mRNA_H-elongata_contig108903.723.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: A0A6H5KMN8_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN8_9PHAE) HSP 1 Score: 223 bits (568), Expect = 1.750e-68 Identity = 114/171 (66.67%), Postives = 127/171 (74.27%), Query Frame = 1
Query: 22 HAPMLLLVDMNGTLLYRAKKTLPISGDGDG---------GAPAFAHGDPKPVQYYMRPGAAEFVATMVRHPRVRLAFYTSMRGVNAVPAARFLMPN------EVYDRPFNTPDPLGVNPWDTTRNLPLIWCTPDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPEYTEA 489
H +L+L+DMNGTLL RAKK L +S DG GAPAF HG+ P+ YYMRPGAAE VA + HPR RLAFYTSMRGVNA+PAARFLMP+ EVYDRPFN DP G N WDTTR+LPLIW TP R G GF P TIMVDDTP+KMR+MDAGLVVVPE+TEA
Sbjct: 147 HKQVLILLDMNGTLLRRAKKPLRVSNDGXXXXXXXNSTWGAPAFVHGENVPLHYYMRPGAAELVAALEAHPRARLAFYTSMRGVNALPAARFLMPDDSSAAPEVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNTIMVDDTPRKMRFMDAGLVVVPEFTEA 317
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: A0A7S3K1S4_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1S4_9STRA) HSP 1 Score: 125 bits (313), Expect = 6.330e-31 Identity = 68/164 (41.46%), Postives = 94/164 (57.32%), Query Frame = 1
Query: 7 TTQPSHAPMLLLVDMNGTLLYRAKKTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEFVATMVRHPRVRLAFYTSMRGVNAVPAARFLMPN-EVYDRPFNTPDPLGVNPWDTTRNLPLIWCTPDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPEYTEASV 495
+T+ +L+L+DMNGTLL R K+ L A YY+R A +F + HP + AFYTSMR +A PA R L P+ +Y+R FN PDP N WDT R+L +W TP+R GF+P T+++DDTP+KMR ++VVP +TE +V
Sbjct: 136 STRIQQKKILVLLDMNGTLLVRTKRRLDYRE---------ADCTLNDNYYYIRENAIQFCQQLESHPAIIYAFYTSMRERSAKPATRILAPHAHLYERVFNKPDPFAENSWDTMRDLEKLWSTPNRPAYGFNPTNTLVIDDTPRKMREHPHNVIVVPTFTEKAV 290
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: A0A7S2RHV1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHV1_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.110e-30 Identity = 70/155 (45.16%), Postives = 91/155 (58.71%), Query Frame = 1
Query: 28 PMLLLVDMNGTLLYRAKKTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEFVATMVRHPRVRLAFYTSMRGVNAVPAARFLMPN---EVYDRPFNTPDPL--GVNPWDTTRNLPLIWCTPDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPE 477
P+L+L+DMNGTLL R K L AP FAH + Y++R G + V T++ HPR R+AFYTSMR NA+PA + + ++YDR FN D G WDT R+L +W T D+ G GF T+MVDDTP+KMR+ V VPE
Sbjct: 221 PILILLDMNGTLLIRLKGGLGKQ------APDFAHAG---LNYFIRRGTKQLVRTLLAHPRARVAFYTSMRESNALPAVKRITDGVRVDIYDREFNVADRGHDGAKHWDTMRDLERVWSTVDKVGNGFSWHNTVMVDDTPRKMRHSPQNAVFVPE 366
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: A0A7S2CI38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI38_9STRA) HSP 1 Score: 121 bits (304), Expect = 3.230e-30 Identity = 70/156 (44.87%), Postives = 90/156 (57.69%), Query Frame = 1
Query: 28 PMLLLVDMNGTLLYRAKKTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEFVATMVRHPRVRLAFYTSMRGVNAVPAARFLMPN----EVYDRPFNTPDPL-GVNPWDTTRNLPLIWCTPDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPEY 480
P+L+L+DMNGTLL R K L G P H + YY R G + V+ ++ HPRV LAFYTSMR NA+PA + E+YDR FN D G WDT R++ IW T RAG GF+ R T+MVDD+ +KMR LV++PE+
Sbjct: 163 PILILLDMNGTLLLRLKGKLA------GLRPDLTHAG---LNYYFRAGVCDLVSMLLDHPRVVLAFYTSMRESNALPAVLQISGGRKRVEIYDRDFNKKDEWDGAKDWDTVRDMHKIWTTKGRAGYGFNARNTVMVDDSSRKMRQFPGNLVLIPEF 309
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: F0XVF5_AURAN (FCP1 homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF5_AURAN) HSP 1 Score: 120 bits (301), Expect = 7.560e-30 Identity = 75/176 (42.61%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 7 TTQPSHA--PMLLLVDMNGTLLYRAKKTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEFV-----ATMVRHP---RVRLAFYTSMRGVNAVPAARFLMPN---EVYDRPFNTPDPLGVNPWDTTRNLPLIWCTPDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPEYTEASV 495
TT+P P+L+L DMNGTL++R+K LP+S A +G YY R A + V A P RV AFYTSMR NA P AR+L ++Y+R FN D G N WDT R+LP +W TP +A GFD T+++DDT +KMR + ++VVP Y EA+V
Sbjct: 133 TTKPQLVGNPLLVLCDMNGTLVHRSKTVLPVSAK----AAVVENG----THYYARDHAEDLVQFLCDAATPSDPARRRVVFAFYTSMREANAQPIARYLTRGKRADMYERKFNKDDASGENAWDTMRDLPKVWGTPAKAAHGFDETNTLVIDDTHRKMREYPSNVLVVPTYDEATV 300
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: D7G8V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V3_ECTSI) HSP 1 Score: 119 bits (298), Expect = 5.360e-29 Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = 1
Query: 31 MLLLVDMNGTLLYRAKKTLPISGDGDG---------GAPAFAHGDPKPVQYYMRPGAAEFVATMVRHPRVRLAFYTSMRGVNAVPAARFLMPNE 285
+L+L+DMNGTLLYRAKK L +S DG GAPAF HG+ P+ YYMRPGAAE VA + HPR RLAFYTSMRGVNA+PAARFLMP +
Sbjct: 145 VLILLDMNGTLLYRAKKPLRVSNDGXXXXXXXDSKWGAPAFVHGENVPLHYYMRPGAAELVAALEAHPRTRLAFYTSMRGVNALPAARFLMPGD 238
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: A0A7S1XU20_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU20_9STRA) HSP 1 Score: 110 bits (276), Expect = 5.370e-27 Identity = 69/181 (38.12%), Postives = 92/181 (50.83%), Query Frame = 1
Query: 31 MLLLVDMNGTLLYRAK-KTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEFVATMVRH------------------PRVRLAFYTSMRGVNAVPAARFLM-------PNEVYDRPFNTPDPLGVNPWDTTRNLPLIWCTPDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPEYTEASV 495
+L+L+DMNGTLL+R + K +P + + AP + + YYMRP A E + ++R PRV++ FYTSM+ NA PA L +Y R FN DP G N WDT R+L +W + G GF TIMVDDTP+KMR+M VPE+ E V
Sbjct: 23 ILILLDMNGTLLHRERGKKVPNAAE----APFLNNNN---TYYYMRPFAEELIGLLLRAEKGILSAAGEAPAPHPNAPRVQMGFYTSMQQSNAAPAVATLTGESAAQAKRRIYPRAFNVADPQGKNSWDTHRDLAGVWAAQGKVGFGFSEANTIMVDDTPRKMRHMPRNAFFVPEFNEEGV 196
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: A0A835ZD02_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD02_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.290e-26 Identity = 73/190 (38.42%), Postives = 96/190 (50.53%), Query Frame = 1
Query: 31 MLLLVDMNGTLLYRAKKTLPISGDGDGGAPA-FAH------GDPKPVQYYMRPGAAEFVATMVRHPRVRLAFYTSMRGVNAVPAA----------RFLMPNE--------------------VYDRPFNTPDPLGVNPWDTTRNLPLIWCTPDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPEYTEA 489
+L+L+DMNGT++YRAK L GG PA F H P + YY+RP A E V + H RV LAFYTSMR NA+PA R L + +Y R +N PDPLG +PW T R+L +W + G GF T+++DD+ KMR+M ++ V EYTEA
Sbjct: 17 ILVLLDMNGTIVYRAKAQL-------GGCPAAFTHLVGRDSRTPMRLHYYLRPHAMELVRFLRGHARVTLAFYTSMRLENALPAVEGDDSGNGNGRQLSDTDHASSNSXXXXXXXXXXLEALIYAREYNAPDPLGAHPWSTKRDLARVWTARGKPGHGFGAANTLVIDDSAAKMRHMPHNVLAVEEYTEA 199
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: A0A8J2WY59_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY59_9STRA) HSP 1 Score: 101 bits (252), Expect = 3.760e-22 Identity = 62/168 (36.90%), Postives = 91/168 (54.17%), Query Frame = 1
Query: 28 PMLLLVDMNGTLLYRAKKTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEFVATMVR--------HPRVRLAFYTSMRGVNAVPAARFLMPN---EVYDRPFNTPDPLGVNPWDTTRNLPLIWCT-PDRAGEGFDPRTTIMVDDTPKKMRYMDAGLVVVPEYTEASV 495
P+L+L DMNGTL++R+K L + PA + YY RPGA + + ++ RV AFYTSMR NA P A +L ++Y+R FN DP G N +DT R+LP +W + + GF T+++DDT +KMR + ++VVP + E +V
Sbjct: 274 PVLVLADMNGTLVHRSKTRLTCKAE-----PAC---EANKTFYYARPGAKDLIQFLLHAARTTEEGRRRVVFAFYTSMREANARPIADYLTGGRRVDIYERKFNKADPTGANDYDTMRDLPSVWSSVKPGSARGFTAENTVVIDDTLRKMRELPHNVLVVPPFEEDAV 433
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Match: G0SGX3_CHATD (FCP1 homology domain-containing protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SGX3_CHATD) HSP 1 Score: 60.5 bits (145), Expect = 1.170e-7 Identity = 48/169 (28.40%), Postives = 76/169 (44.97%), Query Frame = 1
Query: 28 PMLLLVDMNGTLLYRAKKTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEFVATMVRHPRVRLAFYTSMRGVNAVPAARFLMPNEVYDRPFNT--PDPLGVNPWDTTRN------LPLIWCTPDRA--------GE-GFDPRTTIMVDDTPKKMRYMDAGLVVVPEYT 483
P+L+++D+NGTLLYR K KP +Y RP A++F+ + + R+ ++S R N + L+ ++ R G++P D + L +W P A GE G+D TI++DDTP+K R ++VPEYT
Sbjct: 302 PLLIVIDLNGTLLYRPDKH-------------------KPTKYQTRPLASQFIRKCIE--KYRVVIWSSTRDENVRIICQKLLSPDLLSRVVAIWGRTKFGLSPSDFKKRTMCYKRLTKLWADPRVAQSYPAGAEGEHGWDQSNTILIDDTPEKARAEPYNAIIVPEYT 449 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108903.723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig108903.723.1 >prot_H-elongata_contig108903.723.1 ID=prot_H-elongata_contig108903.723.1|Name=mRNA_H-elongata_contig108903.723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp MLLLVDMNGTLLYRAKKTLPISGDGDGGAPAFAHGDPKPVQYYMRPGAAEback to top mRNA from alignment at H-elongata_contig108903:177..1013+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig108903.723.1 ID=mRNA_H-elongata_contig108903.723.1|Name=mRNA_H-elongata_contig108903.723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig108903:177..1013+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig108903:177..1013+ >mRNA_H-elongata_contig108903.723.1 ID=mRNA_H-elongata_contig108903.723.1|Name=mRNA_H-elongata_contig108903.723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig108903:177..1013+ (Himanthalia elongata Himel1 dioecious)back to top |