425
D+GG MK S+GGN Y +I +D +R+ V F+ KSD++ +ADY + TD GG+F+G+F I E TPP TP+YN VAERALGL+ + +A Q + + P LWA+A+ C N T S +G KS YE++ + P G PF +S R+ K PK +K ++G N P +S+T I ++ + V W IDG +KTG T + +++ K+TG + +L +T P + E G+ + + G+ VE Y L G W E E+Y P R ++ DGE+ + +D+ L + + A L +K +KD+G+ Y GC I + + K+ Q Y+ESM+++FD +T T P + AD P+ +E + P REA+G LMWT +TRPDIA
Sbjct: 27 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRECLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTG---TFTKVKELYEGQKATGSKWVLSWKTNDKGLIVDFKAPSIKTVIAVASEKGKKLAHWDVKQAYIHAKLKDELYLRFPGGCGSMSGKVVNVESALYGLKQSGREWGFEAADALIEDGYEQYRVDPCV--FRKVV------DGEVV------GLIVIYVDDILVAADEGGREELFASLNKKSPVKDLGECTLYDGCAIAMDVENGITKLSQTAYIESMLKRFD------VTTTAFTPAATDAD--LGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIA 534
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO) HSP 1 Score: 150 bits (378), Expect = 1.550e-34 Identity = 160/677 (23.63%), Postives = 259/677 (38.26%), Query Frame = 1
Query: 1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARR-SVRENKMVPKRKKCVFMGIPCN-------FPTGSISVTRQIV------------------------------------ERQTVEWIDGPEKTGGHDTSSDDRDMKS---TGGETILGRETPQLNVQELGQEQQXXXXXXXXXXXXXXXXXXXXXXXV--------GQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRT-----------------------------TMDIFVAELG-------------------------------------------QK----FKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFP-------YREAVGALMWTATMTRPDIASAVRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
D+ GP+ +S GG+ Y ++D T V + KSD++ +++ + L +K V +DNGG+F + + HE T P +PQ N AER L EK ++ +P+ LWA A++ + N+ + D K+P+EL++G P HL+ FGA +A S K+ P + +G N +G+I +R + R EW D + G + + + + T E + G P +L + + N +E+YK RLV QGF Q EG+ Y E ++P +++R +L+TA A+D +L D K AFL IDEE+Y+SP T+ +A+LG QK F+ +D+G+A +++G + R+R A+ +K+ Q ++ ++ K+ GM A P N K + P Y VG+LM P + AD +DTRRS +G + GAISW SR++ A+ T+E EY+ +KE ++LR+
Sbjct: 626 DLCGPLPVASAGGSLYFNTILDDFTGMSFVIPLRHKSDAADSIIHTVTMLQRQAGLPVKRVRSDNGGEFCNSTLSEFYTSQGVLHETTNPYSPQQNGKAERLNRTLWEKARPMLSDA----GLPKH-LWADAIVTANYLRNRSPLSGRD--KTPFELFYGTKPDVSHLRIFGATVFAHTPSALRTKLDPVSQPGRLIGYAANRKGYKILLNSGAIITSRDVTFDESKPPKPTSPTSHKPPSQPETSQPEPRRQVRVAARRPASEWQDDAYRITGRSNVAANAAIANEPTTMKEALSG---PDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKLNKALYGLKQAPRAWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKY------------GMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLM------PPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGMWLRK 1274
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY) HSP 1 Score: 149 bits (375), Expect = 2.700e-34 Identity = 103/308 (33.44%), Postives = 148/308 (48.05%), Query Frame = 1
Query: 865 VGQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRTTMDIFVAE-----------LGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPT-LSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVR----------------------------------------------ADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
+G KVE YK RLVA+G+ Q G+ Y E +SP SIR+LL+ A D E+ D K AFL +I EE+Y+ I A L F +KD+G+A Y +G ++ R+RK R L + Q Y++ ++ +F ++ +K LSK P+ EE+E+MRN PY AVG+LM+ TRPDI AV ++F+ +D R+S+SG V L KGAISW S + TA T+E EY+ EA KE +++R+
Sbjct: 602 LGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFHISWARIKRAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKDLNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRK 909
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.120e-34 Identity = 99/287 (34.49%), Postives = 143/287 (49.83%), Query Frame = 1
Query: 949 EKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELY----------------ISPRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVRA-----------------------------------------DFEVCLDT--------RRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
E Y+PT + +S+R+L A A ++ LRHFD K AF+++D+DE+++ I D F +L +K++GD R+Y GC R+ A LKI Q Y E + +F ++ G++I +G+ LS+ D+ EE+ ++P+RE +G+LMW AT TRPDIA+AVRA EV D RRSVSG ++M G ISWFSR +K T+E EYV+L + +KEVLFLRQ
Sbjct: 10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQ 289
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A4Y2GYT7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GYT7_ARAVE) HSP 1 Score: 147 bits (371), Expect = 4.210e-34 Identity = 147/593 (24.79%), Postives = 252/593 (42.50%), Query Frame = 1
Query: 1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYI----NPQKLSIKFVPTDNGGKFEG-EFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNK-PVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYAR-RSVRENKMVPKRKKCVFMGIPCNFPTGSISV-TRQIVERQTVEWIDGPEKTGGHDTSSDDRDMKSTGGETILGRETPQLNVQELGQEQQXXXXXXXXXXXXXXXXXXXXXXXVGQND----------------------------KVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYIS-------------------------------------------------------------PRTTM----DIFVA-----------ELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEE---MRNFPYREAVGALMWTATMTRPDIASAV 1434
D+ GPM S+ G Y++ FV+D +R+ ++ +++K + VLS + +YI N ++K + +DNGG++ G E + L + I H+LT P +PQ N V+ER L E L+ + N+P+ WA+A + + N+ P+ K+PYELW + P H++ FG YA + + K+ K + +F+G I + +I+ +TV++I+ P + + ++T L E + + E G+ + + +N+ +E+YK RLVAQGF Q G Y E ++P + +IR LA A K+ + H D K AFL ++++E+Y+S P + D+ +A EL ++++LK++G+ YY+G I R ++ ++Q +E +VEKF++K+ + PT D +E E+ N YR+AVGAL++ AT++RPDIA AV
Sbjct: 111 DLCGPMPTQSVSGKCYILTFVDDYSRYSMIYLLSKKDE----VLSKLKEYIAMTRNKFGRTLKVLRSDNGGEYIGKEIEDFLKEQGIVHQLTVPYSPQLNGVSERKNRSLIEMTRCLLSEA----NLPQR-FWAEAAMTATYLQNRLPIKPKG---KTPYELWTNHKPNLSHIRVFGCKAYAYIQKQKRRKLDSKAIEGIFLGYDYRSKGYRIYLGDNKIMISRTVKFIENPPPYAKKEAKELQKQDETTQQLVELELEHEENHSMEEGEINERTEMENPYEKQKWIESTKEEMESLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNIERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLFKFANNGNPMYIIVYVDDLLIAGKDEDIRKIIKELEEEYELKNLGEVNYYLGINIERTKEGN-FALNQKNKIEEIVEKFNLKEAK--------PTNIPVDPNYLKQEGEDDILPNNTQYRKAVGALLYIATVSRPDIAVAV 682 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10903.729.1 >prot_H-elongata_contig10903.729.1 ID=prot_H-elongata_contig10903.729.1|Name=mRNA_H-elongata_contig10903.729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp MKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKback to top mRNA from alignment at H-elongata_contig10903:1762..3755- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10903.729.1 ID=mRNA_H-elongata_contig10903.729.1|Name=mRNA_H-elongata_contig10903.729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1994bp|location=Sequence derived from alignment at H-elongata_contig10903:1762..3755- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10903:1762..3755- >mRNA_H-elongata_contig10903.729.1 ID=mRNA_H-elongata_contig10903.729.1|Name=mRNA_H-elongata_contig10903.729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2064bp|location=Sequence derived from alignment at H-elongata_contig10903:1762..3755- (Himanthalia elongata Himel1 dioecious)back to top |