mRNA_H-elongata_contig1089.722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1089.722.1
Unique NamemRNA_H-elongata_contig1089.722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: D7G8X8_ECTSI (GYF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X8_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 3.600e-64
Identity = 197/446 (44.17%), Postives = 226/446 (50.67%), Query Frame = 3 
Query:    3 TNEAGDPIEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAASSRAMKNKDGA----GAGSGASTLVAGG--NSVAGMGTAEMREALIPLLEEGETVVQALRRLGKQKKGAEGRGRLPGEKRKPGASRTKDSGDRANENTASEENGTKER------------------------------------EGRGSSTEKKAVDAEENKRRESFGRLTDLADGLLQAGLHDVYQLTKEEMEEMAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADYQAYQQNQYQSSVAAGETGNESTWFEYRGKDENIHGPYGASHMKGWVQQGYFDGDQAVMMRKVSRGGDKVSGGEGAGMGGGATGGYTKGDNIPTTERSNADLMADLDDXXXXXXXXXXXXXXEK------------ANHDGEGDGAAEWVMSDRIDWSSY 1178
            TNEAGDPIEPFNLRNERD+G+FDTNGNFVWK E  ERDAWLAEMDE AMEEAIGAAS+RA K  +GA    GA  GA   + GG   S++ MGTAEMREALIPLL E ETVVQALRRLG +K+                                                                             +G  +     AV   E KRRE F RLT+LAD LLQAG HDVYQ TKE++EE                                AA+          ++  AGE   ES +FEYRGKD N+HGPYGAS M+GW QQGYFDG+QAVMMR+V     +   GE      G T    +G        SNADLMADL D XXXXXXXXXXXXX              +   G+     EWV+SD IDW+S+
Sbjct:  139 TNEAGDPIEPFNLRNERDMGYFDTNGNFVWKQEDGERDAWLAEMDEEAMEEAIGAASTRAPKPSEGAAGATGAAGGAVAPLGGGAAESLSVMGTAEMREALIPLLLEDETVVQALRRLGAKKQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGSPAGARSTAV---EKKRREDFARLTELADALLQAGQHDVYQQTKEDLEE--------------------------------AAEVAXXXXXXXAATSGAGE---ESAYFEYRGKDGNVHGPYGASQMRGWAQQGYFDGEQAVMMRRV-----QPKNGEATTSTNGGTSKQAEGTPAKDPPSSNADLMADLHDDXXXXXXXXXXXXXXXXXXXXXXXXXXASRGPGKTSSQEEWVLSDNIDWTSF 541
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A6H5JI10_9PHAE (GYF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI10_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.730e-54
Identity = 201/446 (45.07%), Postives = 227/446 (50.90%), Query Frame = 3 
Query:    3 TNEAGDPIEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAASSRAMKNKDGA----GAGSGASTLVAGG--NSVAGMGTAEMREALIPLLEEGETVVQALRRLGKQKKGAEGRGRLPGEKRKPGASRTKDSGDRANENTASEENGTKEREGRGSSTEKKAVDAEENKRR-----------------------------ESFGRLTDLADGLLQAGLHDVYQLTKEEMEEMAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADYQAYQQNQYQSSVAAGETG-------NESTWFEYRGKDENIHGPYGASHMKGWVQQ---GYFDGDQAVMMRKVSRGGDKVSGGEGAGMGGGATGGYTKGDNIPTTERSNADLMADLDDXXXXXXXXXXXXXXEKANHDGEGDGAA---------EWVMSDRIDWSSY 1178
            TNEAGDPIEPFNLRNERD+G++DTNGNFVWK E +ERDAWLAEMDE AMEEAIGAAS+RA K  +GA        GA   + GG   S++ MGTAEMREALIPLL E ETVVQALRRLG +K+                                                                                          E F RLT+LAD LLQAG HDVYQ TKE++EE A  XXXXXXXXXXXXXXXXXXXXXXXXXXXX                              ES +FEYRGKD N+HGPYGAS M+GW QQ   GYFDG+QAVMMR+V     +   GE      G T    +G        SNADL+ADLDD              E A     GD +          EWV+SD IDW+S+
Sbjct:  128 TNEAGDPIEPFNLRNERDMGYYDTNGNFVWKQENDERDAWLAEMDEEAMEEAIGAASTRAPKPSEGATXXXXXXXGAVAPLGGGAAESLSVMGTAEMREALIPLLLEDETVVQALRRLGVKKQSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDFARLTELADALLQAGQHDVYQQTKEDLEEAAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESAYFEYRGKDGNVHGPYGASQMRGWAQQASMGYFDGEQAVMMRRV-----QSKNGEAIASTNGGTSKQAEGTPAQDAPTSNADLLADLDDDEEVEEKDKKEGKGEPAASXXXGDASGGTGKISSQEEWVLSDNIDWTSF 568
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A836CCE7_9STRA (GYF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-14
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 3 
Query:    6 NEAGDPIEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAA 170
            NEAG+ +EPFNL+NER  G+FDTNGNFVWK++  E DAWLA +D+ AMEEAIG A
Sbjct:   27 NEAGEVLEPFNLKNERQEGYFDTNGNFVWKMQDQETDAWLAGLDDAAMEEAIGQA 81
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A7S4EB88_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EB88_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.680e-14
Identity = 56/118 (47.46%), Postives = 70/118 (59.32%), Query Frame = 3 
Query:    6 NEAGDPIEPFNLRNER-DIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAASSRAMKNKDGAGAGSGASTLVAGGNSVAGMGTAEMREALIPLLEEGETVVQALRRLGKQKKG 356
            NE G+ IEPFNLR ER + GFFD NGNFVWK    E DAWLA MDE A E A+G A +R+ K ++            + G+       +E+   LI LLE GETV  A+RR+G+  KG
Sbjct:  101 NEVGERIEPFNLRAERANDGFFDANGNFVWKRGDAEPDAWLASMDEAAEEAAVGEALARSTKMEE------------SDGDEEPSREPSELIVELIQLLEPGETVAAAVRRVGRLLKG 206
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A812X5W5_SYMMI (Cd2bp2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X5W5_SYMMI)

HSP 1 Score: 75.9 bits (185), Expect = 3.840e-11
Identity = 67/209 (32.06%), Postives = 100/209 (47.85%), Query Frame = 3 
Query:    6 NEAGDPIEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAASSRAMKNKDGAGAGSGASTLVAGGNSVAGMGTAEMREALIPLLEEGETVVQALRRLGKQKKGAEGRGRLPGEKRK--PGASRTKDSGDRANENTASEENGTKEREGRGSSTEKKAVDAEENKRRESFGRLTDLADGLLQAGLHDVYQLTKEEME 626
            N+AG+ +EPFNLR+ER+ G FD N N+VW+ +  E D+WLA+MDE  ME++IG A++ A+K K+       A            +    ++  L+  L+ GET++  +RRLGK      GR      KR    GA    DS                                  +KR     RLT++AD LL +G  ++Y +T+E +E
Sbjct:   38 NDAGEVMEPFNLRDEREGGHFDENMNYVWQKDHGEVDSWLADMDEATMEKSIGEAAA-ALKRKN-------AKRETEDTGHEVPVDVKALKLELLTHLQPGETILSTMRRLGKT-----GRSTKGSNKRDVVAGAPSQGDS----------------------------------DKRSVIISRLTEIADLLLGSGEMNIYDMTREAVE 199
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A4D9CQJ9_9STRA (GYF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQJ9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.120e-11
Identity = 67/207 (32.37%), Postives = 93/207 (44.93%), Query Frame = 3 
Query:    6 NEAGDPIEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMD-EGAMEEAIGAASSRAMKNKDGAGAGSGASTLVAGGNSVAGMGTAEMREALIPLLEEGETVVQALRRLGKQKKGAEGRGRLPGEKRKPGASRTKDSGDRANENTASEENGTKEREGRGSSTEKKAVDAEENKRRESFGRLTDLADGLLQAGLHDVYQLTKEEM 623
            NEAGD +EPFNL+NER  GFFD  GNFVWK E    DAWLA ++ E  +E  IG A+    K  D    G      V             ++E L+  +  GETV++AL+RLG                                  +  +E           +  +K VD    + +E+F ++T+LAD LL+AG  +VY +  E M
Sbjct:   58 NEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFV---------DQWALKERLLMFMRPGETVLRALKRLGP---------------------------------SGGKEXXXXXXXXXXXAMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYEAM 222
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A482SSZ3_9ARCH (GYF domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSZ3_9ARCH)

HSP 1 Score: 75.9 bits (185), Expect = 5.160e-11
Identity = 84/331 (25.38%), Postives = 133/331 (40.18%), Query Frame = 3 
Query:   24 IEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAASSRAMKNKDGAGAGSGASTLVAGGNSVAGMGTAEMREALIPLLEEGETVVQALRRL-GKQKKGAEG------------------------------RGRLPGEKRKPGASRTKDSGDRANENTASEENGTKEREGRGSSTEKKAVDAEENKRRESFGRLTDLADGLLQAGLHDVYQLTKEEMEEMAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADYQAYQQNQYQSSVAAGETGNESTWFEYRGKDENIHGPYGASHMKGWVQQGYFDGDQAVMMRKV 923
            +EPFNL+NER+ GFFD N N+V+K E  E DAW+A + E  ME AIG A+    K        +  +   A  +S   +   E++  L+ +++ GETV   +RRL GK  KG  G                              + R P E++   A + K                            ++AV A++N  R    R+T+++D LL +GL  V ++T+E +                                             + S+++          +EY+G D+ ++GPY +  + GW  QGY  G  AV+MR+ 
Sbjct:    1 MEPFNLKNEREGGFFDENMNYVFKKEVGEMDAWVAGLSEAEMEAAIGEAALAEKKRL------ALRARKEAEADSRPHLTPLELKHELLAIMQRGETVSATMRRLSGKLGKGVAGVVFVQLMSEHFQFSIFYIFQFFFVDTKLGIKRRRPDEQKLSAAEQRK----------------------------QQAVTAKQN--RPILERVTEISDLLLSSGLSGVLEMTREAL---------------------------------------------HASTIS----------WEYKGADDIVYGPYSSQEIAGWKGQGYLTGPTAVLMRQA 240
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A7S3YEZ5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEZ5_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 4.380e-10
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:    6 NEAGDPIEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAA 170
            N+AG+ +E FNL+++R  G+FD +GNFVWKL+  E DAWLA MDE  ME AIG A
Sbjct:  123 NDAGEILESFNLKSDRQDGYFDASGNFVWKLQEKEPDAWLAGMDEHEMESAIGQA 177
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A6P8HCS2_ACTTE (CD2 antigen cytoplasmic tail-binding protein 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HCS2_ACTTE)

HSP 1 Score: 71.2 bits (173), Expect = 1.520e-9
Identity = 75/304 (24.67%), Postives = 131/304 (43.09%), Query Frame = 3 
Query:   24 IEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAASSRAMKNKDGAGAGSGASTLVAGGNSVAGMGTAEMREALIPLLEEGETVVQALRRLGKQKKGAEGRGRLPGEKRKPGASRTKDSGDRANENTASEENGTKEREGRGSSTEKKAVDAEENKRRESFGRLTDLADGLLQAGLHDVYQLTKEEMEEMAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADYQAYQQNQYQSSVAAGETGNESTWFEYR---GKDENIHGPYGASHMKGWVQQGYFDGDQAVMMRKVS 926
            I PFNL+ E + G+FD+ GN+  K     RD WL  +D G ++E     +   M++ D                  + + TAE  + ++ +L+ GET++ A+RRLG + K +    +L  +K+   AS  KD+                                EENK++     LT+LAD LLQ G   +YQ T E+++    +                             ++ +  ++ Q  SS +     +   +++Y+    K+ +I GP+ +S M+ W +QGYF     V++RK++
Sbjct:   75 ITPFNLKEEMEDGYFDSEGNYFLKKXKEIRDDWLDSIDWGKVKEKNIKTTDEKMESSDQF-------------EDASEINTAEYLQKIVAILKPGETILSAIRRLGGKXKLSSASAKLKAKKQXQEASEXKDN--------------------------------EENKKQ--LLSLTELADTLLQYGDFGIYQDTYEKLQYKLKKVAEEAKKLDDDDELEAAYRH---------SEGKGEEKPQNSSSGSKDVADDNEVYWQYKWDDSKNADIFGPFSSSAMQDWAEQGYFK--DGVLVRKLA 320
[Close]
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Match: A0A7S3M4V8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4V8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.890e-8
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:   15 GDPIEPFNLRNERDIGFFDTNGNFVWKLETNERDAWLAEMDEGAMEEAIGAASSRAMKNKDGAGAGSGASTLVAGGNSVAGMGTA-EMREALIPLLEEGETVVQALRRL 338
            G+ IE FNL +ER+ G FD N N+V+K E  E DAW+AEMDE AME+AIG A+ +A+K K      +         +++    TA ++++ LI L++  ETV  A+RRL
Sbjct:    1 GEVIEAFNLADEREGGHFDENMNYVFKKEKGEVDAWVAEMDEVAMEQAIGEAA-KAVKRK------AAEREEQDRRDAMREFKTAIQLKKELIALMQPKETVAGAMRRL 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1089.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8X8_ECTSI3.600e-6444.17GYF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JI10_9PHAE1.730e-5445.07GYF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CCE7_9STRA1.080e-1469.09GYF domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4EB88_9STRA1.680e-1447.46Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A812X5W5_SYMMI3.840e-1132.06Cd2bp2 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
A0A4D9CQJ9_9STRA5.120e-1132.37GYF domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A482SSZ3_9ARCH5.160e-1125.38GYF domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S3YEZ5_HETAK4.380e-1060.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6P8HCS2_ACTTE1.520e-924.67CD2 antigen cytoplasmic tail-binding protein 2-lik... [more]
A0A7S3M4V8_9STRA2.890e-843.12Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1089contigH-elongata_contig1089:852..5942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue7.2e-35
Seed eggNOG ortholog2880.D7G8X8
KEGG koko:K13099
KEGG ModuleM00354
EggNOG free text desc.GYF domain
EggNOG OGs2D0TF@1,2SFEN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01009,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGYF
Ec32 orthologEc-15_004640.1
Exons7
Model size2184
Cds size1050
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.3719978-UTR-H-elongata_contig1089:851..9461622929616.3719978-UTR-H-elongata_contig1089:851..946Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1089 852..946 +
1691679092.6276262-UTR-H-elongata_contig1089:851..9461691679092.6276262-UTR-H-elongata_contig1089:851..946Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1089 852..946 +
1622929616.3846629-UTR-H-elongata_contig1089:1906..19421622929616.3846629-UTR-H-elongata_contig1089:1906..1942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1089 1907..1942 +
1691679092.6543734-UTR-H-elongata_contig1089:1906..19421691679092.6543734-UTR-H-elongata_contig1089:1906..1942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1089 1907..1942 +
1622929616.5127656-UTR-H-elongata_contig1089:4939..59421622929616.5127656-UTR-H-elongata_contig1089:4939..5942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1089 4940..5942 +
1691679092.7413948-UTR-H-elongata_contig1089:4939..59421691679092.7413948-UTR-H-elongata_contig1089:4939..5942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1089 4940..5942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.3990319-CDS-H-elongata_contig1089:1942..19891622929616.3990319-CDS-H-elongata_contig1089:1942..1989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 1943..1989 +
1691679092.6702242-CDS-H-elongata_contig1089:1942..19891691679092.6702242-CDS-H-elongata_contig1089:1942..1989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 1943..1989 +
1622929616.4207966-CDS-H-elongata_contig1089:2363..25671622929616.4207966-CDS-H-elongata_contig1089:2363..2567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 2364..2567 +
1691679092.6799288-CDS-H-elongata_contig1089:2363..25671691679092.6799288-CDS-H-elongata_contig1089:2363..2567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 2364..2567 +
1622929616.4420123-CDS-H-elongata_contig1089:3012..33171622929616.4420123-CDS-H-elongata_contig1089:3012..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 3013..3317 +
1691679092.689558-CDS-H-elongata_contig1089:3012..33171691679092.689558-CDS-H-elongata_contig1089:3012..3317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 3013..3317 +
1622929616.4638062-CDS-H-elongata_contig1089:3668..38621622929616.4638062-CDS-H-elongata_contig1089:3668..3862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 3669..3862 +
1691679092.709395-CDS-H-elongata_contig1089:3668..38621691679092.709395-CDS-H-elongata_contig1089:3668..3862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 3669..3862 +
1622929616.4796913-CDS-H-elongata_contig1089:4295..43551622929616.4796913-CDS-H-elongata_contig1089:4295..4355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 4296..4355 +
1691679092.7175188-CDS-H-elongata_contig1089:4295..43551691679092.7175188-CDS-H-elongata_contig1089:4295..4355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 4296..4355 +
1622929616.495252-CDS-H-elongata_contig1089:4699..49391622929616.495252-CDS-H-elongata_contig1089:4699..4939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 4700..4939 +
1691679092.7291682-CDS-H-elongata_contig1089:4699..49391691679092.7291682-CDS-H-elongata_contig1089:4699..4939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1089 4700..4939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1089.722.1prot_H-elongata_contig1089.722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1089 1943..4939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1089.722.1

>prot_H-elongata_contig1089.722.1 ID=prot_H-elongata_contig1089.722.1|Name=mRNA_H-elongata_contig1089.722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp
MDEGAMEEAIGAASSRAMKNKDGAGAGSGASTLVAGGNSVAGMGTAEMRE
ALIPLLEEGETVVQALRRLGKQKKGAEGRGRLPGEKRKPGASRTKDSGDR
ANENTASEENGTKEREGRGSSTEKKAVDAEENKRRESFGRLTDLADGLLQ
AGLHDVYQLTKEEMEEMAAEAAEAAAAVVARASSSASYFGGAGRRGGGAA
DYQAYQQNQYQSSVAAGETGNESTWFEYRGKDENIHGPYGASHMKGWVQQ
GYFDGDQAVMMRKVSRGGDKVSGGEGAGMGGGATGGYTKGDNIPTTERSN
ADLMADLDDEEEEEEEEKVGGGGEKANHDGEGDGAAEWVMSDRIDWSSY*
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mRNA from alignment at H-elongata_contig1089:852..5942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1089.722.1 ID=mRNA_H-elongata_contig1089.722.1|Name=mRNA_H-elongata_contig1089.722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5091bp|location=Sequence derived from alignment at H-elongata_contig1089:852..5942+ (Himanthalia elongata Himel1 dioecious)
AGACGAACGAGGCCGGAGATCCGATCGAGCCCTTTAACCTGCGGAACGAA
CGGGACATCGGCTTCTTCGACACCAACGGGAACTTCGTCTGGAAGGTAAA
CGTACACTGGATGTCTGTATCGAACCATGTGCGTTGGGCTAGTGCATTGT
TAAAAGCACTATTAGTAGCAGTATTGATGGCAGTATTACTACCAGAATTA
GTATTAATGGCAGTATGAATAGCATTACTAATATTAATACTTATAATATT
TGACATACAAACGACGCTGACGGTTGTGGTAACGATTTTGATGTCCACTA
CACTACTATCAAAACTACTGGGAGGAATGCCTGTCCGTCTGTCGGTGGCT
TCGTTGATTTCCCTTGTCTCTAGTAATAAAAATAGTTGTATTTTTTGGGT
GCCTATTGTGTTTTTTTTTAAAAGGTTTTGTTTTTCTTCCTTCACGGCAT
CCCTGCTCAGCGAACCCCAAGCAGTAGGGTTGGAACTAGCCCCGTCGGTA
TAATGGAAGAGCGAAAACAACAGTAATGATGCGCCCCGCCGATTTGAGGG
TCGTGCGAAGGGGGCGCTATCGTGATCTTAGAAGGCGCGTCAGGTATTCG
CGTCCTGCAGCATGAGTTTCCATCCGCGAAGCATTTCCCCTCAAGAGTTA
CGGGAGAATTTATCGATCTGTTGGACAGTGTTCTGCGCCTGGAGGGGTGC
GAGGAGGCGTTGGGCAATTGACGCTGGGACCAATCTCTTCTTCTTGGCCT
TGCCGATCACCGCGGGCGATCAGGTTTTGAGGGTACAACGCACAACGTAC
AGGGAGGGGTTTTCCCCCGTTTAGGAAGTGTCGTTCGCGTGACGCGCCGC
ATCTACACGAAATATACAAACCTCACCATCTCCCGTCCTCTCGAGGTATG
CGTGGTTAATTTAATGGAACAACAACAAAGGCATGCAAAGCTTGAGTACC
CCCCCCCCCATCCTACCTTGCTCGTGGACGCAAATTGCCGTTGTAACTTG
GACCGCGATATTGCGATGGCATGACGACGACCAACGACGACGACGACTGA
AACAGCTGGAAACGAACGAGCGAGACGCGTGGCTCGCGGAGATGGACGAA
GGCGCCATGGAAGAAGCCATCGGTGCCGCCAGCTCCCGGTGAGGCTGAGG
CTAGCTCAAACGTTTGAGGTGTATTAATAACACCCCCGCCGCCGCCCTGC
AGGTACATATACCACACGAGGAGCGTGCTGACAGGCTCAAGGCGGCACAC
GGCTGAAAAGCTTCAAACAACAGGCATTAATGGTCGTCTTGACGACTCGC
TTATGACTGACTTTTAAAATCGTCTCTCCCGGGCCATTCTACGTTTGCAC
GCTTGCCTGGAAGGCTTCGGCGGTACACGGCGAGCCAGACAAGGTTTCCC
GCGCATGGGCGCCCGCTTTATAAACTTCTTTCTCACGTTGCTCCTCCCCT
CTCCCCCTCCGCGCACATGCCTTCGGACCTTGGTGCTTCCCGGGTGGCGC
TTCATGGAGCAGGGCTATGAAGAACAAAGACGGCGCCGGGGCCGGAAGTG
GGGCTTCCACACTCGTCGCCGGAGGGAATTCTGTAGCCGGCATGGGGACG
GCCGAGATGCGCGAAGCGTTGATCCCTCTACTGGAGGAGGGCGAGACCGT
AGTACAGGCGCTGCGGAGGCTGGGGAAGCAAAAGAAGGGTGCCGAGGGAC
GGGGGCGCTTACCCGGGTGAGGGGAGCCTCTTTTAAGAGGCGGGTTGACG
GATTGATCGTCCCGTGCCACTCAACGACGTGCTGCCGAGAGAGCTGGCTG
GCCCGGGTCAGGACCCTTCGACGATGAAACTTCGTTCCAAGGGATTGTTT
TGTTTTGGGATAAGGGTAATTCCTTTTTCTTTTGGTAGTGTTGAGCTGGA
CTTCCGCATTGCCCACATTTCATGTCTTGATTGCGCCGCTCGGCCGAGTG
CTGCCGATAAGGTGTGTACCTTCGAACACGTTTGATTGTTTAGCCCGTAG
TTTTCTGTCACACCCTCTCGAGTGCCTTGGTTGGGGGAAGCTTCGCCCGT
AGTTTTCTGTCACGCCCTCTCGAGCGCCTTGGTTTCGGGGAAGCATGTCA
TGCCGTGCGAAAGCATGACGCCTGCGGCCATCGCCGCCCACCGTGATGGT
CTCCTCGACAGAGAGAAGAGAAAGCCCGGGGCCTCGAGGACAAAAGACAG
CGGCGATCGAGCAAACGAGAATACAGCATCCGAAGAAAACGGAACGAAAG
AGAGGGAAGGGAGGGGGAGTTCCACCGAGAAGAAGGCGGTAGATGCGGAG
GAGAATAAGAGGCGAGAGAGCTTCGGCCGGCTCACGGACCTCGCGGACGG
TCTCTTACAGGCCGGCTTGCACGACGTGTATCAGCTCACGAAGGAGGAGA
TGGAAGAAATGGCGGCGGAGGCCGCGGAGGCCGCAGCGGCCGTCGTGGCG
CGAGCATCATCGTCGGGTAAGCTGTATAAATACTCGAAAGAGTAGAAGGA
CGAGCGCGCGCCAATTCACTTCGTGAGAGTTGCCCAACCCGCGGAGGAGT
TTTTCTTCAACAGAGATAAACTCATTCCAACTCTCCGAACATATAATTAT
GTGCCGCCGTCGCCGCCGTTTTTTTTTTAGTTAACTGACCGTTGTGTTGG
CCGCTTCATCTCAACTTTGCTACAGGTTTGTCACAGTGCCATTTCTCCAG
CCTCTTGTCACGGTGCCGTCTCTCCCTCTTCTCGCCTTGTCCCGATCGCT
CGCATGACCCCCGCCTTGCCGCGATCGCTTGATTTTCTTCATTCATCCGT
CGATCGCCGGGTAGCAGCTTCGTATTTTGGGGGGGCCGGGAGGAGAGGGG
GAGGCGCGGCGGACTACCAGGCCTACCAGCAGAACCAGTACCAATCTTCT
GTGGCCGCCGGGGAAACGGGAAACGAAAGCACGTGGTTCGAGTACCGTGG
GAAGGACGAGAATATCCACGGGCCTTACGGAGCTTCGCATATGAAGGGAT
GGGTGCAACAGGCGAGCATTCAGTGTAAAAAGCTGTCGGAGTTTTCGCAG
GAGGAGGAAGGGGGTGGTGTGTGGAAGCGGAGGCCAAAGCTGGGAGAATG
CTCACTGCGCGCTCACGGTTGAAATTGACGAGTTTTCGCTGGGTGGTTGA
GACGTTTTTATCTCCCGCCCCAAGTACCATGGAGGGAAACGCACGAGCCG
ATTTTAACTGAGACGGACAGGGGCTCATGTTATCCGTCATTTGTTTGTCA
TTCCGATCGCGGAGAGCGTGAGGCTTTTCGATCTTCGGTTTGCATGTTCG
CCACAAACGCTTATGTTGCGCGCATGGACCCGCGATCCCCGGACGGTCTG
TGGTGGGTCGCCTGGAGTGATCGCCGCCACGTTCATTTCGCTTTGTTGTG
GATCCCTGCTGGCTCCTCACTCTTGCATCTCGCTTCGCTTGCAGGGCTAC
TTCGACGGCGACCAAGCGGTCATGATGCGGAAAGTATCGCGCGGAGGTGA
CAAGGTGTGAAGAACGTGGCGTCACCGGTGCTTTTCTCCCCCTGGTGTAC
CGTAGTAGCGAGATACTGTAGTAGTGATATACTGCTGGTGAGGTATTGTA
GTGACGGTAGCCTGGATTGTTGTGTAGTATAGTAGTTCACTACCCGATTA
TGTATTTCACGCGCTCTTGGTAGAACTAGCTGCCCCCCACCGGGCGACGT
TAGACACTGGAGCGACCATAAGACCCCCCATCTCGCTTTGCCACGCTCGA
AGCGCCTTCTACGCCGCGCACCCTGGCATCACATACACTACCGCGAATCT
ACGGCCTGTGTTCATGGAAATCCCGGGACATGACCCCTTTGTGGACAGGT
GTCGGGAGGGGAGGGAGCTGGTATGGGTGGAGGCGCTACGGGCGGGTACA
CCAAGGGCGACAACATCCCGACTACAGAGCGCTCGAATGCCGATCTTATG
GCTGACCTAGATGACGAAGAAGAGGAGGAGGAAGAGGAGAAGGTAGGAGG
AGGAGGAGAAAAGGCCAACCACGACGGGGAAGGCGATGGAGCGGCAGAGT
GGGTCATGTCCGACCGGATAGACTGGTCCTCTTACTGAAGGGTTGCGAGT
GCATGGAGAGCCACGTTATTTTTTGTGGGAATGCCTCCATGTGAGTGTGT
GCTCTGTTTTCCCACTGTGGATGTTTTTGTTGTTTGGTGTGTTAGACCTC
CTTGGGCTCTTTCGGCTATAGCATCAACTCTTGTTGTTCTTCCTGAGGCT
AAGGGTCCTCGGCGAAAGCTAGGTGCATCGATCGGTTGACGTCCAAGCCT
CTGCGTAGCGTTTTTGCTTGTGACCTGGGCTAGCCTCGTGAAAGATGCGT
CGGGGTGTCTGTTGCCCTTTCCGTGCCTCCATTGATTGCACCTCTTTCTA
TATATGGTATTGTGTTGTACTGTACTGTAGAAAGGGGAACATGATAAATG
GAGATTTAAATGCTACAACGTCATGGCGCGCTGCTGAAATGAAACGCCCG
GTCCGCTGCCTAACTTCTCGTCCGACGATTGTGCGGTCACCGCATTTTGT
TTGTTTACATGCAACTAACGATTGGGGGCAAGTGGTATATATATAATATT
TTTTGAGTCCACTTGAAGCTGGCTTTTTTGCAATAGCTTTGACTGTGGTA
CGGTTCCTCCACCGTCAGGTCAACGCTCTATTCTGAGTAGATAATCTTCA
GCCTCTTACTACAATTAAATAGCCGTTTTTGGCCATCGTGCACGCCGCAG
TTTTCTTAGAAAATCAATCAATCTCAATTTCTTTTGTCGATGGGGGACTA
TTCAGCGTAAGTTATTTGTACTATATTGTACTATAAGTTACCGCACTGCT
GACATATTCAGCCTGGGCTGAGAGAATGAGCAGGCTGACGCGGGACCCCG
TCTCGCAAGACCAAATTATCAGGCGCGAACGGGGACAGGGAAAATTTATT
TCCCCTGTTCAGCTGACCACGAGCAGAAGGCAACCAAATCTGGTATATCT
TACTCTGCTATATGTGATGACCATACATACATACATAGGATCAATACGAG
TGACATAGAATGACTAGGACGACAGTGCCGGAATGCGCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig1089:852..5942+

>mRNA_H-elongata_contig1089.722.1 ID=mRNA_H-elongata_contig1089.722.1|Name=mRNA_H-elongata_contig1089.722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at H-elongata_contig1089:852..5942+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAAGGCGCCATGGAAGAAGCCATCGGTGCCGCCAGCTCCCGATG
GACGAAGGCGCCATGGAAGAAGCCATCGGTGCCGCCAGCTCCCGGGCTAT
GAAGAACAAAGACGGCGCCGGGGCCGGAAGTGGGGCTTCCACACTCGTCG
CCGGAGGGAATTCTGTAGCCGGCATGGGGACGGCCGAGATGCGCGAAGCG
TTGATCCCTCTACTGGAGGAGGGCGAGACCGTAGTACAGGCGCTGCGGAG
GCTGGGGAAGCAAAAGAAGGGTGCCGAGGGACGGGGGCGCTTACCCGGGG
CTATGAAGAACAAAGACGGCGCCGGGGCCGGAAGTGGGGCTTCCACACTC
GTCGCCGGAGGGAATTCTGTAGCCGGCATGGGGACGGCCGAGATGCGCGA
AGCGTTGATCCCTCTACTGGAGGAGGGCGAGACCGTAGTACAGGCGCTGC
GGAGGCTGGGGAAGCAAAAGAAGGGTGCCGAGGGACGGGGGCGCTTACCC
GGAGAGAAGAGAAAGCCCGGGGCCTCGAGGACAAAAGACAGCGGCGATCG
AGCAAACGAGAATACAGCATCCGAAGAAAACGGAACGAAAGAGAGGGAAG
GGAGGGGGAGTTCCACCGAGAAGAAGGCGGTAGATGCGGAGGAGAATAAG
AGGCGAGAGAGCTTCGGCCGGCTCACGGACCTCGCGGACGGTCTCTTACA
GGCCGGCTTGCACGACGTGTATCAGCTCACGAAGGAGGAGATGGAAGAAA
TGGCGGCGGAGGCCGCGGAGGCCGCAGCGGCCGTCGTGGCGCGAGCATCA
TCGTCGGAGAGAAGAGAAAGCCCGGGGCCTCGAGGACAAAAGACAGCGGC
GATCGAGCAAACGAGAATACAGCATCCGAAGAAAACGGAACGAAAGAGAG
GGAAGGGAGGGGGAGTTCCACCGAGAAGAAGGCGGTAGATGCGGAGGAGA
ATAAGAGGCGAGAGAGCTTCGGCCGGCTCACGGACCTCGCGGACGGTCTC
TTACAGGCCGGCTTGCACGACGTGTATCAGCTCACGAAGGAGGAGATGGA
AGAAATGGCGGCGGAGGCCGCGGAGGCCGCAGCGGCCGTCGTGGCGCGAG
CATCATCGTCGGCTTCGTATTTTGGGGGGGCCGGGAGGAGAGGGGGAGGC
GCGGCGGACTACCAGGCCTACCAGCAGAACCAGTACCAATCTTCTGTGGC
CGCCGGGGAAACGGGAAACGAAAGCACGTGGTTCGAGTACCGTGGGAAGG
ACGAGAATATCCACGGGCCTTACGGAGCTTCGCATATGAAGGGATGGGTG
CAACAGCTTCGTATTTTGGGGGGGCCGGGAGGAGAGGGGGAGGCGCGGCG
GACTACCAGGCCTACCAGCAGAACCAGTACCAATCTTCTGTGGCCGCCGG
GGAAACGGGAAACGAAAGCACGTGGTTCGAGTACCGTGGGAAGGACGAGA
ATATCCACGGGCCTTACGGAGCTTCGCATATGAAGGGATGGGTGCAACAG
GGCTACTTCGACGGCGACCAAGCGGTCATGATGCGGAAAGTATCGCGCGG
AGGTGACAAGGGCTACTTCGACGGCGACCAAGCGGTCATGATGCGGAAAG
TATCGCGCGGAGGTGACAAGGTGTCGGGAGGGGAGGGAGCTGGTATGGGT
GGAGGCGCTACGGGCGGGTACACCAAGGGCGACAACATCCCGACTACAGA
GCGCTCGAATGCCGATCTTATGGCTGACCTAGATGACGAAGAAGAGGAGG
AGGAAGAGGAGAAGGTAGGAGGAGGAGGAGAAAAGGCCAACCACGACGGG
GAAGGCGATGGAGCGGCAGAGTGGGTCATGTCCGACCGGATAGACTGGTC
CTCTTACTGAGTGTCGGGAGGGGAGGGAGCTGGTATGGGTGGAGGCGCTA
CGGGCGGGTACACCAAGGGCGACAACATCCCGACTACAGAGCGCTCGAAT
GCCGATCTTATGGCTGACCTAGATGACGAAGAAGAGGAGGAGGAAGAGGA
GAAGGTAGGAGGAGGAGGAGAAAAGGCCAACCACGACGGGGAAGGCGATG
GAGCGGCAGAGTGGGTCATGTCCGACCGGATAGACTGGTCCTCTTACTGA
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